© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4989.t1 |
| Gene name | |
| Location | scaffold_11:256468..258285 |
| Strand | - |
| Gene length (bp) | 1817 |
| Transcript length (bp) | 1605 |
| Coding sequence length (bp) | 1605 |
| Protein length (aa) | 535 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00571 | CBS | CBS domain | 2.2E-06 | 195 | 248 |
| PF00571 | CBS | CBS domain | 9.3E-03 | 273 | 317 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 69 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 104.52 | 64.04 | 145.00 |
| 5d_25C | Five days - 25 degrees Celsius | 135.24 | 82.29 | 188.20 |
| 7d_25C | Seven days - 25 degrees Celsius | 138.39 | 83.54 | 193.24 |
| 10d_25C | Ten days - 25 degrees Celsius | 148.43 | 89.60 | 207.27 |
| 7d_15C | Seven days - 15 degrees Celsius | 142.79 | 85.88 | 199.71 |
| 7d_30C | Seven days - 30 degrees Celsius | 114.79 | 70.05 | 159.53 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.257364 | no |
| 3d_25C | 7d_25C | 0.217400 | no |
| 3d_25C | 7d_15C | 0.155335 | no |
| 3d_25C | 7d_30C | 0.747272 | no |
| 3d_25C | 10d_25C | 0.113395 | no |
| 5d_25C | 7d_25C | 0.948143 | no |
| 5d_25C | 7d_15C | 0.867288 | no |
| 5d_25C | 7d_30C | 0.528301 | no |
| 5d_25C | 10d_25C | 0.754329 | no |
| 7d_25C | 7d_15C | 0.928840 | no |
| 7d_25C | 7d_30C | 0.461881 | no |
| 7d_25C | 10d_25C | 0.823284 | no |
| 7d_15C | 7d_30C | 0.373809 | no |
| 7d_15C | 10d_25C | 0.909884 | no |
| 7d_30C | 10d_25C | 0.285053 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4989.t1 MADHLHSREGSDASLNNASIASPRSSTESRSRNPLRISANHQHRQSLSESLRGPPGSPRARRQPSLPQSAIQSLI DNPPPPKASNPAFVGRDWREISVGELVSPGDLKFVELDTGIEEATNILIDSGGAVLLIRETPESTSAVGTFDYAD LNSYLLLAAGLTHPDEAHQASYDELAKKAHNGVPIPLRDVKKFGMEKEPLIKLPASANVLAAVEIFGGGVHRVVV VNESNDQEVVGIFSQFRLVKFLWENRRSFPIIEELYPRALNELVIGSQEVISINGDKPLSDALHVMNNEGMSSIA VVDNYLNVLGNISTADVKLLTRSSSLPLLHNTCTHFISIILSTRGLIEGKDSFPVFHVNPGSTLAHTVAKIVATR SHRLWVTDPLSPTSSGPPTPSQSSVHLPLSNSISPATGGTANSESSEEAVTSYAQPSQYAAPHLPPPNPPFTYPA VAVSVPSPISHSIPSSALDGARVSGRLAGVVSLTDILNLHARASGLNPADPADSRSRRRRSSSSSQSVRRSGDIG RELFSRGGM* |
