© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5.t1 |
| Gene name | |
| Location | scaffold_01:15278..17471 |
| Strand | - |
| Gene length (bp) | 2193 |
| Transcript length (bp) | 2142 |
| Coding sequence length (bp) | 2142 |
| Protein length (aa) | 714 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00096 | zf-C2H2 | Zinc finger, C2H2 type | 3.8E-03 | 414 | 436 |
| PF13912 | zf-C2H2_6 | C2H2-type zinc finger | 1.3E-02 | 414 | 436 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| C2H2 zinc finger |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 46.42 | 27.84 | 65.00 |
| 5d_25C | Five days - 25 degrees Celsius | 30.65 | 17.56 | 43.75 |
| 7d_25C | Seven days - 25 degrees Celsius | 21.85 | 12.01 | 31.68 |
| 10d_25C | Ten days - 25 degrees Celsius | 24.44 | 13.91 | 34.97 |
| 7d_15C | Seven days - 15 degrees Celsius | 25.15 | 12.90 | 37.39 |
| 7d_30C | Seven days - 30 degrees Celsius | 39.44 | 22.18 | 56.70 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.064808 | no |
| 3d_25C | 7d_25C | 0.000700 | yes |
| 3d_25C | 7d_15C | 0.010411 | yes |
| 3d_25C | 7d_30C | 0.566148 | no |
| 3d_25C | 10d_25C | 0.001278 | yes |
| 5d_25C | 7d_25C | 0.179756 | no |
| 5d_25C | 7d_15C | 0.516232 | no |
| 5d_25C | 7d_30C | 0.342746 | no |
| 5d_25C | 10d_25C | 0.402877 | no |
| 7d_25C | 7d_15C | 0.675351 | no |
| 7d_25C | 7d_30C | 0.009446 | yes |
| 7d_25C | 10d_25C | 0.724555 | no |
| 7d_15C | 7d_30C | 0.080003 | no |
| 7d_15C | 10d_25C | 0.941538 | no |
| 7d_30C | 10d_25C | 0.037351 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5.t1 MNSNALGTGRHRRQISTPVAPYQPVMTNMQPHRSHRRGQTVDYNSFSQQPNVDRHMPKTVSQLRDYFNEKSGFSY QPRDVQQYQSYAQQPEQAFIPHGMHMQQPYQYQQQSLGSDCQAFNQEQLQAIHTTTGSPAPSSIGAPALSRSASE SSENTPLKRALHRMQQEQFSNQQQQQYVGNADWELYSRRNMPIIQNEQVTAYAGPMHPVSVQPKAPSAKILSQMS TAYSPLTPDSTPLKRSIDYSMYSNVPTPSKSQSFSFPHNPATAEMQRAQSFQGAYVNSVQIKQQMPSPVNSPIST FAEIADMPSPSSYGMTPQNSNISITSSTGRTKKRAPSTVSSPIELAAHDDDLDARVKASVQETGVSTDEIAKFIS GPDPKDGKWVCLFTGCLCRFGRKENIKSHVQTHLGDRQFKCDICEKHFVRGHDLKRHLKTHSGNKPFACACGASF ARQDALTRHRQRDMCVGGFTGVVPKTTKRGRPPKKKNSRPDLDTRQAKSTRTRQRVAEKSTSNGSAQTHATLQDA PVFNSPNYAPSSAVSSYTPPTSPGDRYHTMSPPCHTYNPVNARLEDDMLPLSPPQLAHARYEQAMAQYASNFSSQ TYSQESTYSQESLYSESALSPREMSSPRSAPTLAESSVSSEIDIFMTQDPSEDLRQEFGHLAHSGIPGFPTYQFV DATDFAPVSSYYPEKTFSGIDDLTDPIDCLSSEFLVDP* |
