Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g5046.t1
Gene name
Locationscaffold_11:411716..412312
Strand-
Gene length (bp)596
Transcript length (bp)474
Coding sequence length (bp)474
Protein length (aa) 158

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.6E-15 43 112

GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 54 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 62.45 29.23 95.67
5d_25C Five days - 25 degrees Celsius 60.22 27.51 92.93
7d_25C Seven days - 25 degrees Celsius 60.19 27.30 93.07
10d_25C Ten days - 25 degrees Celsius 54.54 24.04 85.03
7d_15C Seven days - 15 degrees Celsius 70.76 33.70 107.81
7d_30C Seven days - 30 degrees Celsius 57.12 25.62 88.62

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.936463 no
3d_25C 7d_25C 0.937665 no
3d_25C 7d_15C 0.753155 no
3d_25C 7d_30C 0.839383 no
3d_25C 10d_25C 0.740372 no
5d_25C 7d_25C 0.998383 no
5d_25C 7d_15C 0.665082 no
5d_25C 7d_30C 0.907353 no
5d_25C 10d_25C 0.814110 no
7d_25C 7d_15C 0.663383 no
7d_25C 7d_30C 0.909745 no
7d_25C 10d_25C 0.815831 no
7d_15C 7d_30C 0.553200 no
7d_15C 10d_25C 0.449866 no
7d_30C 10d_25C 0.923878 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g5046.t1
MSNEMEIDTPVANDDAPEQSDRSFEPRTQGNAVAVRSIEGWIIIVSNIHEESSEEDVTELFAEYGEIKNFSLNLD
RRTGYVKGYALIEYSTLPEASEAIQNLNGYKLLEQTLRVDYAFVRPPPSGKNKNGGPKGRAIRNRSRSPNRSRSP
EAGGDRE*
Coding >Pro_DTO377G3_2|g5046.t1
ATGTCGAACGAGATGGAAATTGACACTCCTGTCGCAAACGACGACGCTCCCGAGCAATCGGACCGCAGTTTTGAA
CCACGCACCCAGGGGAACGCGGTCGCCGTGCGCAGTATCGAAGGATGGATTATCATTGTGTCTAATATCCACGAA
GAATCGTCGGAGGAGGATGTTACCGAACTCTTTGCAGAGTATGGTGAAATCAAGAACTTCAGCTTGAACCTTGAT
CGGCGAACGGGTTATGTCAAGGGCTACGCATTGATCGAATACTCCACGCTCCCCGAAGCCAGTGAAGCTATCCAG
AACCTTAACGGTTACAAGCTCCTCGAACAGACGCTTCGTGTCGACTATGCTTTTGTCCGCCCGCCCCCATCAGGC
AAGAACAAGAATGGAGGGCCAAAGGGCCGTGCTATTCGGAATCGCAGCAGAAGCCCCAACCGGAGTCGCAGCCCC
GAAGCTGGCGGCGACCGGGAATAA
Transcript >Pro_DTO377G3_2|g5046.t1
ATGTCGAACGAGATGGAAATTGACACTCCTGTCGCAAACGACGACGCTCCCGAGCAATCGGACCGCAGTTTTGAA
CCACGCACCCAGGGGAACGCGGTCGCCGTGCGCAGTATCGAAGGATGGATTATCATTGTGTCTAATATCCACGAA
GAATCGTCGGAGGAGGATGTTACCGAACTCTTTGCAGAGTATGGTGAAATCAAGAACTTCAGCTTGAACCTTGAT
CGGCGAACGGGTTATGTCAAGGGCTACGCATTGATCGAATACTCCACGCTCCCCGAAGCCAGTGAAGCTATCCAG
AACCTTAACGGTTACAAGCTCCTCGAACAGACGCTTCGTGTCGACTATGCTTTTGTCCGCCCGCCCCCATCAGGC
AAGAACAAGAATGGAGGGCCAAAGGGCCGTGCTATTCGGAATCGCAGCAGAAGCCCCAACCGGAGTCGCAGCCCC
GAAGCTGGCGGCGACCGGGAATAA
Gene >Pro_DTO377G3_2|g5046.t1
ATGTCGAACGAGATGGAAATTGACACTCCTGTCGCAAACGACGACGCTCCCGAGCAATCGGACCGCAGTTTTGAA
CCACGCACCCAGGGGAACGCGGTCGCCGTGCGCAGTATCGAAGGATGGATTATCATTGTGTCTAATATCCACGAA
GAATCGTCGGAGGAGGATGTTACCGAACTCTTTGCAGAGTATGGTGAAATCAAGAACTTCAGCTTGAACCTTGAT
CGGCGAACGGGTTATGTCAAGGTGCGCATTCTGAATTTCACAACTACCTCTGAAACGACCCCCAACAACGTTCCT
TCTGAAACAAGGGGACCCTTCTTGACTCGCGTCCAATGAAAGGATCACTAACACCACTATTTTGGTAGGGCTACG
CATTGATCGAATACTCCACGCTCCCCGAAGCCAGTGAAGCTATCCAGAACCTTAACGGTTACAAGCTCCTCGAAC
AGACGCTTCGTGTCGACTATGCTTTTGTCCGCCCGCCCCCATCAGGCAAGAACAAGAATGGAGGGCCAAAGGGCC
GTGCTATTCGGAATCGCAGCAGAAGCCCCAACCGGAGTCGCAGCCCCGAAGCTGGCGGCGACCGGGAATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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