| Coding | >Pro_DTO377G3_2|g4989.t1 ATGGCAGACCACTTACATTCTCGCGAAGGATCTGATGCTTCCCTCAACAATGCATCGATTGCTTCTCCGCGATCC AGCACCGAATCTCGCTCTCGAAATCCACTTCGCATTTCAGCAAACCACCAGCATAGACAAAGCTTGAGCGAGTCG CTTCGCGGCCCGCCAGGTTCCCCCCGTGCACGCCGGCAGCCATCACTCCCACAGTCGGCCATCCAGAGCCTTATC GATAATCCACCGCCACCCAAGGCTAGCAACCCTGCCTTTGTTGGTCGTGATTGGAGAGAGATATCAGTTGGGGAG CTGGTCAGCCCGGGCGACCTGAAGTTTGTCGAGCTTGATACAGGCATTGAAGAGGCGACGAACATTTTGATTGAT TCAGGTGGCGCTGTGCTGTTGATTCGCGAGACACCCGAGTCCACTTCTGCCGTGGGCACATTCGACTATGCCGAT CTCAATTCCTATCTCCTTTTAGCAGCGGGCCTGACACATCCGGACGAAGCACATCAAGCGTCATATGACGAGCTA GCCAAGAAAGCCCACAACGGCGTGCCCATTCCATTAAGAGATGTGAAGAAGTTCGGTATGGAGAAGGAGCCGCTG ATCAAGCTGCCAGCGTCGGCCAATGTCTTGGCCGCGGTTGAGATCTTTGGTGGTGGTGTTCACCGGGTTGTGGTT GTCAATGAGTCAAATGACCAAGAAGTGGTCGGGATTTTCAGCCAGTTCCGACTGGTCAAATTCCTCTGGGAAAAT CGCCGCAGTTTCCCGATTATTGAAGAGCTCTACCCGAGGGCTCTGAATGAGCTAGTTATTGGATCTCAGGAAGTG ATCTCCATCAATGGTGATAAACCCCTCTCTGATGCTCTCCATGTGATGAACAATGAGGGTATGTCCTCGATCGCG GTGGTTGATAACTACTTGAACGTGCTTGGGAATATCTCCACGGCGGATGTCAAGCTCTTGACCCGATCATCTTCA TTGCCACTTCTGCATAACACCTGTACCCACTTTATCTCGATTATTCTATCTACACGGGGGTTGATTGAGGGTAAA GACTCATTCCCGGTCTTCCACGTCAATCCTGGATCGACACTCGCTCACACAGTCGCAAAGATCGTGGCAACTCGA TCGCATCGACTCTGGGTGACCGATCCGTTATCTCCCACCTCATCAGGACCGCCAACTCCATCGCAATCTTCCGTA CACCTCCCTCTTTCCAACAGTATCAGCCCAGCTACCGGAGGTACTGCAAATTCAGAATCTTCTGAAGAAGCTGTG ACATCTTATGCACAGCCCTCTCAATATGCCGCCCCTCACCTACCACCTCCTAACCCACCCTTCACGTACCCAGCC GTGGCGGTCTCAGTGCCATCACCCATCTCGCATTCTATTCCCTCGTCCGCCCTAGACGGAGCCCGAGTGTCCGGA CGCCTCGCCGGAGTGGTCAGCTTGACTGACATCCTGAACCTGCATGCCCGAGCCAGCGGGCTGAACCCGGCCGAC CCGGCCGACTCTCGTAGCCGCCGCCGACGCAGTAGTTCGTCGAGCCAGAGTGTCCGCCGCAGCGGTGACATTGGC CGGGAGCTTTTCAGTCGTGGTGGCATGTAA |
| Transcript | >Pro_DTO377G3_2|g4989.t1 ATGGCAGACCACTTACATTCTCGCGAAGGATCTGATGCTTCCCTCAACAATGCATCGATTGCTTCTCCGCGATCC AGCACCGAATCTCGCTCTCGAAATCCACTTCGCATTTCAGCAAACCACCAGCATAGACAAAGCTTGAGCGAGTCG CTTCGCGGCCCGCCAGGTTCCCCCCGTGCACGCCGGCAGCCATCACTCCCACAGTCGGCCATCCAGAGCCTTATC GATAATCCACCGCCACCCAAGGCTAGCAACCCTGCCTTTGTTGGTCGTGATTGGAGAGAGATATCAGTTGGGGAG CTGGTCAGCCCGGGCGACCTGAAGTTTGTCGAGCTTGATACAGGCATTGAAGAGGCGACGAACATTTTGATTGAT TCAGGTGGCGCTGTGCTGTTGATTCGCGAGACACCCGAGTCCACTTCTGCCGTGGGCACATTCGACTATGCCGAT CTCAATTCCTATCTCCTTTTAGCAGCGGGCCTGACACATCCGGACGAAGCACATCAAGCGTCATATGACGAGCTA GCCAAGAAAGCCCACAACGGCGTGCCCATTCCATTAAGAGATGTGAAGAAGTTCGGTATGGAGAAGGAGCCGCTG ATCAAGCTGCCAGCGTCGGCCAATGTCTTGGCCGCGGTTGAGATCTTTGGTGGTGGTGTTCACCGGGTTGTGGTT GTCAATGAGTCAAATGACCAAGAAGTGGTCGGGATTTTCAGCCAGTTCCGACTGGTCAAATTCCTCTGGGAAAAT CGCCGCAGTTTCCCGATTATTGAAGAGCTCTACCCGAGGGCTCTGAATGAGCTAGTTATTGGATCTCAGGAAGTG ATCTCCATCAATGGTGATAAACCCCTCTCTGATGCTCTCCATGTGATGAACAATGAGGGTATGTCCTCGATCGCG GTGGTTGATAACTACTTGAACGTGCTTGGGAATATCTCCACGGCGGATGTCAAGCTCTTGACCCGATCATCTTCA TTGCCACTTCTGCATAACACCTGTACCCACTTTATCTCGATTATTCTATCTACACGGGGGTTGATTGAGGGTAAA