© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5022.t1 |
| Gene name | |
| Location | scaffold_11:353179..355107 |
| Strand | + |
| Gene length (bp) | 1928 |
| Transcript length (bp) | 1872 |
| Coding sequence length (bp) | 1872 |
| Protein length (aa) | 624 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13738 | Pyr_redox_3 | Pyridine nucleotide-disulphide oxidoreductase | 1.7E-18 | 210 | 412 |
| PF00743 | FMO-like | Flavin-binding monooxygenase-like | 8.1E-12 | 263 | 416 |
| PF07992 | Pyr_redox_2 | Pyridine nucleotide-disulphide oxidoreductase | 6.6E-12 | 209 | 413 |
| PF13434 | Lys_Orn_oxgnase | L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase | 7.8E-06 | 300 | 420 |
| PF13450 | NAD_binding_8 | NAD(P)-binding Rossmann-like domain | 8.7E-05 | 211 | 248 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004499 | N,N-dimethylaniline monooxygenase activity | Yes |
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0050660 | flavin adenine dinucleotide binding | Yes |
| GO:0050661 | NADP binding | Yes |
| GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | No |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| GO:0043168 | anion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0004497 | monooxygenase activity | No |
| GO:0000166 | nucleotide binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | No |
| GO:0043167 | ion binding | No |
| GO:0005488 | binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 5.34 | 1.94 | 8.74 |
| 5d_25C | Five days - 25 degrees Celsius | 4.33 | 1.50 | 7.16 |
| 7d_25C | Seven days - 25 degrees Celsius | 3.70 | 1.13 | 6.26 |
| 10d_25C | Ten days - 25 degrees Celsius | 1.88 | 0.38 | 3.37 |
| 7d_15C | Seven days - 15 degrees Celsius | 3.54 | 1.00 | 6.09 |
| 7d_30C | Seven days - 30 degrees Celsius | 11.24 | 5.20 | 17.29 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.636486 | no |
| 3d_25C | 7d_25C | 0.371672 | no |
| 3d_25C | 7d_15C | 0.326390 | no |
| 3d_25C | 7d_30C | 0.021670 | yes |
| 3d_25C | 10d_25C | 0.006000 | yes |
| 5d_25C | 7d_25C | 0.749114 | no |
| 5d_25C | 7d_15C | 0.684364 | no |
| 5d_25C | 7d_30C | 0.001804 | yes |
| 5d_25C | 10d_25C | 0.033923 | yes |
| 7d_25C | 7d_15C | 0.944157 | no |
