© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5046.t1 |
| Gene name | |
| Location | scaffold_11:411716..412312 |
| Strand | - |
| Gene length (bp) | 596 |
| Transcript length (bp) | 474 |
| Coding sequence length (bp) | 474 |
| Protein length (aa) | 158 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.6E-15 | 43 | 112 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 54 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 62.45 | 29.23 | 95.67 |
| 5d_25C | Five days - 25 degrees Celsius | 60.22 | 27.51 | 92.93 |
| 7d_25C | Seven days - 25 degrees Celsius | 60.19 | 27.30 | 93.07 |
| 10d_25C | Ten days - 25 degrees Celsius | 54.54 | 24.04 | 85.03 |
| 7d_15C | Seven days - 15 degrees Celsius | 70.76 | 33.70 | 107.81 |
| 7d_30C | Seven days - 30 degrees Celsius | 57.12 | 25.62 | 88.62 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.936463 | no |
| 3d_25C | 7d_25C | 0.937665 | no |
| 3d_25C | 7d_15C | 0.753155 | no |
| 3d_25C | 7d_30C | 0.839383 | no |
| 3d_25C | 10d_25C | 0.740372 | no |
| 5d_25C | 7d_25C | 0.998383 | no |
| 5d_25C | 7d_15C | 0.665082 | no |
| 5d_25C | 7d_30C | 0.907353 | no |
| 5d_25C | 10d_25C | 0.814110 | no |
| 7d_25C | 7d_15C | 0.663383 | no |
| 7d_25C | 7d_30C | 0.909745 | no |
| 7d_25C | 10d_25C | 0.815831 | no |
| 7d_15C | 7d_30C | 0.553200 | no |
| 7d_15C | 10d_25C | 0.449866 | no |
| 7d_30C | 10d_25C | 0.923878 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5046.t1 MSNEMEIDTPVANDDAPEQSDRSFEPRTQGNAVAVRSIEGWIIIVSNIHEESSEEDVTELFAEYGEIKNFSLNLD RRTGYVKGYALIEYSTLPEASEAIQNLNGYKLLEQTLRVDYAFVRPPPSGKNKNGGPKGRAIRNRSRSPNRSRSP EAGGDRE* |
| Coding | >Pro_DTO377G3_2|g5046.t1 ATGTCGAACGAGATGGAAATTGACACTCCTGTCGCAAACGACGACGCTCCCGAGCAATCGGACCGCAGTTTTGAA CCACGCACCCAGGGGAACGCGGTCGCCGTGCGCAGTATCGAAGGATGGATTATCATTGTGTCTAATATCCACGAA GAATCGTCGGAGGAGGATGTTACCGAACTCTTTGCAGAGTATGGTGAAATCAAGAACTTCAGCTTGAACCTTGAT CGGCGAACGGGTTATGTCAAGGGCTACGCATTGATCGAATACTCCACGCTCCCCGAAGCCAGTGAAGCTATCCAG AACCTTAACGGTTACAAGCTCCTCGAACAGACGCTTCGTGTCGACTATGCTTTTGTCCGCCCGCCCCCATCAGGC AAGAACAAGAATGGAGGGCCAAAGGGCCGTGCTATTCGGAATCGCAGCAGAAGCCCCAACCGGAGTCGCAGCCCC GAAGCTGGCGGCGACCGGGAATAA |
| Transcript | >Pro_DTO377G3_2|g5046.t1 ATGTCGAACGAGATGGAAATTGACACTCCTGTCGCAAACGACGACGCTCCCGAGCAATCGGACCGCAGTTTTGAA CCACGCACCCAGGGGAACGCGGTCGCCGTGCGCAGTATCGAAGGATGGATTATCATTGTGTCTAATATCCACGAA GAATCGTCGGAGGAGGATGTTACCGAACTCTTTGCAGAGTATGGTGAAATCAAGAACTTCAGCTTGAACCTTGAT CGGCGAACGGGTTATGTCAAGGGCTACGCATTGATCGAATACTCCACGCTCCCCGAAGCCAGTGAAGCTATCCAG AACCTTAACGGTTACAAGCTCCTCGAACAGACGCTTCGTGTCGACTATGCTTTTGTCCGCCCGCCCCCATCAGGC AAGAACAAGAATGGAGGGCCAAAGGGCCGTGCTATTCGGAATCGCAGCAGAAGCCCCAACCGGAGTCGCAGCCCC GAAGCTGGCGGCGACCGGGAATAA |
| Gene | >Pro_DTO377G3_2|g5046.t1 ATGTCGAACGAGATGGAAATTGACACTCCTGTCGCAAACGACGACGCTCCCGAGCAATCGGACCGCAGTTTTGAA CCACGCACCCAGGGGAACGCGGTCGCCGTGCGCAGTATCGAAGGATGGATTATCATTGTGTCTAATATCCACGAA GAATCGTCGGAGGAGGATGTTACCGAACTCTTTGCAGAGTATGGTGAAATCAAGAACTTCAGCTTGAACCTTGAT CGGCGAACGGGTTATGTCAAGGTGCGCATTCTGAATTTCACAACTACCTCTGAAACGACCCCCAACAACGTTCCT TCTGAAACAAGGGGACCCTTCTTGACTCGCGTCCAATGAAAGGATCACTAACACCACTATTTTGGTAGGGCTACG CATTGATCGAATACTCCACGCTCCCCGAAGCCAGTGAAGCTATCCAGAACCTTAACGGTTACAAGCTCCTCGAAC AGACGCTTCGTGTCGACTATGCTTTTGTCCGCCCGCCCCCATCAGGCAAGAACAAGAATGGAGGGCCAAAGGGCC GTGCTATTCGGAATCGCAGCAGAAGCCCCAACCGGAGTCGCAGCCCCGAAGCTGGCGGCGACCGGGAATAA |