© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5065.t1 |
| Gene name | |
| Location | scaffold_11:469017..471575 |
| Strand | + |
| Gene length (bp) | 2558 |
| Transcript length (bp) | 1044 |
| Coding sequence length (bp) | 1044 |
| Protein length (aa) | 348 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13489 | Methyltransf_23 | Methyltransferase domain | 4.3E-13 | 87 | 245 |
| PF13649 | Methyltransf_25 | Methyltransferase domain | 3.9E-07 | 95 | 184 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 36 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 13 | 35 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 18.82 | 8.55 | 29.08 |
| 5d_25C | Five days - 25 degrees Celsius | 14.94 | 6.28 | 23.60 |
| 7d_25C | Seven days - 25 degrees Celsius | 16.59 | 7.26 | 25.93 |
| 10d_25C | Ten days - 25 degrees Celsius | 18.91 | 8.49 | 29.32 |
| 7d_15C | Seven days - 15 degrees Celsius | 19.80 | 8.91 | 30.70 |
| 7d_30C | Seven days - 30 degrees Celsius | 28.26 | 14.15 | 42.37 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.535602 | no |
| 3d_25C | 7d_25C | 0.757026 | no |
| 3d_25C | 7d_15C | 0.909764 | no |
| 3d_25C | 7d_30C | 0.168614 | no |
| 3d_25C | 10d_25C | 0.992011 | no |
| 5d_25C | 7d_25C | 0.812944 | no |
| 5d_25C | 7d_15C | 0.426538 | no |
| 5d_25C | 7d_30C | 0.027948 | yes |
| 5d_25C | 10d_25C | 0.535728 | no |
| 7d_25C | 7d_15C | 0.645143 | no |
| 7d_25C | 7d_30C | 0.068260 | no |
| 7d_25C | 10d_25C | 0.755778 | no |
| 7d_15C | 7d_30C | 0.244248 | no |
| 7d_15C | 10d_25C | 0.921148 | no |
| 7d_30C | 10d_25C | 0.189996 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5065.t1 MKEKKWTKSRWTPISTLWPLAMTWIIMTFSPSAIARGRLENGRRYQAIKEDDYWGPSDEQQFEAFEIGHLMFLVL DHDQPNPLFRSPIGASPKNILDIGTGQGSWAIDVADRYPLATVRGVDLFPPPVLWMPPNCIFEVDDVLREWTWRE PFDFIHMRLMYGAFPPDGWQKLYKQAYDALEPGGWIEQIELDVRVYSDDGTLTKEHQLYGWGDIFIGCSERAGRS LRTHETMRSAIEEAGFVDVHEEKYKIPLGCWARDNILKEAGHLQHSHWNAALEGWAMWLLTHFGEPEPWSKEEVQ VFLVKVRKELNNPRIHAYEPANRVWARKPLKEELKVEEVKIKAEKSA* |
