Fungal Genomics

at Utrecht University

General Properties

Protein ID	Pro_DTO377G3_2\|g5004.t1
Gene name
Location	scaffold_11:297853..299611
Strand	-
Gene length (bp)	1758
Transcript length (bp)	1680
Coding sequence length (bp)	1680
Protein length (aa)	560

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00096	zf-C2H2	Zinc finger, C2H2 type	1.3E-04	447	470
PF00096	zf-C2H2	Zinc finger, C2H2 type	2.1E-06	476	498

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 67	0.45

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class (based on PFAM domains)
C2H2 zinc finger

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
3d_25C	Three days - 25 degrees Celsius	3.55	0.97	6.13
5d_25C	Five days - 25 degrees Celsius	2.84	0.60	5.07
7d_25C	Seven days - 25 degrees Celsius	4.32	0.99	7.65
10d_25C	Ten days - 25 degrees Celsius	2.38	0.39	4.37
7d_15C	Seven days - 15 degrees Celsius	3.18	0.29	6.08
7d_30C	Seven days - 30 degrees Celsius	8.48	3.16	13.81

Differential expression

Label1	Label2	Q-value	Significant difference
3d_25C	5d_25C	0.681025	no
3d_25C	7d_25C	0.720686	no
3d_25C	7d_15C	0.868461	no
3d_25C	7d_30C	0.016361	yes
3d_25C	10d_25C	0.419061	no
5d_25C	7d_25C	0.393825	no
5d_25C	7d_15C	0.863968	no
5d_25C	7d_30C	0.006000	yes
5d_25C	10d_25C	0.775953	no
7d_25C	7d_15C	0.596814	no
7d_25C	7d_30C	0.088027	no
7d_25C	10d_25C	0.203425	no
7d_15C	7d_30C	0.028871	yes
7d_15C	10d_25C	0.631793	no
7d_30C	10d_25C	0.001804	yes

