© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5030.t1 |
| Gene name | |
| Location | scaffold_11:371637..373288 |
| Strand | - |
| Gene length (bp) | 1651 |
| Transcript length (bp) | 1545 |
| Coding sequence length (bp) | 1545 |
| Protein length (aa) | 515 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03031 | NIF | NLI interacting factor-like phosphatase | 1.4E-41 | 234 | 381 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 22 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 101.58 | 62.38 | 140.78 |
| 5d_25C | Five days - 25 degrees Celsius | 93.63 | 57.54 | 129.73 |
| 7d_25C | Seven days - 25 degrees Celsius | 93.98 | 57.68 | 130.28 |
| 10d_25C | Ten days - 25 degrees Celsius | 99.16 | 60.83 | 137.48 |
| 7d_15C | Seven days - 15 degrees Celsius | 110.91 | 67.58 | 154.24 |
| 7d_30C | Seven days - 30 degrees Celsius | 84.73 | 51.52 | 117.95 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.778493 | no |
| 3d_25C | 7d_25C | 0.788274 | no |
| 3d_25C | 7d_15C | 0.764657 | no |
| 3d_25C | 7d_30C | 0.471100 | no |
| 3d_25C | 10d_25C | 0.943360 | no |
| 5d_25C | 7d_25C | 0.991911 | no |
| 5d_25C | 7d_15C | 0.508245 | no |
| 5d_25C | 7d_30C | 0.728230 | no |
| 5d_25C | 10d_25C | 0.854094 | no |
| 7d_25C | 7d_15C | 0.522791 | no |
| 7d_25C | 7d_30C | 0.717790 | no |
| 7d_25C | 10d_25C | 0.865981 | no |
| 7d_15C | 7d_30C | 0.246254 | no |
| 7d_15C | 10d_25C | 0.689202 | no |
| 7d_30C | 10d_25C | 0.551237 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5030.t1 MLSRAVLPLTRPNAFASAVRASTLSARPSLYAAYKLSPGIQLRAKSTKPKSKTSKAAPKDAPKDFDAEQPEFDTK AEPTQPSEPVEQPPQTPLPDLTQGIPSTLAAELEGRMKKGPLNLTEDPTQSEDYGAEGRGGGDIPKGGYETSIDR RKARMANIVYAVMLLGGVAGMGYLGRNWETEEEQRQHPEIPSGWSPGLWYSRIKARTSDLTSYYKDPAFPKLLPD EDAEMRQPYTLVLSLEDLLVHSEWTREHGWRVAKRPGVDYFLRYLNQYYELVLFTSVPSMMADQVLRKLDPYRII RWPLFREATRYKDGEYIKDLQYLNRDLSKVILIDTKEEHARYQPENAIILDKWTGDPKDKTLVALIPFLEYLAGM GVEDVRTVLQSFDGTPIPIEFAKREKAMRERFEKDLAEEQKKRPSRGLGNFAAALGLKSSVTLNGEQTPSEGLAQ GKMLWDQIRERGQKNYEMIESEIRQNGEKWLAEMAAEEEKARQEQMQSMKGSFTGIFGAGSKNE* |
