© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5053.t1 |
| Gene name | |
| Location | scaffold_11:429463..431860 |
| Strand | + |
| Gene length (bp) | 2397 |
| Transcript length (bp) | 1785 |
| Coding sequence length (bp) | 1785 |
| Protein length (aa) | 595 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02133 | Transp_cyt_pur | Permease for cytosine/purines, uracil, thiamine, allantoin | 6.2E-19 | 149 | 514 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 42 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 155 | 177 | 22 |
| 2 | 192 | 214 | 22 |
| 3 | 235 | 257 | 22 |
| 4 | 267 | 289 | 22 |
| 5 | 296 | 313 | 17 |
| 6 | 333 | 355 | 22 |
| 7 | 367 | 389 | 22 |
| 8 | 423 | 445 | 22 |
| 9 | 456 | 478 | 22 |
| 10 | 488 | 510 | 22 |
| 11 | 531 | 553 | 22 |
| 12 | 568 | 587 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 51.21 | 30.99 | 71.42 |
| 5d_25C | Five days - 25 degrees Celsius | 122.73 | 74.08 | 171.38 |
| 7d_25C | Seven days - 25 degrees Celsius | 156.05 | 93.01 | 219.10 |
| 10d_25C | Ten days - 25 degrees Celsius | 250.10 | 143.72 | 356.48 |
| 7d_15C | Seven days - 15 degrees Celsius | 72.48 | 43.01 | 101.94 |
| 7d_30C | Seven days - 30 degrees Celsius | 130.16 | 77.31 | 183.00 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.000700 | yes |
| 3d_25C | 7d_25C | 0.000700 | yes |
| 3d_25C | 7d_15C | 0.121403 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.330330 | no |
| 5d_25C | 7d_15C | 0.013810 | yes |
| 5d_25C | 7d_30C | 0.857732 | no |
| 5d_25C | 10d_25C | 0.001804 | yes |
| 7d_25C | 7d_15C | 0.000700 | yes |
| 7d_25C | 7d_30C | 0.491988 | no |
| 7d_25C | 10d_25C | 0.033697 | yes |
| 7d_15C | 7d_30C | 0.003197 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.002297 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5053.t1 MACGGGKSQSGLSHFFPRGNQIFLHFAPPGNRVLVISIDYLLLPAAHFVLDLNILCFQSASSLGSMASGNEITTL AVHSNKEDLTKFAPESPGVVNNDEALYPETTTNRRNPVGSRLGSIIRAFENQLVEYNLEARGIERVAVDERMKRN TWMSYLQIFLLWISINLAPNNITLGMLGPAVYGLNFLDSALCAVFGSLVGSIVSSWMATWGPVSGIRTLAFGRYS MGWWPSKIIVLLNLIQMIGYGLIDCVVGGQILSAVSPGGMSVAVGIVIIAVISWAVATFGIQVFHYYERFAFLPQ VIVVCILFGVSSVKFDLSTTSIGDSRTVAGNRLSFFSICLSAAITYAPLAADFFVYYPENTSRLKIFSLCLAGLL VSFTMALVCGVGLASGIPTFPEYSAAYEKGQGALIVEGFGPLHGFGKFCSVICALGLIANTVAPTYSAGIDFQIL GRYAEAVPRVIWNTIAVIIYTVCALVGRSNLSEIFTNFLALMGYWVVIWIAIVLEERFIFRLRTGYNWGIWRDPS KLPIGIAAFTAFIVGWVGAVLCMAQLWYIGPIAKLVGEYGADMGIYVGFCWTALVYPPLRFIELRFVGR* |