| Coding | >Pro_DTO377G3_2|g5065.t1 ATGAAGGAAAAAAAATGGACCAAATCGCGGTGGACCCCGATTTCTACTCTATGGCCACTGGCTATGACGTGGATC ATCATGACCTTCAGTCCGTCCGCTATTGCAAGGGGACGGCTGGAAAACGGCCGAAGATACCAAGCCATCAAAGAA GATGACTACTGGGGTCCTTCCGACGAGCAGCAATTTGAGGCATTTGAGATTGGCCACCTGATGTTTCTCGTGCTA GATCACGATCAGCCAAATCCTCTGTTCCGCTCCCCTATCGGCGCTTCGCCTAAGAATATCTTGGACATCGGAACT GGCCAAGGGAGTTGGGCAATTGATGTTGCCGATCGCTATCCTCTAGCTACCGTCCGCGGCGTGGATCTCTTTCCC CCACCCGTGTTATGGATGCCCCCGAACTGCATCTTCGAGGTGGATGATGTGCTTCGCGAGTGGACATGGAGAGAG CCGTTTGACTTTATCCACATGCGCCTCATGTATGGCGCCTTCCCTCCCGATGGATGGCAAAAGCTATACAAACAG GCCTACGATGCCCTAGAGCCTGGTGGCTGGATCGAACAAATCGAATTAGACGTGCGAGTCTACAGCGATGACGGC ACCTTGACGAAAGAACACCAGCTATATGGTTGGGGCGACATTTTTATCGGATGCTCCGAACGAGCAGGACGGTCA CTCAGAACCCACGAAACAATGCGTAGCGCCATCGAGGAAGCCGGGTTCGTGGACGTGCATGAGGAAAAGTACAAG ATTCCTCTAGGATGTTGGGCCAGGGATAATATACTGAAGGAGGCCGGACACCTCCAGCATAGCCATTGGAACGCC GCTCTAGAGGGTTGGGCGATGTGGCTTCTCACTCACTTTGGAGAGCCAGAGCCGTGGTCAAAGGAGGAGGTGCAG GTGTTTCTGGTTAAAGTGCGCAAGGAGCTGAACAACCCGCGTATTCACGCTTATGAGCCTGCGAATCGCGTGTGG GCAAGAAAGCCTCTCAAGGAGGAATTGAAGGTGGAGGAAGTAAAGATCAAGGCTGAGAAATCGGCGTAA |
| Transcript | >Pro_DTO377G3_2|g5065.t1 ATGAAGGAAAAAAAATGGACCAAATCGCGGTGGACCCCGATTTCTACTCTATGGCCACTGGCTATGACGTGGATC ATCATGACCTTCAGTCCGTCCGCTATTGCAAGGGGACGGCTGGAAAACGGCCGAAGATACCAAGCCATCAAAGAA GATGACTACTGGGGTCCTTCCGACGAGCAGCAATTTGAGGCATTTGAGATTGGCCACCTGATGTTTCTCGTGCTA GATCACGATCAGCCAAATCCTCTGTTCCGCTCCCCTATCGGCGCTTCGCCTAAGAATATCTTGGACATCGGAACT GGCCAAGGGAGTTGGGCAATTGATGTTGCCGATCGCTATCCTCTAGCTACCGTCCGCGGCGTGGATCTCTTTCCC CCACCCGTGTTATGGATGCCCCCGAACTGCATCTTCGAGGTGGATGATGTGCTTCGCGAGTGGACATGGAGAGAG CCGTTTGACTTTATCCACATGCGCCTCATGTATGGCGCCTTCCCTCCCGATGGATGGCAAAAGCTATACAAACAG GCCTACGATGCCCTAGAGCCTGGTGGCTGGATCGAACAAATCGAATTAGACGTGCGAGTCTACAGCGATGACGGC ACCTTGACGAAAGAACACCAGCTATATGGTTGGGGCGACATTTTTATCGGATGCTCCGAACGAGCAGGACGGTCA CTCAGAACCCACGAAACAATGCGTAGCGCCATCGAGGAAGCCGGGTTCGTGGACGTGCATGAGGAAAAGTACAAG ATTCCTCTAGGATGTTGGGCCAGGGATAATATACTGAAGGAGGCCGGACACCTCCAGCATAGCCATTGGAACGCC GCTCTAGAGGGTTGGGCGATGTGGCTTCTCACTCACTTTGGAGAGCCAGAGCCGTGGTCAAAGGAGGAGGTGCAG GTGTTTCTGGTTAAAGTGCGCAAGGAGCTGAACAACCCGCGTATTCACGCTTATGAGCCTGCGAATCGCGTGTGG GCAAGAAAGCCTCTCAAGGAGGAATTGAAGGTGGAGGAAGTAAAGATCAAGGCTGAGAAATCGGCGTAA |
| Gene | >Pro_DTO377G3_2|g5065.t1 ATGAAGGAAAAGTGAGCTGAAGAATAAGCCTTGTTTGTTGCTACTCTGTTTGCTCCATCCACACAAGAACAAATA TCATTTTATTTACGTAAATCATGATGAAAGCCCTGGAGTATAGTCTGAGGTAGGAGGTAAAGGTATTTAGTGAGG GAAATATCAACTGCTTTGGAGCATACAGCTTATACGCAGATGTCAAGAAAGAAACCAGTATGGTGAGATAATGGG ACAAGGAGGCTAGGGCCAAACATAGACAAAGAGTATTAAAAGCTGTGATAGACTTAAATGTTCCTATCCGTGAAT