GACTCATTCCCGGTCTTCCACGTCAATCCTGGATCGACACTCGCTCACACAGTCGCAAAGATCGTGGCAACTCGA TCGCATCGACTCTGGGTGACCGATCCGTTATCTCCCACCTCATCAGGACCGCCAACTCCATCGCAATCTTCCGTA CACCTCCCTCTTTCCAACAGTATCAGCCCAGCTACCGGAGGTACTGCAAATTCAGAATCTTCTGAAGAAGCTGTG ACATCTTATGCACAGCCCTCTCAATATGCCGCCCCTCACCTACCACCTCCTAACCCACCCTTCACGTACCCAGCC GTGGCGGTCTCAGTGCCATCACCCATCTCGCATTCTATTCCCTCGTCCGCCCTAGACGGAGCCCGAGTGTCCGGA CGCCTCGCCGGAGTGGTCAGCTTGACTGACATCCTGAACCTGCATGCCCGAGCCAGCGGGCTGAACCCGGCCGAC CCGGCCGACTCTCGTAGCCGCCGCCGACGCAGTAGTTCGTCGAGCCAGAGTGTCCGCCGCAGCGGTGACATTGGC CGGGAGCTTTTCAGTCGTGGTGGCATGTAA |
| Gene | >Pro_DTO377G3_2|g4989.t1 ATGGCAGACCACTTACATTCTCGCGAAGGATCTGATGCTTCCCTCAACAATGCATCGATTGCTTCTCCGCGATCC AGCACCGAATCTCGCTCTCGAAATCCACTTCGCATTTCAGCAAACCACCAGCATAGACAAAGCTTGAGCGAGTCG CTTCGCGGCCCGCCAGGTTCCCCCCGTGCACGCCGGCAGCCATCACTCCCACAGTCGGCCATCCAGAGCCTTATC GATAATCCACCGCCACCCAAGGCTAGCAACCCTGCCTTTGTTGGTCGTGATTGGAGAGAGATATCAGTTGGGGAG CTGGTCAGCCCGGGCGACCTGAAGTTTGTCGAGCTTGATACAGGCATTGAAGAGGCGACGAACGTGAGTACATCA CATAGGCAGCATTCCCTGTCCTGACTAACATGCTCGTCCAACTAGATTTTGATTGATTCAGGTGGCGCTGTGCTG TTGATTCGCGAGACACCCGAGTCCACTTCTGCCGTGGGCACATTCGACTATGCCGATCTCAATTCCTATCTCCTT TTAGCAGCGGGCCTGACACATCCGGACGAAGCACATCAAGCGTCATATGACGAGCTAGCCAAGAAAGCCCACAAC GGCGTGCCCATTCCATTAAGAGATGTGAAGAAGTTCGGTATGGAGAAGGAGCCGCTGATCAAGCTGCCAGCGTCG GCCAATGTCTTGGCCGCGGTTGAGATCTTTGGTGGTGGTGTTCACCGGGTTGTGGTTGTCAATGAGTCAAATGAC CAAGAAGTGGTCGGGATTTTCAGCCAGTTCCGACTGGTCAAATTCCTCTGGGAAAATCGCCGCAGTTTCCCGATT ATTGAAGAGCTCTACCCGAGGGCTCTGAATGAGCTAGTTATTGGATCTCAGGAAGTGATCTCCATCAAGTGAGTT GTTTTGGTGATCTTTAGCGCTGTCTAACCGCTAATTCGTAATTCTCAGTGGTGATAAACCCCTCTCTGATGCTCT CCATGTGATGAACAATGAGGGTATGTCCTCGATCGCGGTGGTTGATAACTACTTGAACGTGCTTGGGAATATCTC CACGGCGGATGTCAAGGTATGTGACGAGCCATCTTAACTGGCAAAGTTTACTCACCATTTCGTAGCTCTTGACCC GATCATCTTCATTGCCACTTCTGCATAACACCTGTACCCACTTTATCTCGATTATTCTATCTACACGGGGGTTGA TTGAGGGTAAAGACTCATTCCCGGTCTTCCACGTCAATCCTGGATCGACACTCGCTCACACAGTCGCAAAGATCG TGGCAACTCGATCGCATCGGTAACTACTGCAAACTTGAGATATAAACACAAGATGTACTGACTGCTTTAGACTCT GGGTGACCGATCCGTTATCTCCCACCTCATCAGGACCGCCAACTCCATCGCAATCTTCCGTACACCTCCCTCTTT CCAACAGTATCAGCCCAGCTACCGGAGGTACTGCAAATTCAGAATCTTCTGAAGAAGCTGTGACATCTTATGCAC AGCCCTCTCAATATGCCGCCCCTCACCTACCACCTCCTAACCCACCCTTCACGTACCCAGCCGTGGCGGTCTCAG TGCCATCACCCATCTCGCATTCTATTCCCTCGTCCGCCCTAGACGGAGCCCGAGTGTCCGGACGCCTCGCCGGAG TGGTCAGCTTGACTGACATCCTGAACCTGCATGCCCGAGCCAGCGGGCTGAACCCGGCCGACCCGGCCGACTCTC GTAGCCGCCGCCGACGCAGTAGTTCGTCGAGCCAGAGTGTCCGCCGCAGCGGTGACATTGGCCGGGAGCTTTTCA GTCGTGGTGGCATGTAA |