| Coding | >Pro_DTO377G3_2|g5.t1 ATGAACTCCAACGCGCTGGGAACCGGTCGTCACCGCCGTCAAATCTCCACCCCAGTTGCTCCATACCAACCAGTC ATGACCAATATGCAACCCCATCGGTCACATCGTCGAGGCCAGACTGTGGACTACAACTCCTTCAGTCAACAGCCC AATGTCGACCGACACATGCCGAAGACGGTCTCGCAGTTGCGAGATTATTTTAACGAAAAATCAGGTTTCTCATAT CAACCGAGGGATGTACAGCAGTATCAATCCTATGCCCAGCAGCCCGAGCAGGCTTTCATCCCACATGGCATGCAC ATGCAGCAGCCATATCAATATCAACAACAGTCGCTCGGGTCTGACTGCCAGGCTTTCAACCAAGAACAATTGCAA GCGATCCACACCACCACTGGCAGCCCTGCGCCCTCGTCCATCGGTGCTCCGGCCTTGTCCCGATCAGCCAGTGAG AGCTCCGAAAATACACCATTGAAGCGTGCGCTGCACCGTATGCAACAAGAGCAATTCTCGAACCAACAACAGCAA CAATATGTCGGCAATGCCGATTGGGAATTGTACTCTCGGCGCAACATGCCAATCATCCAAAACGAGCAGGTGACG GCCTATGCCGGACCAATGCACCCAGTCTCTGTTCAACCAAAGGCTCCATCTGCGAAAATTCTTTCGCAAATGTCT ACTGCTTACTCCCCCTTGACCCCCGATTCTACCCCATTGAAAAGATCTATTGATTATTCCATGTACAGCAATGTC CCAACACCTTCCAAGTCCCAAAGTTTCTCATTCCCCCATAACCCCGCTACTGCTGAGATGCAGAGAGCGCAGTCT TTTCAAGGAGCCTATGTCAATTCTGTGCAGATTAAGCAGCAAATGCCCTCTCCGGTCAATTCCCCGATTAGCACG TTCGCCGAAATTGCCGATATGCCATCCCCGAGTTCATATGGAATGACGCCTCAAAATTCCAATATCTCAATCACA TCTTCCACTGGCAGAACCAAAAAACGTGCCCCGTCTACTGTGTCGTCTCCCATCGAGCTAGCCGCTCACGATGAT GACCTTGACGCCCGAGTCAAGGCCTCAGTCCAGGAAACCGGCGTTTCGACTGACGAGATTGCCAAGTTCATCTCC GGCCCCGACCCCAAAGATGGAAAGTGGGTCTGTCTATTTACAGGCTGCCTTTGCCGCTTTGGTCGCAAGGAAAAC ATCAAGTCCCACGTCCAAACACACCTCGGAGACCGTCAATTCAAATGCGACATTTGCGAAAAGCACTTTGTGCGC GGACACGATCTCAAGCGCCATCTCAAGACACACAGTGGCAATAAGCCCTTCGCCTGTGCCTGTGGCGCCAGCTTT GCTCGACAGGATGCCCTAACTCGGCACCGCCAGCGCGATATGTGTGTTGGAGGCTTCACCGGTGTAGTTCCAAAG ACCACCAAGCGCGGTCGCCCCCCGAAGAAGAAGAACAGCCGTCCGGATCTCGATACTCGCCAGGCCAAGTCCACT CGTACTCGTCAACGTGTTGCTGAAAAATCCACCTCAAACGGTTCAGCCCAGACCCATGCCACTCTGCAAGATGCT CCCGTGTTCAACTCGCCCAACTATGCCCCATCCAGTGCCGTCTCATCCTATACGCCGCCCACCTCTCCCGGAGAC AGATACCACACAATGTCCCCGCCATGCCACACCTACAACCCCGTGAATGCCCGGCTCGAGGATGACATGCTGCCC TTGTCACCACCTCAACTCGCCCACGCTAGATACGAACAGGCAATGGCTCAGTACGCATCGAATTTCAGCTCGCAG ACATACTCGCAGGAATCCACGTACTCGCAGGAATCTCTCTATAGTGAATCTGCCCTCTCGCCTCGGGAGATGTCT TCCCCTCGGTCGGCGCCCACTCTGGCCGAATCATCCGTCAGCTCGGAGATCGATATCTTCATGACCCAAGATCCC TCCGAGGACTTGCGACAGGAGTTCGGTCATCTCGCTCACTCGGGCATCCCTGGTTTCCCGACTTATCAATTCGTC GATGCAACCGACTTCGCCCCTGTCTCGTCATATTATCCCGAGAAGACCTTCTCTGGTATTGATGACCTGACGGAC CCAATCGACTGCTTGTCCAGCGAGTTCCTAGTGGACCCTTGA |
