© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5091.t1 |
| Gene name | |
| Location | scaffold_11:541714..543272 |
| Strand | + |
| Gene length (bp) | 1558 |
| Transcript length (bp) | 1395 |
| Coding sequence length (bp) | 1395 |
| Protein length (aa) | 465 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02535 | Zip | ZIP Zinc transporter | 1.3E-36 | 152 | 460 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0030001 | metal ion transport | Yes |
| GO:0046873 | metal ion transmembrane transporter activity | Yes |
| GO:0022890 | inorganic cation transmembrane transporter activity | No |
| GO:0006810 | transport | No |
| GO:0008150 | biological_process | No |
| GO:0005575 | cellular_component | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0051234 | establishment of localization | No |
| GO:0008324 | cation transmembrane transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0006812 | cation transport | No |
| GO:0006811 | ion transport | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0051179 | localization | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0005215 | transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0009987 | cellular process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 19 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 153 | 175 | 22 |
| 2 | 185 | 207 | 22 |
| 3 | 228 | 250 | 22 |
| 4 | 309 | 331 | 22 |
| 5 | 338 | 360 | 22 |
| 6 | 370 | 392 | 22 |
| 7 | 399 | 421 | 22 |
| 8 | 441 | 463 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 3.01 | 0.75 | 5.26 |
| 5d_25C | Five days - 25 degrees Celsius | 3.15 | 0.70 | 5.60 |
| 7d_25C | Seven days - 25 degrees Celsius | 2.96 | 0.61 | 5.32 |
| 10d_25C | Ten days - 25 degrees Celsius | 4.45 | 1.23 | 7.68 |
| 7d_15C | Seven days - 15 degrees Celsius | 1.49 | 0.00 | 3.03 |
| 7d_30C | Seven days - 30 degrees Celsius | 17.86 | 8.30 | 27.42 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.945939 | no |
| 3d_25C | 7d_25C | 0.982976 | no |
| 3d_25C | 7d_15C | 0.198083 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.380482 | no |
| 5d_25C | 7d_25C | 0.931703 | no |
| 5d_25C | 7d_15C | 0.180490 | no |
| 5d_25C | 7d_30C | 0.000700 | yes |
| 5d_25C | 10d_25C | 0.473351 | no |
| 7d_25C | 7d_15C | 0.224791 | no |
| 7d_25C | 7d_30C | 0.000700 | yes |