| Coding | >Pro_DTO377G3_2|g5030.t1 ATGCTTAGTCGTGCAGTCTTGCCTCTAACGAGGCCAAATGCCTTCGCATCTGCCGTTCGGGCATCAACCCTGTCG GCGCGGCCTTCGTTGTACGCTGCCTACAAGCTTTCCCCGGGTATCCAGCTAAGGGCGAAGTCGACCAAACCGAAG TCGAAAACTTCCAAAGCAGCTCCGAAAGATGCTCCGAAAGACTTCGACGCAGAGCAACCCGAGTTTGATACAAAA GCTGAACCTACACAACCTTCTGAACCTGTCGAACAACCCCCACAGACGCCTCTTCCCGATCTGACGCAAGGTATT CCATCGACGCTAGCCGCAGAATTGGAAGGGCGTATGAAGAAGGGACCATTGAATCTCACAGAAGACCCTACCCAG TCAGAAGATTATGGCGCGGAAGGCAGAGGTGGTGGTGACATCCCCAAAGGCGGATATGAGACATCCATCGACCGC CGCAAGGCCCGTATGGCCAATATAGTATACGCAGTCATGTTGCTTGGTGGTGTCGCTGGTATGGGCTATTTGGGT CGCAACTGGGAAACCGAAGAGGAGCAGCGGCAACACCCTGAGATTCCGTCGGGATGGAGCCCGGGTCTTTGGTAC AGCCGTATCAAAGCCCGCACCAGCGATCTCACCAGCTATTACAAGGACCCTGCTTTCCCCAAGCTGCTTCCGGAT GAGGACGCCGAGATGCGTCAGCCATACACCTTGGTGCTCAGTCTTGAGGATCTCCTTGTTCACAGCGAATGGACC CGTGAGCACGGATGGCGCGTTGCGAAGCGGCCTGGTGTCGACTACTTCCTCCGCTACCTGAACCAATACTATGAG CTCGTCCTGTTCACTAGTGTGCCTAGTATGATGGCCGACCAAGTCCTACGCAAACTCGACCCTTACCGCATCATC CGCTGGCCCCTGTTCCGGGAGGCGACCCGATACAAGGATGGAGAGTACATCAAGGATTTGCAATACCTCAACCGC GACCTTTCCAAAGTTATTCTCATCGACACTAAGGAGGAGCACGCCCGCTACCAGCCCGAGAACGCCATTATTCTT GACAAGTGGACTGGAGACCCGAAAGATAAGACGCTGGTCGCCCTCATCCCCTTCCTGGAATACCTTGCTGGTATG GGTGTCGAAGACGTGCGTACCGTGCTGCAGTCGTTTGATGGCACTCCCATCCCCATTGAGTTTGCCAAGCGTGAG AAGGCGATGCGTGAGCGCTTTGAGAAGGACCTCGCCGAGGAGCAGAAGAAGAGGCCCTCGCGTGGTCTGGGCAAC TTTGCTGCTGCACTTGGCTTGAAGTCTTCTGTCACCCTGAACGGCGAACAGACACCCTCCGAGGGTCTGGCGCAG GGTAAGATGCTCTGGGATCAGATCCGCGAGCGTGGTCAAAAGAACTACGAAATGATCGAGTCAGAGATCCGTCAG AACGGCGAGAAGTGGCTCGCTGAGATGGCAGCCGAGGAGGAGAAGGCCCGCCAGGAGCAGATGCAGAGCATGAAG GGCTCTTTCACCGGCATATTTGGTGCTGGCTCCAAGAATGAGTAA |
| Transcript | >Pro_DTO377G3_2|g5030.t1 ATGCTTAGTCGTGCAGTCTTGCCTCTAACGAGGCCAAATGCCTTCGCATCTGCCGTTCGGGCATCAACCCTGTCG GCGCGGCCTTCGTTGTACGCTGCCTACAAGCTTTCCCCGGGTATCCAGCTAAGGGCGAAGTCGACCAAACCGAAG TCGAAAACTTCCAAAGCAGCTCCGAAAGATGCTCCGAAAGACTTCGACGCAGAGCAACCCGAGTTTGATACAAAA GCTGAACCTACACAACCTTCTGAACCTGTCGAACAACCCCCACAGACGCCTCTTCCCGATCTGACGCAAGGTATT CCATCGACGCTAGCCGCAGAATTGGAAGGGCGTATGAAGAAGGGACCATTGAATCTCACAGAAGACCCTACCCAG TCAGAAGATTATGGCGCGGAAGGCAGAGGTGGTGGTGACATCCCCAAAGGCGGATATGAGACATCCATCGACCGC CGCAAGGCCCGTATGGCCAATATAGTATACGCAGTCATGTTGCTTGGTGGTGTCGCTGGTATGGGCTATTTGGGT CGCAACTGGGAAACCGAAGAGGAGCAGCGGCAACACCCTGAGATTCCGTCGGGATGGAGCCCGGGTCTTTGGTAC AGCCGTATCAAAGCCCGCACCAGCGATCTCACCAGCTATTACAAGGACCCTGCTTTCCCCAAGCTGCTTCCGGAT GAGGACGCCGAGATGCGTCAGCCATACACCTTGGTGCTCAGTCTTGAGGATCTCCTTGTTCACAGCGAATGGACC CGTGAGCACGGATGGCGCGTTGCGAAGCGGCCTGGTGTCGACTACTTCCTCCGCTACCTGAACCAATACTATGAG CTCGTCCTGTTCACTAGTGTGCCTAGTATGATGGCCGACCAAGTCCTACGCAAACTCGACCCTTACCGCATCATC CGCTGGCCCCTGTTCCGGGAGGCGACCCGATACAAGGATGGAGAGTACATCAAGGATTTGCAATACCTCAACCGC