© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5081.t1 |
| Gene name | |
| Location | scaffold_11:523337..524089 |
| Strand | - |
| Gene length (bp) | 752 |
| Transcript length (bp) | 666 |
| Coding sequence length (bp) | 666 |
| Protein length (aa) | 222 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08229 | SHR3_chaperone | ER membrane protein SH3 | 7.4E-79 | 6 | 199 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
| 2 | 61 | 83 | 22 |
| 3 | 90 | 112 | 22 |
| 4 | 146 | 164 | 18 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 130.06 | 76.76 | 183.35 |
| 5d_25C | Five days - 25 degrees Celsius | 122.96 | 71.98 | 173.94 |
| 7d_25C | Seven days - 25 degrees Celsius | 126.43 | 74.65 | 178.20 |
| 10d_25C | Ten days - 25 degrees Celsius | 145.94 | 87.13 | 204.75 |
| 7d_15C | Seven days - 15 degrees Celsius | 115.55 | 66.62 | 164.48 |
| 7d_30C | Seven days - 30 degrees Celsius | 128.92 | 76.29 | 181.54 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.872751 | no |
| 3d_25C | 7d_25C | 0.935911 | no |
| 3d_25C | 7d_15C | 0.699883 | no |
| 3d_25C | 7d_30C | 0.981280 | no |
| 3d_25C | 10d_25C | 0.696530 | no |
| 5d_25C | 7d_25C | 0.938445 | no |
| 5d_25C | 7d_15C | 0.855330 | no |
| 5d_25C | 7d_30C | 0.890180 | no |
| 5d_25C | 10d_25C | 0.528194 | no |
| 7d_25C | 7d_15C | 0.772701 | no |
| 7d_25C | 7d_30C | 0.956077 | no |
| 7d_25C | 10d_25C | 0.601747 | no |
| 7d_15C | 7d_30C | 0.721508 | no |
| 7d_15C | 10d_25C | 0.362045 | no |
| 7d_30C | 10d_25C | 0.666684 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5081.t1 MAFKSGSFATFMIVCPTCFFLGIIFSLFPYDYPILWSTVLTPTAHYDYLEAHLRFLHASPPLIPRILHIVIFVGL AGLLTKLYKPSESNMLFDGASLVLYMCGVTVYIANIVKGLRLASAGRYGAELATSTDENEQILGREDSLKVLSAS NTILALVLVGILVLQAGQWYAERKDAQEDESFATSKKTEKESGEATATTSGASTAIAGKSGRQGSQRKKSN* |
| Coding | >Pro_DTO377G3_2|g5081.t1 ATGGCCTTCAAAAGCGGCTCGTTCGCGACTTTCATGATTGTCTGCCCGACCTGTTTCTTCTTGGGCATTATCTTC TCCCTCTTCCCTTACGACTACCCGATCTTGTGGTCCACAGTGTTGACACCTACCGCACACTATGACTACCTCGAA GCGCATCTCCGCTTCCTGCACGCCTCGCCCCCGCTCATCCCACGCATCCTGCACATCGTAATTTTCGTCGGCCTA GCCGGCCTCCTCACGAAGCTCTACAAGCCCTCCGAATCAAACATGCTCTTCGACGGCGCCTCGCTGGTTCTCTAC ATGTGCGGCGTGACAGTCTACATCGCCAACATCGTCAAGGGTCTGCGCCTCGCCTCTGCCGGCCGGTACGGCGCC GAGCTGGCTACCTCCACCGACGAGAATGAGCAGATCCTTGGTCGCGAGGACTCGCTCAAGGTTCTTTCCGCTAGC AATACTATTCTGGCCCTCGTCCTCGTTGGCATCCTGGTCCTGCAGGCTGGGCAGTGGTACGCGGAGCGCAAGGAT GCGCAGGAAGATGAATCGTTTGCTACTAGCAAGAAGACTGAGAAGGAGTCTGGCGAGGCGACGGCTACTACTTCC GGTGCGTCGACTGCGATTGCTGGGAAGTCTGGTCGGCAGGGAAGCCAGCGTAAGAAGAGCAATTAA |
| Transcript | >Pro_DTO377G3_2|g5081.t1 ATGGCCTTCAAAAGCGGCTCGTTCGCGACTTTCATGATTGTCTGCCCGACCTGTTTCTTCTTGGGCATTATCTTC TCCCTCTTCCCTTACGACTACCCGATCTTGTGGTCCACAGTGTTGACACCTACCGCACACTATGACTACCTCGAA GCGCATCTCCGCTTCCTGCACGCCTCGCCCCCGCTCATCCCACGCATCCTGCACATCGTAATTTTCGTCGGCCTA GCCGGCCTCCTCACGAAGCTCTACAAGCCCTCCGAATCAAACATGCTCTTCGACGGCGCCTCGCTGGTTCTCTAC ATGTGCGGCGTGACAGTCTACATCGCCAACATCGTCAAGGGTCTGCGCCTCGCCTCTGCCGGCCGGTACGGCGCC GAGCTGGCTACCTCCACCGACGAGAATGAGCAGATCCTTGGTCGCGAGGACTCGCTCAAGGTTCTTTCCGCTAGC AATACTATTCTGGCCCTCGTCCTCGTTGGCATCCTGGTCCTGCAGGCTGGGCAGTGGTACGCGGAGCGCAAGGAT GCGCAGGAAGATGAATCGTTTGCTACTAGCAAGAAGACTGAGAAGGAGTCTGGCGAGGCGACGGCTACTACTTCC GGTGCGTCGACTGCGATTGCTGGGAAGTCTGGTCGGCAGGGAAGCCAGCGTAAGAAGAGCAATTAA |
| Gene | >Pro_DTO377G3_2|g5081.t1 ATGGCCTTCAAAAGCGGCTCGTTCGCGACTTTCATGATTGTCTGCCGTAAGTCCATCGCATCGCGAGTCCCCGGA CTCCAACGGCAAAGAGGCCACGAGACTGTAATAAACTAACTCAGTCTGCCCAACCAGCGACCTGTTTCTTCTTGG GCATTATCTTCTCCCTCTTCCCTTACGACTACCCGATCTTGTGGTCCACAGTGTTGACACCTACCGCACACTATG ACTACCTCGAAGCGCATCTCCGCTTCCTGCACGCCTCGCCCCCGCTCATCCCACGCATCCTGCACATCGTAATTT TCGTCGGCCTAGCCGGCCTCCTCACGAAGCTCTACAAGCCCTCCGAATCAAACATGCTCTTCGACGGCGCCTCGC TGGTTCTCTACATGTGCGGCGTGACAGTCTACATCGCCAACATCGTCAAGGGTCTGCGCCTCGCCTCTGCCGGCC GGTACGGCGCCGAGCTGGCTACCTCCACCGACGAGAATGAGCAGATCCTTGGTCGCGAGGACTCGCTCAAGGTTC TTTCCGCTAGCAATACTATTCTGGCCCTCGTCCTCGTTGGCATCCTGGTCCTGCAGGCTGGGCAGTGGTACGCGG AGCGCAAGGATGCGCAGGAAGATGAATCGTTTGCTACTAGCAAGAAGACTGAGAAGGAGTCTGGCGAGGCGACGG CTACTACTTCCGGTGCGTCGACTGCGATTGCTGGGAAGTCTGGTCGGCAGGGAAGCCAGCGTAAGAAGAGCAATT AA |