| Coding | >Pro_DTO377G3_2|g5053.t1 ATGGCTTGTGGTGGCGGAAAAAGCCAAAGCGGGCTATCTCATTTCTTTCCCCGCGGCAATCAAATCTTTCTCCAT TTTGCCCCCCCTGGAAATCGGGTGCTTGTCATATCAATTGATTACCTGCTATTACCTGCTGCTCACTTTGTTTTG GATTTGAATATCCTCTGCTTTCAAAGTGCCTCTTCTCTCGGAAGCATGGCTTCAGGAAATGAAATCACCACCTTA GCGGTGCACTCCAACAAGGAAGACCTGACGAAATTCGCGCCTGAAAGTCCCGGCGTGGTCAACAACGATGAGGCA CTTTACCCCGAGACGACGACCAATCGCCGCAATCCCGTTGGATCACGATTGGGCTCCATTATTAGAGCTTTTGAG AACCAGCTCGTCGAGTATAATTTAGAAGCGCGTGGTATCGAACGAGTTGCCGTGGATGAGCGCATGAAGCGCAAC ACGTGGATGTCGTATCTGCAAATCTTCTTGCTTTGGATCTCCATTAACCTTGCACCCAATAACATCACCCTCGGG ATGTTAGGGCCTGCAGTCTATGGTCTCAACTTCCTAGACTCGGCACTTTGTGCTGTCTTTGGCTCTCTAGTTGGT TCCATCGTCTCGTCTTGGATGGCCACATGGGGGCCCGTTTCCGGGATCCGAACATTGGCATTCGGAAGGTATTCG ATGGGCTGGTGGCCTAGCAAGATCATTGTTCTATTGAACCTTATTCAGATGATTGGATACGGCTTGATTGATTGC GTCGTTGGCGGACAAATATTGTCTGCTGTCTCCCCTGGTGGCATGTCCGTGGCTGTCGGCATCGTGATCATTGCG GTTATCAGCTGGGCTGTTGCCACATTCGGCATCCAAGTTTTTCACTACTATGAACGATTCGCATTTTTGCCCCAA GTAATTGTGGTTTGCATCCTTTTCGGGGTGTCATCCGTGAAGTTTGACTTGTCAACCACCTCTATTGGCGATTCC CGGACAGTAGCTGGCAATAGGCTATCCTTCTTCTCCATCTGTCTGAGTGCCGCAATCACCTATGCCCCACTAGCA GCCGACTTCTTCGTCTACTACCCCGAAAACACCTCTCGGCTGAAGATATTCAGTCTATGCCTGGCAGGCCTTCTT GTCTCCTTCACGATGGCCCTAGTCTGCGGCGTCGGGTTAGCCTCAGGCATACCCACGTTCCCAGAGTATTCCGCC GCCTATGAGAAAGGCCAAGGAGCACTAATCGTCGAAGGATTCGGCCCGCTGCACGGCTTCGGCAAATTCTGCTCG GTTATCTGCGCCCTAGGCCTGATCGCTAATACCGTCGCGCCCACTTACTCCGCCGGCATCGACTTCCAGATCCTC GGTCGCTACGCCGAGGCCGTACCGCGCGTCATCTGGAATACCATTGCCGTCATTATCTATACTGTCTGCGCGCTC GTTGGCCGCAGCAACCTCTCTGAGATCTTCACCAATTTCCTCGCTTTGATGGGCTACTGGGTTGTCATTTGGATT GCTATTGTCCTCGAGGAACGGTTCATCTTCCGCCTCCGTACTGGGTACAACTGGGGCATCTGGCGGGATCCGTCA AAGCTACCCATTGGCATTGCGGCTTTCACTGCCTTTATCGTTGGCTGGGTGGGCGCCGTATTGTGTATGGCGCAG CTGTGGTACATTGGACCCATTGCCAAATTGGTCGGCGAATACGGTGCTGATATGGGAATTTACGTCGGGTTCTGT TGGACTGCGCTTGTTTACCCTCCTCTCAGATTCATCGAACTTCGTTTCGTGGGTCGCTGA |