| 7d_25C | 7d_30C | 0.000700 | yes |
| 7d_25C | 10d_25C | 0.096602 | no |
| 7d_15C | 7d_30C | 0.001278 | yes |
| 7d_15C | 10d_25C | 0.139508 | no |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5022.t1 MTKSNDLPPSRERVVPGSCNIEPGEFPKTMSESESDVPLDPNTVADRIINQLNSSLSARDKAAVASLFLENCYWR DHLCYSWDFHTLEGSQAIAAFVTEAPPSKIEIDRSSDLKSPHKAPIDFFGDVFGIEFYIKVTTENGQGNGIIRLA EHEGNWYIFTVFTSLIESKGYKENKERPFGVRHGEQQGRKNWRDRRIDEINFEGKDPVVLIIGAGQGGLTAAARL KMLEIDTLVVDREERIGDNWRRRYHQLVLHDPVWYDHMPYLPFPADWPVYTPKDKLADFFETYVKFRELNVWTQT EIKSSSWDENEKRWTVVLERKTENGTETRTLHPRHVIQATGHSGKKNMPVFKGMDDFKGDRLCHSSEHPGANADS KGKKAIVIGSCNSANDIAQDFVEKGYDVTMVQRSSTCVISSESTLEIAFKGLYDASGPPTEDADLHMWSMPSRLF KAQQVKVTKLINQNDAKTIQGLEKAGFKVDSGPSDSGLLMKYFQRGGGYYIDVGGSQLIIDGKVKVKHGQEISQV LPHGLRFEDGSELEADEIVFATGYQNMRTETRVIFGDKVADRVGDIWGLDKEGEMRTIWRRSGHPGFWFMGGNLA LSRYYSRLLALQIKALEEGLTTW* |
| Coding | >Pro_DTO377G3_2|g5022.t1 ATGACAAAATCCAATGACCTACCGCCATCGCGTGAGCGAGTTGTGCCAGGTTCATGCAACATCGAACCTGGCGAA TTCCCTAAGACTATGTCGGAGTCTGAGTCAGATGTTCCCCTAGACCCGAATACTGTTGCAGATAGAATCATCAAC CAGCTGAACTCGAGCCTCTCAGCCAGAGACAAGGCCGCCGTTGCATCACTGTTTCTCGAGAATTGCTACTGGCGT GACCACTTGTGCTATTCATGGGACTTCCACACCCTCGAGGGCAGTCAAGCTATCGCTGCCTTTGTCACCGAGGCA CCGCCCAGCAAAATCGAAATCGACCGATCGTCTGACTTGAAATCCCCACATAAGGCTCCTATTGATTTCTTTGGT GATGTTTTCGGAATCGAATTTTACATCAAAGTCACTACCGAGAATGGACAGGGAAATGGTATTATAAGATTGGCG GAACATGAGGGCAACTGGTACATTTTCACCGTCTTCACTTCCCTGATTGAATCAAAGGGCTACAAGGAGAACAAG GAGAGACCATTTGGTGTCCGACACGGCGAGCAGCAAGGTCGAAAGAACTGGAGAGATCGACGTATTGATGAGATT AACTTTGAAGGAAAGGACCCTGTGGTATTGATCATTGGTGCTGGCCAGGGTGGCTTGACTGCTGCGGCGCGTCTC AAGATGCTCGAGATCGACACCCTCGTCGTCGACCGAGAAGAAAGAATTGGAGACAACTGGCGTCGGCGATACCAC CAACTCGTTCTCCACGATCCAGTGTGGTACGACCACATGCCCTACTTACCTTTCCCGGCCGACTGGCCCGTCTAT ACACCAAAGGATAAGCTAGCGGATTTCTTCGAAACCTACGTTAAGTTCAGAGAGCTTAATGTTTGGACCCAAACC GAGATCAAATCTTCATCATGGGACGAGAACGAGAAGAGATGGACGGTTGTTCTCGAGCGCAAGACAGAAAACGGA ACTGAGACGCGCACTTTGCACCCGCGGCACGTCATCCAAGCTACTGGCCACTCTGGCAAGAAAAACATGCCTGTT TTCAAAGGAATGGATGATTTCAAGGGAGATCGTTTGTGTCACAGCTCGGAGCATCCTGGCGCCAATGCCGACTCA AAGGGGAAAAAGGCCATTGTCATTGGATCTTGTAACTCGGCAAACGATATCGCCCAGGACTTTGTCGAGAAAGGG TACGATGTGACCATGGTGCAGCGAAGCTCTACCTGTGTGATATCGTCTGAATCTACTTTGGAAATTGCCTTCAAA GGGCTCTATGACGCAAGCGGCCCACCAACCGAGGACGCCGATCTTCATATGTGGAGCATGCCATCGCGTCTGTTC