| Transcript | >Pro_DTO377G3_2|g5.t1 ATGAACTCCAACGCGCTGGGAACCGGTCGTCACCGCCGTCAAATCTCCACCCCAGTTGCTCCATACCAACCAGTC ATGACCAATATGCAACCCCATCGGTCACATCGTCGAGGCCAGACTGTGGACTACAACTCCTTCAGTCAACAGCCC AATGTCGACCGACACATGCCGAAGACGGTCTCGCAGTTGCGAGATTATTTTAACGAAAAATCAGGTTTCTCATAT CAACCGAGGGATGTACAGCAGTATCAATCCTATGCCCAGCAGCCCGAGCAGGCTTTCATCCCACATGGCATGCAC ATGCAGCAGCCATATCAATATCAACAACAGTCGCTCGGGTCTGACTGCCAGGCTTTCAACCAAGAACAATTGCAA GCGATCCACACCACCACTGGCAGCCCTGCGCCCTCGTCCATCGGTGCTCCGGCCTTGTCCCGATCAGCCAGTGAG AGCTCCGAAAATACACCATTGAAGCGTGCGCTGCACCGTATGCAACAAGAGCAATTCTCGAACCAACAACAGCAA CAATATGTCGGCAATGCCGATTGGGAATTGTACTCTCGGCGCAACATGCCAATCATCCAAAACGAGCAGGTGACG GCCTATGCCGGACCAATGCACCCAGTCTCTGTTCAACCAAAGGCTCCATCTGCGAAAATTCTTTCGCAAATGTCT ACTGCTTACTCCCCCTTGACCCCCGATTCTACCCCATTGAAAAGATCTATTGATTATTCCATGTACAGCAATGTC CCAACACCTTCCAAGTCCCAAAGTTTCTCATTCCCCCATAACCCCGCTACTGCTGAGATGCAGAGAGCGCAGTCT TTTCAAGGAGCCTATGTCAATTCTGTGCAGATTAAGCAGCAAATGCCCTCTCCGGTCAATTCCCCGATTAGCACG TTCGCCGAAATTGCCGATATGCCATCCCCGAGTTCATATGGAATGACGCCTCAAAATTCCAATATCTCAATCACA TCTTCCACTGGCAGAACCAAAAAACGTGCCCCGTCTACTGTGTCGTCTCCCATCGAGCTAGCCGCTCACGATGAT GACCTTGACGCCCGAGTCAAGGCCTCAGTCCAGGAAACCGGCGTTTCGACTGACGAGATTGCCAAGTTCATCTCC GGCCCCGACCCCAAAGATGGAAAGTGGGTCTGTCTATTTACAGGCTGCCTTTGCCGCTTTGGTCGCAAGGAAAAC ATCAAGTCCCACGTCCAAACACACCTCGGAGACCGTCAATTCAAATGCGACATTTGCGAAAAGCACTTTGTGCGC GGACACGATCTCAAGCGCCATCTCAAGACACACAGTGGCAATAAGCCCTTCGCCTGTGCCTGTGGCGCCAGCTTT GCTCGACAGGATGCCCTAACTCGGCACCGCCAGCGCGATATGTGTGTTGGAGGCTTCACCGGTGTAGTTCCAAAG ACCACCAAGCGCGGTCGCCCCCCGAAGAAGAAGAACAGCCGTCCGGATCTCGATACTCGCCAGGCCAAGTCCACT CGTACTCGTCAACGTGTTGCTGAAAAATCCACCTCAAACGGTTCAGCCCAGACCCATGCCACTCTGCAAGATGCT CCCGTGTTCAACTCGCCCAACTATGCCCCATCCAGTGCCGTCTCATCCTATACGCCGCCCACCTCTCCCGGAGAC AGATACCACACAATGTCCCCGCCATGCCACACCTACAACCCCGTGAATGCCCGGCTCGAGGATGACATGCTGCCC TTGTCACCACCTCAACTCGCCCACGCTAGATACGAACAGGCAATGGCTCAGTACGCATCGAATTTCAGCTCGCAG ACATACTCGCAGGAATCCACGTACTCGCAGGAATCTCTCTATAGTGAATCTGCCCTCTCGCCTCGGGAGATGTCT TCCCCTCGGTCGGCGCCCACTCTGGCCGAATCATCCGTCAGCTCGGAGATCGATATCTTCATGACCCAAGATCCC TCCGAGGACTTGCGACAGGAGTTCGGTCATCTCGCTCACTCGGGCATCCCTGGTTTCCCGACTTATCAATTCGTC GATGCAACCGACTTCGCCCCTGTCTCGTCATATTATCCCGAGAAGACCTTCTCTGGTATTGATGACCTGACGGAC CCAATCGACTGCTTGTCCAGCGAGTTCCTAGTGGACCCTTGA |