| Transcript | >Pro_DTO377G3_2|g5053.t1 ATGGCTTGTGGTGGCGGAAAAAGCCAAAGCGGGCTATCTCATTTCTTTCCCCGCGGCAATCAAATCTTTCTCCAT TTTGCCCCCCCTGGAAATCGGGTGCTTGTCATATCAATTGATTACCTGCTATTACCTGCTGCTCACTTTGTTTTG GATTTGAATATCCTCTGCTTTCAAAGTGCCTCTTCTCTCGGAAGCATGGCTTCAGGAAATGAAATCACCACCTTA GCGGTGCACTCCAACAAGGAAGACCTGACGAAATTCGCGCCTGAAAGTCCCGGCGTGGTCAACAACGATGAGGCA CTTTACCCCGAGACGACGACCAATCGCCGCAATCCCGTTGGATCACGATTGGGCTCCATTATTAGAGCTTTTGAG AACCAGCTCGTCGAGTATAATTTAGAAGCGCGTGGTATCGAACGAGTTGCCGTGGATGAGCGCATGAAGCGCAAC ACGTGGATGTCGTATCTGCAAATCTTCTTGCTTTGGATCTCCATTAACCTTGCACCCAATAACATCACCCTCGGG ATGTTAGGGCCTGCAGTCTATGGTCTCAACTTCCTAGACTCGGCACTTTGTGCTGTCTTTGGCTCTCTAGTTGGT TCCATCGTCTCGTCTTGGATGGCCACATGGGGGCCCGTTTCCGGGATCCGAACATTGGCATTCGGAAGGTATTCG ATGGGCTGGTGGCCTAGCAAGATCATTGTTCTATTGAACCTTATTCAGATGATTGGATACGGCTTGATTGATTGC GTCGTTGGCGGACAAATATTGTCTGCTGTCTCCCCTGGTGGCATGTCCGTGGCTGTCGGCATCGTGATCATTGCG GTTATCAGCTGGGCTGTTGCCACATTCGGCATCCAAGTTTTTCACTACTATGAACGATTCGCATTTTTGCCCCAA GTAATTGTGGTTTGCATCCTTTTCGGGGTGTCATCCGTGAAGTTTGACTTGTCAACCACCTCTATTGGCGATTCC CGGACAGTAGCTGGCAATAGGCTATCCTTCTTCTCCATCTGTCTGAGTGCCGCAATCACCTATGCCCCACTAGCA GCCGACTTCTTCGTCTACTACCCCGAAAACACCTCTCGGCTGAAGATATTCAGTCTATGCCTGGCAGGCCTTCTT GTCTCCTTCACGATGGCCCTAGTCTGCGGCGTCGGGTTAGCCTCAGGCATACCCACGTTCCCAGAGTATTCCGCC GCCTATGAGAAAGGCCAAGGAGCACTAATCGTCGAAGGATTCGGCCCGCTGCACGGCTTCGGCAAATTCTGCTCG GTTATCTGCGCCCTAGGCCTGATCGCTAATACCGTCGCGCCCACTTACTCCGCCGGCATCGACTTCCAGATCCTC GGTCGCTACGCCGAGGCCGTACCGCGCGTCATCTGGAATACCATTGCCGTCATTATCTATACTGTCTGCGCGCTC GTTGGCCGCAGCAACCTCTCTGAGATCTTCACCAATTTCCTCGCTTTGATGGGCTACTGGGTTGTCATTTGGATT GCTATTGTCCTCGAGGAACGGTTCATCTTCCGCCTCCGTACTGGGTACAACTGGGGCATCTGGCGGGATCCGTCA AAGCTACCCATTGGCATTGCGGCTTTCACTGCCTTTATCGTTGGCTGGGTGGGCGCCGTATTGTGTATGGCGCAG CTGTGGTACATTGGACCCATTGCCAAATTGGTCGGCGAATACGGTGCTGATATGGGAATTTACGTCGGGTTCTGT TGGACTGCGCTTGTTTACCCTCCTCTCAGATTCATCGAACTTCGTTTCGTGGGTCGCTGA |
