© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g505.t1 |
| Gene name | |
| Location | scaffold_01:1288526..1289480 |
| Strand | - |
| Gene length (bp) | 954 |
| Transcript length (bp) | 954 |
| Coding sequence length (bp) | 954 |
| Protein length (aa) | 318 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05721 | PhyH | Phytanoyl-CoA dioxygenase (PhyH) | 1.4E-09 | 10 | 227 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 21.13 | 9.52 | 32.74 |
| 5d_25C | Five days - 25 degrees Celsius | 19.32 | 8.56 | 30.09 |
| 7d_25C | Seven days - 25 degrees Celsius | 15.45 | 6.34 | 24.56 |
| 10d_25C | Ten days - 25 degrees Celsius | 15.84 | 6.65 | 25.03 |
| 7d_15C | Seven days - 15 degrees Celsius | 23.56 | 11.03 | 36.10 |
| 7d_30C | Seven days - 30 degrees Celsius | 32.60 | 16.55 | 48.64 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.841631 | no |
| 3d_25C | 7d_25C | 0.378191 | no |
| 3d_25C | 7d_15C | 0.801102 | no |
| 3d_25C | 7d_30C | 0.145601 | no |
| 3d_25C | 10d_25C | 0.427656 | no |
| 5d_25C | 7d_25C | 0.557603 | no |
| 5d_25C | 7d_15C | 0.596845 | no |
| 5d_25C | 7d_30C | 0.065652 | no |
| 5d_25C | 10d_25C | 0.611443 | no |
| 7d_25C | 7d_15C | 0.193110 | no |
| 7d_25C | 7d_30C | 0.007437 | yes |
| 7d_25C | 10d_25C | 0.961967 | no |
| 7d_15C | 7d_30C | 0.292042 | no |
| 7d_15C | 10d_25C | 0.224539 | no |
| 7d_30C | 10d_25C | 0.010083 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g505.t1 MSTPNLDALKRDGFVVVRNLLTPAEVAHYHEIATKATTMTRSGGWPHFRTVPKQFPPWPTTVPPASEGGIWGVQH LMHPEMPGRDSFARCYFSPTILAVAEELMGVENAASSETEPLVMELFNLLVAPETKDFELRWHRDDISEHATAEE ELAQLAAKAPGGRQSHCQYNLALCPDASLIVVPGTHARARTQVERDADPYAAELPDQLVVQLQPGDAVFYNSNIL HRGIYRGKSEGGVETRLTLHGSLGLKASDSEYGGDDAEEKKKVRATAVLQHGVGAWVRRDDAAFGLGERPEKMRA NLVEMGTGEGVGFSLQG* |
| Coding | >Pro_DTO377G3_2|g505.t1 ATGTCCACCCCAAATCTAGACGCCCTCAAACGCGATGGCTTCGTGGTAGTCCGCAATCTCCTGACTCCAGCCGAG GTAGCGCACTACCACGAAATTGCCACAAAAGCCACAACCATGACTCGCAGTGGAGGCTGGCCGCACTTCCGCACC GTCCCAAAACAATTCCCACCCTGGCCGACAACCGTACCGCCCGCCTCGGAGGGCGGAATCTGGGGCGTGCAGCAC CTAATGCACCCCGAAATGCCAGGACGGGACAGCTTCGCACGATGCTATTTCTCTCCCACGATTCTCGCCGTCGCG GAGGAGCTCATGGGGGTTGAAAACGCCGCCAGCAGCGAGACCGAGCCCCTCGTCATGGAACTGTTCAATCTGCTC GTGGCGCCCGAAACTAAAGACTTCGAGCTCCGCTGGCACCGCGACGATATCTCCGAACACGCCACCGCCGAGGAA GAACTTGCCCAGCTTGCGGCTAAGGCGCCTGGCGGCCGTCAGTCGCATTGCCAGTACAACTTGGCGCTGTGCCCC GATGCATCGCTGATTGTTGTGCCGGGGACGCATGCACGCGCACGCACGCAGGTCGAGCGTGATGCGGATCCTTAT