AAAGCGCAACAAGTCAAAGTCACCAAGCTCATAAACCAGAACGATGCAAAGACCATTCAAGGATTGGAAAAGGCA GGCTTCAAGGTTGACAGCGGACCCTCGGACAGCGGTCTCCTAATGAAGTACTTCCAGCGCGGAGGCGGTTACTAT ATTGATGTCGGTGGAAGCCAGCTCATTATCGATGGGAAGGTAAAGGTGAAGCATGGCCAGGAAATTAGCCAAGTG CTTCCCCATGGACTCCGGTTTGAGGATGGCTCAGAGCTCGAAGCCGATGAAATCGTGTTCGCTACTGGGTACCAG AATATGAGAACCGAGACTCGCGTGATATTTGGCGACAAGGTTGCTGACAGGGTTGGTGATATCTGGGGACTTGAT AAAGAGGGTGAAATGCGGACTATCTGGCGGCGGAGTGGTCACCCTGGATTCTGGTTTATGGGTGGGAATCTCGCT CTTAGCAGATACTACTCGCGTCTACTGGCATTGCAGATCAAAGCGCTGGAAGAGGGATTGACTACTTGGTAG |
| Transcript | >Pro_DTO377G3_2|g5022.t1 ATGACAAAATCCAATGACCTACCGCCATCGCGTGAGCGAGTTGTGCCAGGTTCATGCAACATCGAACCTGGCGAA TTCCCTAAGACTATGTCGGAGTCTGAGTCAGATGTTCCCCTAGACCCGAATACTGTTGCAGATAGAATCATCAAC CAGCTGAACTCGAGCCTCTCAGCCAGAGACAAGGCCGCCGTTGCATCACTGTTTCTCGAGAATTGCTACTGGCGT GACCACTTGTGCTATTCATGGGACTTCCACACCCTCGAGGGCAGTCAAGCTATCGCTGCCTTTGTCACCGAGGCA CCGCCCAGCAAAATCGAAATCGACCGATCGTCTGACTTGAAATCCCCACATAAGGCTCCTATTGATTTCTTTGGT GATGTTTTCGGAATCGAATTTTACATCAAAGTCACTACCGAGAATGGACAGGGAAATGGTATTATAAGATTGGCG GAACATGAGGGCAACTGGTACATTTTCACCGTCTTCACTTCCCTGATTGAATCAAAGGGCTACAAGGAGAACAAG GAGAGACCATTTGGTGTCCGACACGGCGAGCAGCAAGGTCGAAAGAACTGGAGAGATCGACGTATTGATGAGATT AACTTTGAAGGAAAGGACCCTGTGGTATTGATCATTGGTGCTGGCCAGGGTGGCTTGACTGCTGCGGCGCGTCTC AAGATGCTCGAGATCGACACCCTCGTCGTCGACCGAGAAGAAAGAATTGGAGACAACTGGCGTCGGCGATACCAC CAACTCGTTCTCCACGATCCAGTGTGGTACGACCACATGCCCTACTTACCTTTCCCGGCCGACTGGCCCGTCTAT ACACCAAAGGATAAGCTAGCGGATTTCTTCGAAACCTACGTTAAGTTCAGAGAGCTTAATGTTTGGACCCAAACC GAGATCAAATCTTCATCATGGGACGAGAACGAGAAGAGATGGACGGTTGTTCTCGAGCGCAAGACAGAAAACGGA ACTGAGACGCGCACTTTGCACCCGCGGCACGTCATCCAAGCTACTGGCCACTCTGGCAAGAAAAACATGCCTGTT TTCAAAGGAATGGATGATTTCAAGGGAGATCGTTTGTGTCACAGCTCGGAGCATCCTGGCGCCAATGCCGACTCA AAGGGGAAAAAGGCCATTGTCATTGGATCTTGTAACTCGGCAAACGATATCGCCCAGGACTTTGTCGAGAAAGGG TACGATGTGACCATGGTGCAGCGAAGCTCTACCTGTGTGATATCGTCTGAATCTACTTTGGAAATTGCCTTCAAA GGGCTCTATGACGCAAGCGGCCCACCAACCGAGGACGCCGATCTTCATATGTGGAGCATGCCATCGCGTCTGTTC AAAGCGCAACAAGTCAAAGTCACCAAGCTCATAAACCAGAACGATGCAAAGACCATTCAAGGATTGGAAAAGGCA GGCTTCAAGGTTGACAGCGGACCCTCGGACAGCGGTCTCCTAATGAAGTACTTCCAGCGCGGAGGCGGTTACTAT ATTGATGTCGGTGGAAGCCAGCTCATTATCGATGGGAAGGTAAAGGTGAAGCATGGCCAGGAAATTAGCCAAGTG CTTCCCCATGGACTCCGGTTTGAGGATGGCTCAGAGCTCGAAGCCGATGAAATCGTGTTCGCTACTGGGTACCAG AATATGAGAACCGAGACTCGCGTGATATTTGGCGACAAGGTTGCTGACAGGGTTGGTGATATCTGGGGACTTGAT AAAGAGGGTGAAATGCGGACTATCTGGCGGCGGAGTGGTCACCCTGGATTCTGGTTTATGGGTGGGAATCTCGCT CTTAGCAGATACTACTCGCGTCTACTGGCATTGCAGATCAAAGCGCTGGAAGAGGGATTGACTACTTGGTAG |