| Gene | >Pro_DTO377G3_2|g5053.t1 ATGGCTTGTGTGTTGTAACTAGTACAATAACTATGGATGTAGTATGTCAGGTAAGGTGGTGGCGGAAAAAGCCAA AGCGGGCTATCTCATTTCTTTCCCCGCGGCAATCAAATCTTTCTCCATTTTGCCCCCCCTGGAAATCGGGTGCTT GTCATATCAATTGATTACCTGCTATTACCTGCTGCTCACTTTGTTTTGGATTTGAATATCCTCTGCTTTCAAAGG TGAAATATGCCTGTGTGATTGCCTGATCAAGTCCGCTGACGTTGGTCATAGTGCCTCTTCTCTCGGAAGGTAACA CAACCTGTGCCACAAAGGACGGCTATCATGAAGACGAGTAGTGTGGCAATCTCTCACGATCAAGGTATCTAGGAC AAGCATCCTGCATGAAGACCGGTGTTCGACTATCGTCGTTCTGAGAATATACGGTTAAACTTGATCTGGGTAATT CCAGCGAAAGGACTCAATGCGCTTTTCCTCTCTTCAGGAAATAGGTGTGATACTAACAGAATCGCAGCATGGCTT CAGGAAATGAAATCACCACCTTAGCGGTGCACTCCAACAAGGAAGACCTGACGAAATTCGCGCCTGAAAGTCCCG GCGTGGTCAACAACGATGAGGCACTTTACCCCGAGACGACGACCAATCGCCGCAATCCCGTTGGATCACGATTGG GCTCCATTATTAGAGCTTTTGAGAACCAGCTCGTCGAGTATAATTTAGAAGCGCGTGGTATCGAACGAGTTGCCG TGGATGAGCGCATGAAGCGCAACACGTGGATGTCGTATCTGCAAATCTTCTTGCTTTGGATCTCCATTAACCTTG CACCCAATAACATCACCCTCGGGATGTTAGGGCCTGCAGTCTATGGTCTCAACTTCCTAGACTCGGCACTTTGTG CTGTCTTTGGCTCTCTAGTTGGTTCCATCGTCTCGTCTTGGATGGCCACATGGGGGCCCGTTTCCGGGATCCGAA CATTGGTGCGTAGCACATATTGAATCCGTTGGACTATTATTTGATCGAGAGGGCTAATCGGTGACTAGGCATTCG GAAGGTATTCGATGGGCTGGTGGCCTAGCAAGATCATTGTTCTATTGAACCTTATTCAGATGATTGGATACGGCT TGATTGATTGCGTCGTTGGCGGACAAATATTGTCTGCTGTCTCCCCTGGTGGCATGTCCGTGGCTGTCGGTGGGT ATTCCGAAAACTTCATACATCAATAGTGATACTAATCTTGATATTATAGGCATCGTGATCATTGCGGTTATCAGC TGGGCTGTTGCCACATTCGGCATCCAAGTTTTTCACTACTATGAACGGTTAGTCTTGAGAGATTATTGCCATGAG GAACAATGTCACTGACGGGCCTCATTAGATTCGCATTTTTGCCCCAAGTAATTGTGGTTTGCATCCTTTTCGGGG TGTCATCCGTGAAGTTTGACTTGTCAACCACCTCTATTGGCGATTCCCGGACAGTAGCTGGCAATAGGTGAGTCT GCTTCTTACAACTAAGAATCGAAGCCCGGTTTTCTAACATGGTCCTAGGCTATCCTTCTTCTCCATCTGTCTGAG TGCCGCAATCACCTATGCCCCACTAGCAGCCGACTTCTTCGTCTACTACCCCGAAAACACCTCTCGGCTGAAGAT ATTCAGTCTATGCCTGGCAGGCCTTCTTGTCTCCTTCACGATGGCCCTAGTCTGCGGCGTCGGGTTAGCCTCAGG CATACCCACGTTCCCAGAGTATTCCGCCGCCTATGAGAAAGGCCAAGGAGCACTAATCGTCGAAGGATTCGGCCC GCTGCACGGCTTCGGCAAATTCTGCTCGGTTATCTGCGCCCTAGGCCTGATCGCTAATACCGTCGCGCCCACTTA CTCCGCCGGCATCGACTTCCAGATCCTCGGTCGCTACGCCGAGGCCGTACCGCGCGTCATCTGGAATACCATTGC CGTCATTATCTATACTGTCTGCGCGCTCGTTGGCCGCAGCAACCTCTCTGAGATCTTCACCAATTTCCTCGCTTT GATGGGCTACTGGGTTGTCATTTGGATTGCTATTGTCCTCGAGGAACGGTTCATCTTCCGCCTCCGTACTGGGTA CAACTGGGGCATCTGGCGGGATCCGTCAAAGCTACCCATTGGCATTGCGGCTTTCACTGCCTTTATCGTTGGCTG GGTGGGCGCCGTATTGTGTATGGCGCAGCTGTGGTACATTGGACCCATTGCCAAATTGGTCGGCGAATACGGTGC TGATGTGAGTTAAATCCCATCTCCCATCATGTGTGTATTTGTTCCTAACTAATTACTCTCTAGATGGGAATTTAC GTCGGGTTCTGTTGGACTGCGCTTGTTTACCCTCCTCTCAGATTCATCGAACTTCGTTTCGTGGGTCGCTGA |