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Pro_DTO377G3_2\|g5004.t1 MDSPYNMAPTSVQGQPFAYYSDSQRQGHYQSDIPYYSQMQYGQEQPLYTSQPMMNMHQMATTNAFRGATMSLTPI ASPQPSQMKPTIIMQQGSPGLMPLDTRFIGHDLYSFPSTPPLSASGSTISSPPSAHGALPTPIHDTFFTFDKVEG VKEGCETDVHQELLATPQWARSDSPPMTPVFIHPPSLNHMHSDLLSATSCPSLSPSPSPVPTDILASHNLGSSQS FCDPRQLTVEPCVHVHAQDLPPLPNLSCEEEEPRAVVGSASVTLPVNENPSPSFSSSTQDPLSSLPTFDSFSDLD SDDELNRLVEFHPAANAVYMGGKRQRMHAYLVEDDGFLSEHSLEDSDDSETFLPNGLPSFEWTQTAHPQAESEEE PIEEPKIKKRSNRKSRKTAADEEAEAKALAACESSGDCCSDDGSVDDSESAPISVNRRGRKQSLTEDPSKTFVCT LCSRRFRRQEHLKRHYRSLHTQDKPFECNECGKKFSRSDNLAQHARTHGGGSIVMGVLDASDAGSVSFDDQHDAG ALGQVMYEAARSTEVIGTPPVDRRAAKKRKRDLS*
Coding	>Pro_DTO377G3_2\|g5004.t1 ATGGACTCACCATACAATATGGCACCCACCTCGGTGCAAGGCCAGCCATTCGCATACTACTCCGACTCACAGAGA CAAGGCCACTACCAGTCAGACATCCCATACTACAGCCAGATGCAGTATGGCCAAGAGCAACCGCTCTACACGTCC CAGCCCATGATGAACATGCACCAGATGGCCACCACCAATGCCTTCCGGGGAGCTACCATGAGCCTGACACCGATT GCCTCTCCACAGCCCTCACAAATGAAGCCCACCATCATCATGCAGCAGGGTTCGCCCGGCTTGATGCCCTTGGAC ACTCGCTTTATTGGTCACGACTTGTACTCCTTCCCCTCGACTCCTCCGCTGTCCGCCTCGGGAAGCACCATCAGC AGCCCCCCGTCTGCTCATGGCGCCCTACCAACCCCGATTCATGACACATTTTTCACCTTCGACAAGGTCGAGGGT GTCAAGGAGGGATGCGAGACCGACGTGCACCAGGAGCTCCTGGCCACACCGCAGTGGGCGCGCTCTGATTCGCCC CCGATGACGCCTGTCTTCATTCACCCCCCTTCTCTTAATCACATGCACTCCGACCTTCTGTCTGCAACATCCTGC CCCTCGCTTTCCCCCTCCCCCTCACCCGTGCCCACCGACATTCTTGCCTCCCACAATCTGGGATCGAGCCAGTCT TTCTGCGATCCCCGCCAGCTTACCGTTGAGCCCTGTGTTCACGTTCACGCACAGGATCTCCCTCCTCTACCGAAT CTCTCATGCGAGGAGGAGGAACCTCGCGCCGTTGTTGGCAGTGCGTCTGTGACGCTCCCCGTTAACGAGAACCCA TCTCCCTCTTTCAGCTCCTCGACCCAGGATCCTCTGAGCTCGCTGCCGACTTTTGACAGCTTCTCAGACCTCGAT TCTGATGACGAGTTGAATCGCCTGGTGGAATTCCACCCTGCCGCCAATGCCGTCTACATGGGTGGCAAGCGCCAG CGTATGCACGCCTACCTGGTGGAGGATGATGGATTCCTGAGCGAGCACAGCCTCGAAGACTCAGATGATTCCGAG ACTTTCTTGCCCAATGGTTTGCCATCCTTTGAGTGGACCCAGACTGCTCACCCTCAGGCCGAGAGCGAGGAGGAA CCCATCGAGGAGCCCAAGATCAAGAAGCGTAGCAACCGCAAGTCCCGTAAGACCGCTGCCGACGAAGAGGCTGAG GCAAAGGCGCTGGCCGCCTGCGAGTCCTCTGGCGACTGCTGCTCTGATGACGGATCAGTTGATGATTCCGAGTCT GCTCCTATCTCAGTCAACCGCCGGGGCCGCAAGCAGTCTTTGACCGAAGACCCCTCCAAGACCTTTGTCTGCACT CTGTGCTCCCGTCGCTTCCGTCGCCAGGAACACCTCAAGCGCCACTACCGCTCTCTCCACACTCAGGACAAGCCG TTCGAGTGCAACGAGTGTGGCAAGAAGTTCTCCCGCAGTGACAACCTCGCACAGCACGCCCGCACCCACGGTGGT GGCTCCATTGTCATGGGAGTTCTGGATGCAAGCGACGCTGGTTCTGTCTCATTCGACGATCAACATGACGCTGGT GCCCTTGGCCAAGTCATGTACGAGGCTGCCCGGTCTACTGAAGTCATCGGTACTCCCCCCGTGGATCGCCGAGCA GCGAAGAAGCGCAAGCGTGACTTGTCCTAA
Transcript	>Pro_DTO377G3_2\|g5004.t1 ATGGACTCACCATACAATATGGCACCCACCTCGGTGCAAGGCCAGCCATTCGCATACTACTCCGACTCACAGAGA CAAGGCCACTACCAGTCAGACATCCCATACTACAGCCAGATGCAGTATGGCCAAGAGCAACCGCTCTACACGTCC CAGCCCATGATGAACATGCACCAGATGGCCACCACCAATGCCTTCCGGGGAGCTACCATGAGCCTGACACCGATT GCCTCTCCACAGCCCTCACAAATGAAGCCCACCATCATCATGCAGCAGGGTTCGCCCGGCTTGATGCCCTTGGAC ACTCGCTTTATTGGTCACGACTTGTACTCCTTCCCCTCGACTCCTCCGCTGTCCGCCTCGGGAAGCACCATCAGC AGCCCCCCGTCTGCTCATGGCGCCCTACCAACCCCGATTCATGACACATTTTTCACCTTCGACAAGGTCGAGGGT GTCAAGGAGGGATGCGAGACCGACGTGCACCAGGAGCTCCTGGCCACACCGCAGTGGGCGCGCTCTGATTCGCCC CCGATGACGCCTGTCTTCATTCACCCCCCTTCTCTTAATCACATGCACTCCGACCTTCTGTCTGCAACATCCTGC