GCGGCTGAGTTGCCGGATCAATTGGTTGTTCAATTGCAGCCTGGAGATGCAGTGTTTTATAATAGTAATATCTTG CATCGTGGAATTTATCGGGGAAAGAGTGAGGGTGGGGTTGAGACCAGGCTGACTTTGCATGGAAGTCTTGGATTG AAGGCTTCTGACAGTGAGTATGGGGGTGATGATGCCGAGGAGAAGAAGAAGGTTAGGGCTACTGCGGTACTGCAG CATGGGGTTGGGGCTTGGGTTCGTCGTGATGATGCTGCTTTTGGACTTGGGGAGAGGCCTGAGAAGATGAGGGCT AATCTTGTTGAGATGGGGACTGGGGAGGGGGTTGGATTTTCTTTGCAGGGGTAG |
| Transcript | >Pro_DTO377G3_2|g505.t1 ATGTCCACCCCAAATCTAGACGCCCTCAAACGCGATGGCTTCGTGGTAGTCCGCAATCTCCTGACTCCAGCCGAG GTAGCGCACTACCACGAAATTGCCACAAAAGCCACAACCATGACTCGCAGTGGAGGCTGGCCGCACTTCCGCACC GTCCCAAAACAATTCCCACCCTGGCCGACAACCGTACCGCCCGCCTCGGAGGGCGGAATCTGGGGCGTGCAGCAC CTAATGCACCCCGAAATGCCAGGACGGGACAGCTTCGCACGATGCTATTTCTCTCCCACGATTCTCGCCGTCGCG GAGGAGCTCATGGGGGTTGAAAACGCCGCCAGCAGCGAGACCGAGCCCCTCGTCATGGAACTGTTCAATCTGCTC GTGGCGCCCGAAACTAAAGACTTCGAGCTCCGCTGGCACCGCGACGATATCTCCGAACACGCCACCGCCGAGGAA GAACTTGCCCAGCTTGCGGCTAAGGCGCCTGGCGGCCGTCAGTCGCATTGCCAGTACAACTTGGCGCTGTGCCCC GATGCATCGCTGATTGTTGTGCCGGGGACGCATGCACGCGCACGCACGCAGGTCGAGCGTGATGCGGATCCTTAT GCGGCTGAGTTGCCGGATCAATTGGTTGTTCAATTGCAGCCTGGAGATGCAGTGTTTTATAATAGTAATATCTTG CATCGTGGAATTTATCGGGGAAAGAGTGAGGGTGGGGTTGAGACCAGGCTGACTTTGCATGGAAGTCTTGGATTG AAGGCTTCTGACAGTGAGTATGGGGGTGATGATGCCGAGGAGAAGAAGAAGGTTAGGGCTACTGCGGTACTGCAG CATGGGGTTGGGGCTTGGGTTCGTCGTGATGATGCTGCTTTTGGACTTGGGGAGAGGCCTGAGAAGATGAGGGCT AATCTTGTTGAGATGGGGACTGGGGAGGGGGTTGGATTTTCTTTGCAGGGGTAG |
| Gene | >Pro_DTO377G3_2|g505.t1 ATGTCCACCCCAAATCTAGACGCCCTCAAACGCGATGGCTTCGTGGTAGTCCGCAATCTCCTGACTCCAGCCGAG GTAGCGCACTACCACGAAATTGCCACAAAAGCCACAACCATGACTCGCAGTGGAGGCTGGCCGCACTTCCGCACC GTCCCAAAACAATTCCCACCCTGGCCGACAACCGTACCGCCCGCCTCGGAGGGCGGAATCTGGGGCGTGCAGCAC CTAATGCACCCCGAAATGCCAGGACGGGACAGCTTCGCACGATGCTATTTCTCTCCCACGATTCTCGCCGTCGCG GAGGAGCTCATGGGGGTTGAAAACGCCGCCAGCAGCGAGACCGAGCCCCTCGTCATGGAACTGTTCAATCTGCTC GTGGCGCCCGAAACTAAAGACTTCGAGCTCCGCTGGCACCGCGACGATATCTCCGAACACGCCACCGCCGAGGAA GAACTTGCCCAGCTTGCGGCTAAGGCGCCTGGCGGCCGTCAGTCGCATTGCCAGTACAACTTGGCGCTGTGCCCC GATGCATCGCTGATTGTTGTGCCGGGGACGCATGCACGCGCACGCACGCAGGTCGAGCGTGATGCGGATCCTTAT GCGGCTGAGTTGCCGGATCAATTGGTTGTTCAATTGCAGCCTGGAGATGCAGTGTTTTATAATAGTAATATCTTG CATCGTGGAATTTATCGGGGAAAGAGTGAGGGTGGGGTTGAGACCAGGCTGACTTTGCATGGAAGTCTTGGATTG AAGGCTTCTGACAGTGAGTATGGGGGTGATGATGCCGAGGAGAAGAAGAAGGTTAGGGCTACTGCGGTACTGCAG CATGGGGTTGGGGCTTGGGTTCGTCGTGATGATGCTGCTTTTGGACTTGGGGAGAGGCCTGAGAAGATGAGGGCT AATCTTGTTGAGATGGGGACTGGGGAGGGGGTTGGATTTTCTTTGCAGGGGTAG |