| Gene | >Pro_DTO377G3_2|g5022.t1 ATGACAAAATCCAATGACCTACCGCCATCGCGTGAGCGAGTTGTGCCAGGTTCATGCAACATCGAACCTGGCGAA TTCCCTAAGACTATGTCGGAGTCTGAGTCAGATGTTCCCCTAGACCCGAATACTGTTGCAGATAGAATCATCAAC CAGCTGAACTCGAGCCTCTCAGCCAGAGACAAGGCCGCCGTTGCATCACTGTTTCTCGAGAATTGCTACTGGCGT GACCACTTGTGCTATTCATGGGACTTCCACACCCTCGAGGGCAGTCAAGCTATCGCTGCCTTTGTCACCGAGGCA CCGCCCAGCAAAATCGAAATCGACCGATCGTCTGACTTGAAATCCCCACATAAGGCTCCTATTGATTTCTTTGGT GATGTTTTCGGAATCGAATTTTACATCAAAGTCACTACCGAGAATGGACAGGGAAATGGTATTATAAGATTGGCG GAACATGAGGGCAACTGGTACATTTTCACCGTCTTCACTTCCCTGATTGAATCAAAGGGCTACAAGGAGAACAAG GAGAGACCATTTGGTGTCCGACACGGCGAGCAGCAAGGTCGAAAGAACTGGAGAGATCGACGTATTGATGAGATT AACTTTGAAGGAAAGGACCCTGTGGTATTGATCATTGGTATGTGTCGATGAAGCTTTTCCCTAGAAGTATAAGAT CTGACTTGAGGAGGGAAGGTGCTGGCCAGGGTGGCTTGACTGCTGCGGCGCGTCTCAAGATGCTCGAGATCGACA CCCTCGTCGTCGACCGAGAAGAAAGAATTGGAGACAACTGGCGTCGGCGATACCACCAACTCGTTCTCCACGATC CAGTGTGGTACGACCACATGCCCTACTTACCTTTCCCGGCCGACTGGCCCGTCTATACACCAAAGGATAAGCTAG CGGATTTCTTCGAAACCTACGTTAAGTTCAGAGAGCTTAATGTTTGGACCCAAACCGAGATCAAATCTTCATCAT GGGACGAGAACGAGAAGAGATGGACGGTTGTTCTCGAGCGCAAGACAGAAAACGGAACTGAGACGCGCACTTTGC ACCCGCGGCACGTCATCCAAGCTACTGGCCACTCTGGCAAGAAAAACATGCCTGTTTTCAAAGGAATGGATGATT TCAAGGGAGATCGTTTGTGTCACAGCTCGGAGCATCCTGGCGCCAATGCCGACTCAAAGGGGAAAAAGGCCATTG TCATTGGATCTTGTAACTCGGCAAACGATATCGCCCAGGACTTTGTCGAGAAAGGGTACGATGTGACCATGGTGC AGCGAAGCTCTACCTGTGTGATATCGTCTGAATCTACTTTGGAAATTGCCTTCAAAGGGCTCTATGACGCAAGCG GCCCACCAACCGAGGACGCCGATCTTCATATGTGGAGCATGCCATCGCGTCTGTTCAAAGCGCAACAAGTCAAAG TCACCAAGCTCATAAACCAGAACGATGCAAAGACCATTCAAGGATTGGAAAAGGCAGGCTTCAAGGTTGACAGCG GACCCTCGGACAGCGGTCTCCTAATGAAGTACTTCCAGCGCGGAGGCGGTTACTATATTGATGTCGGTGGAAGCC AGCTCATTATCGATGGGAAGGTAAAGGTGAAGCATGGCCAGGAAATTAGCCAAGTGCTTCCCCATGGACTCCGGT TTGAGGATGGCTCAGAGCTCGAAGCCGATGAAATCGTGTTCGCTACTGGGTACCAGAATATGAGAACCGAGACTC GCGTGATATTTGGCGACAAGGTTGCTGACAGGGTTGGTGATATCTGGGGACTTGATAAAGAGGGTGAAATGCGGA CTATCTGGCGGCGGAGTGGTCACCCTGGATTCTGGTTTATGGGTGGGAATCTCGCTCTTAGCAGATACTACTCGC GTCTACTGGCATTGCAGATCAAAGCGCTGGAAGAGGGATTGACTACTTGGTAG |