| 7d_25C | 10d_25C | 0.386714 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.046757 | yes |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5091.t1 MRIFRPFLLSLGIARVYAATATTSAQSSSVTGCHTHGSSIYCIDGDGQEVLVSASSTPTTGVPAQYTGCHSHGSQ SYCMDGDGNDVLIQAEGTESETETEDSEDDQEESSSEASQNCHFHAGVEHCTSTGASEETSTGSTCTVQARDYDI PLRIGTLFVVLVTSSIGVFAPILLMKLPFASINGVISTVIKQFGTGIIIATGFIHLYTHANLMFTNECLGELEYE ATTSAVVVAGIFIAFLLEYIGHRIIVARHSKNISAETIPSESQQTQQKGQHEHSSAQQQQSTLASLSHNHGSFDL TGPDSKFSVVVMEAGILFHSILIGLTLVVAGDSFYKTLLVVIVFHQFFEGLALGARIATLPGAIFPNKASMALAF ALITPIGMAIGLGVLHTFNGNSRGTLIALGTLDALSAGILVWVGVVDMWARDWVIEGGEMLNAKLGKVLTGGISF ISGLVLMGVLGKWA* |
| Coding | >Pro_DTO377G3_2|g5091.t1 ATGCGCATTTTTCGGCCCTTCCTTCTATCACTGGGCATTGCCAGAGTATATGCAGCTACAGCAACAACATCAGCA CAATCATCATCTGTAACTGGTTGTCATACTCATGGCTCAAGCATTTACTGCATTGATGGAGATGGCCAAGAAGTT CTGGTTTCGGCCTCATCTACCCCTACAACCGGAGTACCAGCACAATACACTGGGTGTCACTCTCACGGAAGCCAG TCATACTGCATGGATGGAGACGGAAACGATGTCCTGATTCAAGCAGAAGGAACGGAATCCGAGACCGAGACCGAA GACAGTGAAGATGACCAGGAGGAATCCTCAAGCGAAGCTTCACAAAACTGCCACTTCCACGCTGGCGTCGAACAC TGCACGAGTACAGGTGCATCAGAGGAAACTAGTACTGGTTCAACGTGTACTGTCCAAGCAAGAGACTACGATATC CCTCTGAGGATTGGCACATTGTTCGTTGTCCTTGTCACTAGTTCAATTGGTGTCTTTGCCCCTATTCTCCTGATG AAGCTTCCATTTGCCTCTATCAATGGGGTAATCTCGACCGTCATCAAACAATTCGGAACTGGCATCATCATCGCC ACGGGTTTCATCCATCTATACACACATGCGAACCTCATGTTTACCAACGAATGTTTGGGAGAACTCGAGTACGAA GCCACAACCTCCGCGGTAGTCGTGGCAGGTATATTCATTGCTTTCTTGCTGGAATACATTGGCCACCGGATTATT GTTGCTCGCCACAGCAAGAATATCTCCGCAGAAACCATACCGTCCGAGTCTCAGCAAACTCAGCAGAAGGGACAG CATGAACACTCTTCGGCGCAACAGCAACAGTCCACGTTGGCTTCTCTTAGTCACAATCACGGCTCGTTCGACCTT ACCGGACCCGACAGTAAATTTTCGGTCGTTGTCATGGAAGCTGGTATCCTGTTCCACAGTATTTTGATTGGCCTC ACCCTTGTCGTTGCTGGTGACTCATTCTACAAGACACTTCTTGTGGTGATTGTGTTCCATCAATTCTTTGAAGGG TTGGCACTCGGTGCTCGTATTGCAACCCTCCCCGGAGCTATATTCCCTAACAAAGCGTCCATGGCGCTAGCATTT GCCTTGATCACACCTATTGGCATGGCTATTGGGCTTGGTGTTCTTCACACCTTCAATGGTAATTCGCGGGGCACT TTGATTGCACTAGGAACATTGGACGCGCTGTCTGCTGGTATTCTGGTGTGGGTTGGTGTCGTTGATATGTGGGCG CGTGACTGGGTCATTGAGGGAGGTGAAATGTTGAATGCAAAGTTAGGAAAAGTTCTAACCGGTGGTATTTCCTTC ATCAGTGGGCTGGTGCTGATGGGGGTGCTAGGAAAATGGGCTTGA |
| Transcript | >Pro_DTO377G3_2|g5091.t1 ATGCGCATTTTTCGGCCCTTCCTTCTATCACTGGGCATTGCCAGAGTATATGCAGCTACAGCAACAACATCAGCA CAATCATCATCTGTAACTGGTTGTCATACTCATGGCTCAAGCATTTACTGCATTGATGGAGATGGCCAAGAAGTT CTGGTTTCGGCCTCATCTACCCCTACAACCGGAGTACCAGCACAATACACTGGGTGTCACTCTCACGGAAGCCAG TCATACTGCATGGATGGAGACGGAAACGATGTCCTGATTCAAGCAGAAGGAACGGAATCCGAGACCGAGACCGAA GACAGTGAAGATGACCAGGAGGAATCCTCAAGCGAAGCTTCACAAAACTGCCACTTCCACGCTGGCGTCGAACAC TGCACGAGTACAGGTGCATCAGAGGAAACTAGTACTGGTTCAACGTGTACTGTCCAAGCAAGAGACTACGATATC CCTCTGAGGATTGGCACATTGTTCGTTGTCCTTGTCACTAGTTCAATTGGTGTCTTTGCCCCTATTCTCCTGATG