CCCTCGCTTTCCCCCTCCCCCTCACCCGTGCCCACCGACATTCTTGCCTCCCACAATCTGGGATCGAGCCAGTCT TTCTGCGATCCCCGCCAGCTTACCGTTGAGCCCTGTGTTCACGTTCACGCACAGGATCTCCCTCCTCTACCGAAT CTCTCATGCGAGGAGGAGGAACCTCGCGCCGTTGTTGGCAGTGCGTCTGTGACGCTCCCCGTTAACGAGAACCCA TCTCCCTCTTTCAGCTCCTCGACCCAGGATCCTCTGAGCTCGCTGCCGACTTTTGACAGCTTCTCAGACCTCGAT TCTGATGACGAGTTGAATCGCCTGGTGGAATTCCACCCTGCCGCCAATGCCGTCTACATGGGTGGCAAGCGCCAG CGTATGCACGCCTACCTGGTGGAGGATGATGGATTCCTGAGCGAGCACAGCCTCGAAGACTCAGATGATTCCGAG ACTTTCTTGCCCAATGGTTTGCCATCCTTTGAGTGGACCCAGACTGCTCACCCTCAGGCCGAGAGCGAGGAGGAA CCCATCGAGGAGCCCAAGATCAAGAAGCGTAGCAACCGCAAGTCCCGTAAGACCGCTGCCGACGAAGAGGCTGAG GCAAAGGCGCTGGCCGCCTGCGAGTCCTCTGGCGACTGCTGCTCTGATGACGGATCAGTTGATGATTCCGAGTCT GCTCCTATCTCAGTCAACCGCCGGGGCCGCAAGCAGTCTTTGACCGAAGACCCCTCCAAGACCTTTGTCTGCACT CTGTGCTCCCGTCGCTTCCGTCGCCAGGAACACCTCAAGCGCCACTACCGCTCTCTCCACACTCAGGACAAGCCG TTCGAGTGCAACGAGTGTGGCAAGAAGTTCTCCCGCAGTGACAACCTCGCACAGCACGCCCGCACCCACGGTGGT GGCTCCATTGTCATGGGAGTTCTGGATGCAAGCGACGCTGGTTCTGTCTCATTCGACGATCAACATGACGCTGGT GCCCTTGGCCAAGTCATGTACGAGGCTGCCCGGTCTACTGAAGTCATCGGTACTCCCCCCGTGGATCGCCGAGCA GCGAAGAAGCGCAAGCGTGACTTGTCCTAA
Gene	>Pro_DTO377G3_2\|g5004.t1 ATGGACTCACCATACAATATGGCACCCACCTCGGTGCAAGGCCAGCCATTCGCATACTACTCCGACTCACAGAGA CAAGGCCACTACCAGTCAGACATCCCATACTACAGCCAGATGCAGTATGGCCAAGAGCAACCGCTCTACACGTCC CAGCCCATGATGAACATGCACCAGATGGCCACCACCAATGCCTTCCGGGGAGCTACCATGAGCCTGACACCGATT GCCTCTCCACAGCCCTCACAAATGAAGCCCACCATCATCATGCAGCAGGGTTCGCCCGGCTTGATGCCCTTGGAC ACTCGCTTTATTGGTCACGACTTGTACTCCTTCCCCTCGACTCCTCCGCTGTCCGCCTCGGGAAGCACCATCAGC AGCCCCCCGTCTGCTCATGGCGCCCTACCAACCCCGATTCATGACACATTTTTCACCTTCGACAAGGTCGAGGGT GTCAAGGAGGGATGCGAGACCGACGTGCACCAGGAGCTCCTGGCCACACCGCAGTGGGCGCGCTCTGATTCGCCC CCGATGACGCCTGGTGAGTTTTATAGATCACACTTTGATAACGGAATGTGGATCGTGGGAAGCAAGGGCGAAAGG CTAATTCATCCTACAGTCTTCATTCACCCCCCTTCTCTTAATCACATGCACTCCGACCTTCTGTCTGCAACATCC TGCCCCTCGCTTTCCCCCTCCCCCTCACCCGTGCCCACCGACATTCTTGCCTCCCACAATCTGGGATCGAGCCAG TCTTTCTGCGATCCCCGCCAGCTTACCGTTGAGCCCTGTGTTCACGTTCACGCACAGGATCTCCCTCCTCTACCG AATCTCTCATGCGAGGAGGAGGAACCTCGCGCCGTTGTTGGCAGTGCGTCTGTGACGCTCCCCGTTAACGAGAAC CCATCTCCCTCTTTCAGCTCCTCGACCCAGGATCCTCTGAGCTCGCTGCCGACTTTTGACAGCTTCTCAGACCTC GATTCTGATGACGAGTTGAATCGCCTGGTGGAATTCCACCCTGCCGCCAATGCCGTCTACATGGGTGGCAAGCGC CAGCGTATGCACGCCTACCTGGTGGAGGATGATGGATTCCTGAGCGAGCACAGCCTCGAAGACTCAGATGATTCC GAGACTTTCTTGCCCAATGGTTTGCCATCCTTTGAGTGGACCCAGACTGCTCACCCTCAGGCCGAGAGCGAGGAG GAACCCATCGAGGAGCCCAAGATCAAGAAGCGTAGCAACCGCAAGTCCCGTAAGACCGCTGCCGACGAAGAGGCT GAGGCAAAGGCGCTGGCCGCCTGCGAGTCCTCTGGCGACTGCTGCTCTGATGACGGATCAGTTGATGATTCCGAG TCTGCTCCTATCTCAGTCAACCGCCGGGGCCGCAAGCAGTCTTTGACCGAAGACCCCTCCAAGACCTTTGTCTGC ACTCTGTGCTCCCGTCGCTTCCGTCGCCAGGAACACCTCAAGCGCCACTACCGCTCTCTCCACACTCAGGACAAG CCGTTCGAGTGCAACGAGTGTGGCAAGAAGTTCTCCCGCAGTGACAACCTCGCACAGCACGCCCGCACCCACGGT GGTGGCTCCATTGTCATGGGAGTTCTGGATGCAAGCGACGCTGGTTCTGTCTCATTCGACGATCAACATGACGCT GGTGCCCTTGGCCAAGTCATGTACGAGGCTGCCCGGTCTACTGAAGTCATCGGTACTCCCCCCGTGGATCGCCGA GCAGCGAAGAAGCGCAAGCGTGACTTGTCCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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