GACCTTTCCAAAGTTATTCTCATCGACACTAAGGAGGAGCACGCCCGCTACCAGCCCGAGAACGCCATTATTCTT GACAAGTGGACTGGAGACCCGAAAGATAAGACGCTGGTCGCCCTCATCCCCTTCCTGGAATACCTTGCTGGTATG GGTGTCGAAGACGTGCGTACCGTGCTGCAGTCGTTTGATGGCACTCCCATCCCCATTGAGTTTGCCAAGCGTGAG AAGGCGATGCGTGAGCGCTTTGAGAAGGACCTCGCCGAGGAGCAGAAGAAGAGGCCCTCGCGTGGTCTGGGCAAC TTTGCTGCTGCACTTGGCTTGAAGTCTTCTGTCACCCTGAACGGCGAACAGACACCCTCCGAGGGTCTGGCGCAG GGTAAGATGCTCTGGGATCAGATCCGCGAGCGTGGTCAAAAGAACTACGAAATGATCGAGTCAGAGATCCGTCAG AACGGCGAGAAGTGGCTCGCTGAGATGGCAGCCGAGGAGGAGAAGGCCCGCCAGGAGCAGATGCAGAGCATGAAG GGCTCTTTCACCGGCATATTTGGTGCTGGCTCCAAGAATGAGTAA |
| Gene | >Pro_DTO377G3_2|g5030.t1 ATGCTTAGTCGTGCAGTCTTGCCTCTAACGAGGCCAAATGCCTTCGCATCTGCCGTTCGGGCATCAACCCTGTCG GCGCGGCCTTCGTTGTACGCTGCCTACAAGCTTTCCCCGGGTATCCAGCTAAGGGCGAAGTCGACCAAACCGAAG TCGAAAACTTCCAAAGCAGCTCCGAAAGATGCTCCGAAAGACTTCGACGCAGAGCAACCCGAGTTTGATACAAAA GCTGAACCTACACAACCTTCTGAACCTGTGAGGCTTCTTTCAACTTTCCATTGAAAGGAATCCCTCTGACGTTGT CTTTCTAGGTCGAACAACCCCCACAGACGCCTCTTCCCGATCTGACGCAAGGTATTCCATCGACGCTAGCCGCAG AATTGGAAGGGCGTATGAAGAAGGGACCATTGAATCTCACAGAAGACCCTACCCAGTCAGAAGATTATGGCGCGG AAGGCAGAGGTGGTGGTGACATCCCCAAAGGCGGATATGAGACATCCATCGACCGCCGCAAGGCCCGTATGGCCA ATATAGTATACGCAGTCATGTTGCTTGGTGGTGTCGCTGGTATGGGCTATTTGGGTCGCAACTGGGAAACCGAAG AGGAGCAGCGGCAACACCCTGAGATTCCGTCGGGATGGAGCCCGGGTCTTTGGTACAGCCGTATCAAAGCCCGCA CCAGCGATCTCACCAGCTATTACAAGGACCCTGCTTTCCCCAAGCTGCTTCCGGATGAGGACGCCGAGATGCGTC AGCCATACACCTTGGTGCTCAGTCTTGAGGATCTCCTTGTTCACAGCGAATGGACCCGTGAGCACGGATGGCGCG TTGCGAAGCGGCCTGGTGTCGACTACTTCCTCCGCTACCTGAACCAATACTATGAGCTCGTCCTGTTCACTAGTG TGCCTAGTATGATGGCCGACCAAGTCCTACGCAAACTCGACCCTTACCGCATCATCCGCTGGCCCCTGTTCCGGG AGGCGACCCGATACAAGGATGGAGAGTACATCAAGGTATGTATTCTTCTTTCCCCCCCAGTCATATAATGCTAAT TGTCTGATAGGATTTGCAATACCTCAACCGCGACCTTTCCAAAGTTATTCTCATCGACACTAAGGAGGAGCACGC CCGCTACCAGCCCGAGAACGCCATTATTCTTGACAAGTGGACTGGAGACCCGAAAGATAAGACGCTGGTCGCCCT CATCCCCTTCCTGGAATACCTTGCTGGTATGGGTGTCGAAGACGTGCGTACCGTGCTGCAGTCGTTTGATGGCAC TCCCATCCCCATTGAGTTTGCCAAGCGTGAGAAGGCGATGCGTGAGCGCTTTGAGAAGGACCTCGCCGAGGAGCA GAAGAAGAGGCCCTCGCGTGGTCTGGGCAACTTTGCTGCTGCACTTGGCTTGAAGTCTTCTGTCACCCTGAACGG CGAACAGACACCCTCCGAGGGTCTGGCGCAGGGTAAGATGCTCTGGGATCAGATCCGCGAGCGTGGTCAAAAGAA CTACGAAATGATCGAGTCAGAGATCCGTCAGAACGGCGAGAAGTGGCTCGCTGAGATGGCAGCCGAGGAGGAGAA GGCCCGCCAGGAGCAGATGCAGAGCATGAAGGGCTCTTTCACCGGCATATTTGGTGCTGGCTCCAAGAATGAGTA A |