ATCCCAAGAGTTATATGAAGCTACATGAAAGGCATACCTACATACTAGCTATCTGTTTCGCTCACATTGCTATAT CTTGTAGTCACGTCTCATGCCGAGGCAATACTTGATTTATATACTGAAATATCATCTATCAACATAAAACGGCTC AAGGGACCATTGAATTTCTCTTATTGCATGGGTTATCCTTCGAAGATCTCTACTTGAGGTTGCTCCCAAGAGGGG TATGCTCGTATCTTACCTGATTTGTGATAAGGTAGATGCAAGCTTTGAGGCCACCTATTATGGAATGAGCTTGAA TTTGGCTCATGAGCCTTGTTTTGTGGAATACCAAGTGGGAGGATGTTGGTTTAGGGCTTGTTGTTCTGCCTGTAC AACATACTCAGAAGTGAACATGGCTCCCGGGGTGCCGCTTTATGAGGTCCCACACGGACCAGCTGACATGGATCA ACAGCATCCTGCCGTTCCCCTCGTACTTTTTTTATGCGAGTCCTCAACCTAGACCCAACTCGGTCATACTCTAGG GCTGTGGCTTCGGCTCACACCCTGCTAGCTTAACGGTTGTGGATTCCCCGGGAGTTTGTTCCCGTGCTGACACTT TTACACTCCACCCTCGTTTTCCTCCTTTTATCTTCCACAGTATTTGGAAAAGTGTCGAGAGAATGGTTAAGAAAA TGGACCAAATCGCGGTGGTGAGTGGTAATCTCATAATCCGATATAGTCATTCTCACCTCTCACCTAGGACCCCGA TTTCTACTCTATGGCCACTGGCTATGACGTGGATCATCATGACCTTCAGTCGTGAGTGTCACTGCAAATCATATA TATAAGTCGAGTTCTTACCCCATCCATAGCGTCCGCTATTGCAAGGGGACGGCTGGAAAACGGCCGAAGGTCAGT ATACTTCCAGTCTAAGATGCTTTGTAAGACTAACCCGGTATGCAGATACCAAGCCATCAAAGAAGATGACTACTG GTTAGTTACGATGCAGCGATCTTGTTCTACATAAAGTAACAATATCAAGGGGTCCTTCCGACGAGCAGCAATTTG AGGCATTTGAGATTGGGTAAACCACATCCCGTCCCCATACCTTTCAGAGATGTGATACTAACAAATTCAGCCACC TGATGTTTCTCGTGCTAGATCACGATCAGCCAAATCCTCTGTTCCGCTCCCCTATCGGCGCTTCGCCTAAGGTGA ATTTATACGGAGACCCTCGCTTAAACGCCCTGCTAACTACGGAGTATAGAATATCTTGGACATCGGAACTGGCCA AGGGAGTTGGGCAATGTATGTCAACGGGTAGCCCTTCTTGAGAGAAAGAGAATCTCTAACAAGTCCTTAGTGATG TTGCCGATCGCTATCCTCTAGGTATTGAATTTCTTGATTCTACTCCTTCTATTTCTGACCGAACTACCCCTGACT GAAACTAACTAGCTACCGTCCGCGGCGTGGATCTCTTTCCCCCACCCGTGTTATGGATGCCCCCGAACTGCATCT TCGAGGTGGATGATGTGCTTCGCGAGTGGACATGGAGAGAGCCGTTTGACTTTATCCACATGCGCCTCATGTATG GCGCCTTCCCTCCCGATGGATGGCAAAAGCTATACAAACAGGCCTACGAGTGAGTTCCAATTCCCTACTAATCGA CTTTCCGAGACATGGCGCCCTAATTTCTTTCATCTCTCACTAGTGCCCTAGAGCCTGGTGGCTGGATCGAACAAA TCGAATTAGACGTGCGAGTCTACAGCGATGACGGCACCTTGACGAAAGAACACCAGCTATATGGTTGGGGCGACA TTTTTATCGGATGCTCCGAACGAGCAGGACGGTCACTCAGAACCCACGAAACAATGCGTAGCGCCATCGAGGAAG CCGGGTTCGTGGACGTGCATGAGGAAAAGTACAAGATTCCTCTAGGATGTTGGGCCAGGGATAATATACTGAAGG AGGCCGGACACCTCCAGCATAGCCATTGGAACGCCGCTCTAGAGGGTTGGGCGATGTGGCTTCTCACTCACTTTG GAGAGCCAGAGCCGTGGTCAAAGGAGGAGGTGCAGGTGTTTCTGGTTAAAGTGCGCAAGGAGCTGAACAACCCGC GTATTCACGCTTATGAGCCTGCGTAAGTTTGCTTTCGGATCGGATCGCTGGATTTACTCATGCTGATATATTTCA GGAATCGCGTGTGGGCAAGAAAGCCTCTCAAGGAGGAATTGAAGGTGGAGGAAGTAAAGATCAAGGCTGAGAAAT CGGCGTAA |