| Gene | >Pro_DTO377G3_2|g5.t1 ATGAACTCCAACGCGCTGGGAACCGGTCGTCACCGCCGTCAAATCTCCACCCCAGTTGCTCCATACCAACCAGTC ATGACCAATATGCAACCCCATCGGTCACATCGTCGAGGCCAGACTGTGGACTACAACTCCTTCAGTCAACAGCCC AATGTCGACCGACACATGCCGAAGACGGTCTCGCAGTTGCGAGATTATTTTAACGAAAAATCAGGTTTCTCATAT CAACCGAGGGATGTACAGCAGTATCAATCCTATGCCCAGCAGCCCGAGCAGGCTTTCATCCCACATGGCATGCAC ATGCAGCAGCCATATCAATATCAACAACAGTCGCTCGGGTCTGACTGCCAGGCTTTCAACCAAGAACAATTGCAA GCGATCCACACCACCACTGGCAGCCCTGCGCCCTCGTCCATCGGTGCTCCGGCCTTGTCCCGATCAGCCAGTGAG AGCTCCGAAAATACACCATTGAAGCGTGCGCTGCACCGTATGCAACAAGAGCAATTCTCGAACCAACAACAGCAA CAATATGTCGGCAATGCCGATTGGGAATTGTACTCTCGGCGCAACATGCCAATCATCCAAAACGAGCAGGTGACG GCCTATGCCGGACCAATGCACCCAGTCTCTGTTCAACCAAAGGCTCCATCTGCGAAAATTCTTTCGCAAATGTCT ACTGCTTGTATGAATCTTTATGTTGAATTTGACCCGACCGAAACTGATTATATGCCAGACTCCCCCTTGACCCCC GATTCTACCCCATTGAAAAGATCTATTGATTATTCCATGTACAGCAATGTCCCAACACCTTCCAAGTCCCAAAGT TTCTCATTCCCCCATAACCCCGCTACTGCTGAGATGCAGAGAGCGCAGTCTTTTCAAGGAGCCTATGTCAATTCT GTGCAGATTAAGCAGCAAATGCCCTCTCCGGTCAATTCCCCGATTAGCACGTTCGCCGAAATTGCCGATATGCCA TCCCCGAGTTCATATGGAATGACGCCTCAAAATTCCAATATCTCAATCACATCTTCCACTGGCAGAACCAAAAAA CGTGCCCCGTCTACTGTGTCGTCTCCCATCGAGCTAGCCGCTCACGATGATGACCTTGACGCCCGAGTCAAGGCC TCAGTCCAGGAAACCGGCGTTTCGACTGACGAGATTGCCAAGTTCATCTCCGGCCCCGACCCCAAAGATGGAAAG TGGGTCTGTCTATTTACAGGCTGCCTTTGCCGCTTTGGTCGCAAGGAAAACATCAAGTCCCACGTCCAAACACAC CTCGGAGACCGTCAATTCAAATGCGACATTTGCGAAAAGCACTTTGTGCGCGGACACGATCTCAAGCGCCATCTC AAGACACACAGTGGCAATAAGCCCTTCGCCTGTGCCTGTGGCGCCAGCTTTGCTCGACAGGATGCCCTAACTCGG CACCGCCAGCGCGATATGTGTGTTGGAGGCTTCACCGGTGTAGTTCCAAAGACCACCAAGCGCGGTCGCCCCCCG AAGAAGAAGAACAGCCGTCCGGATCTCGATACTCGCCAGGCCAAGTCCACTCGTACTCGTCAACGTGTTGCTGAA AAATCCACCTCAAACGGTTCAGCCCAGACCCATGCCACTCTGCAAGATGCTCCCGTGTTCAACTCGCCCAACTAT GCCCCATCCAGTGCCGTCTCATCCTATACGCCGCCCACCTCTCCCGGAGACAGATACCACACAATGTCCCCGCCA TGCCACACCTACAACCCCGTGAATGCCCGGCTCGAGGATGACATGCTGCCCTTGTCACCACCTCAACTCGCCCAC GCTAGATACGAACAGGCAATGGCTCAGTACGCATCGAATTTCAGCTCGCAGACATACTCGCAGGAATCCACGTAC TCGCAGGAATCTCTCTATAGTGAATCTGCCCTCTCGCCTCGGGAGATGTCTTCCCCTCGGTCGGCGCCCACTCTG GCCGAATCATCCGTCAGCTCGGAGATCGATATCTTCATGACCCAAGATCCCTCCGAGGACTTGCGACAGGAGTTC GGTCATCTCGCTCACTCGGGCATCCCTGGTTTCCCGACTTATCAATTCGTCGATGCAACCGACTTCGCCCCTGTC TCGTCATATTATCCCGAGAAGACCTTCTCTGGTATTGATGACCTGACGGACCCAATCGACTGCTTGTCCAGCGAG TTCCTAGTGGACCCTTGA |