AAGCTTCCATTTGCCTCTATCAATGGGGTAATCTCGACCGTCATCAAACAATTCGGAACTGGCATCATCATCGCC ACGGGTTTCATCCATCTATACACACATGCGAACCTCATGTTTACCAACGAATGTTTGGGAGAACTCGAGTACGAA GCCACAACCTCCGCGGTAGTCGTGGCAGGTATATTCATTGCTTTCTTGCTGGAATACATTGGCCACCGGATTATT GTTGCTCGCCACAGCAAGAATATCTCCGCAGAAACCATACCGTCCGAGTCTCAGCAAACTCAGCAGAAGGGACAG CATGAACACTCTTCGGCGCAACAGCAACAGTCCACGTTGGCTTCTCTTAGTCACAATCACGGCTCGTTCGACCTT ACCGGACCCGACAGTAAATTTTCGGTCGTTGTCATGGAAGCTGGTATCCTGTTCCACAGTATTTTGATTGGCCTC ACCCTTGTCGTTGCTGGTGACTCATTCTACAAGACACTTCTTGTGGTGATTGTGTTCCATCAATTCTTTGAAGGG TTGGCACTCGGTGCTCGTATTGCAACCCTCCCCGGAGCTATATTCCCTAACAAAGCGTCCATGGCGCTAGCATTT GCCTTGATCACACCTATTGGCATGGCTATTGGGCTTGGTGTTCTTCACACCTTCAATGGTAATTCGCGGGGCACT TTGATTGCACTAGGAACATTGGACGCGCTGTCTGCTGGTATTCTGGTGTGGGTTGGTGTCGTTGATATGTGGGCG CGTGACTGGGTCATTGAGGGAGGTGAAATGTTGAATGCAAAGTTAGGAAAAGTTCTAACCGGTGGTATTTCCTTC ATCAGTGGGCTGGTGCTGATGGGGGTGCTAGGAAAATGGGCTTGA |
| Gene | >Pro_DTO377G3_2|g5091.t1 ATGCGCATTTTTCGGCCCTTCCTTCTATCACTGGGCATTGCCAGAGTATATGCAGCTACAGCAACAACATCAGCA CAATCATCATCTGTAACTGGTTGTCATACTCATGGCTCAAGCATTTACTGCATTGATGGAGATGGCCAAGAAGTT CTGGTTTCGGCCTCATCTACCCCTACAACCGGAGTACCAGCACAATACACTGGGTGTCACTCTCACGGAAGCCAG TCGTAAGTCCACAGGTACGCATATTTGTGACAATATACTAAACTACAAAATTCAAAGATACTGCATGGATGGAGA CGGAAACGATGTCCTGATTCAAGCAGAAGGAACGGAATCCGAGACCGAGACCGAAGACAGTGAAGATGACCAGGA GGAATCCTCAAGCGAAGCTTCACAAAACTGCCACTTCCACGCTGGCGTCGAGTAAGTTTGTAATAATCCTTCCAA ATTTAGGCGTTATTGACTTTGGCTATTCTAGACACTGCACGAGTACAGGTGCATCAGAGGAAACTAGTACTGGTT CAACGTGTACTGTCCAAGCAAGAGACTACGATATCCCTCTGAGGATTGGCACATTGTTCGTTGTCCTTGTCACTA GTTCAATTGGTGTCTTTGCCCCTATTCTCCTGATGAAGCTTCCATTTGCCTCTATCAATGGGGTAATCTCGACCG TCATCAAACAATTCGGAACTGGCATCATCATCGCCACGGGTTTCATCCATGTAAGCAATTTCAACTTTGACACAC GTATCACTTGCTGACTGCTTTTCCTTAGCTATACACACATGCGAACCTCATGTTTACCAACGAATGTTTGGGAGA ACTCGAGTACGAAGCCACAACCTCCGCGGTAGTCGTGGCAGGTATATTCATTGCTTTCTTGCTGGAATACATTGG CCACCGGATTATTGTTGCTCGCCACAGCAAGAATATCTCCGCAGAAACCATACCGTCCGAGTCTCAGCAAACTCA GCAGAAGGGACAGCATGAACACTCTTCGGCGCAACAGCAACAGTCCACGTTGGCTTCTCTTAGTCACAATCACGG CTCGTTCGACCTTACCGGACCCGACAGTAAATTTTCGGTCGTTGTCATGGAAGCTGGTATCCTGTTCCACAGTAT TTTGATTGGCCTCACCCTTGTCGTTGCTGGTGACTCATTCTACAAGACACTTCTTGTGGTGATTGTGTTCCATCA ATTCTTTGAAGGGTTGGCACTCGGTGCTCGTATTGCAACCCTCCCCGGAGCTATATTCCCTAACAAAGCGTCCAT GGCGCTAGCATTTGCCTTGATCACACCTATTGGCATGGCTATTGGGCTTGGTGTTCTTCACACCTTCAATGGTAA TTCGCGGGGCACTTTGATTGCACTAGGAACATTGGACGCGCTGTCTGCTGGTATTCTGGTGTGGGTTGGTGTCGT TGATATGTGGGCGCGTGACTGGGTCATTGAGGGAGGTGAAATGTTGAATGCAAAGTTAGGAAAAGTTCTAACCGG TGGTATTTCCTTCATCAGTGGGCTGGTGCTGATGGGGGTGCTAGGAAAATGGGCTTGA |