© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4971.t1 |
| Gene name | |
| Location | scaffold_11:210370..211903 |
| Strand | + |
| Gene length (bp) | 1533 |
| Transcript length (bp) | 1308 |
| Coding sequence length (bp) | 1308 |
| Protein length (aa) | 436 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01569 | PAP2 | PAP2 superfamily | 1.6E-29 | 126 | 273 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 20 | 42 | 22 |
| 2 | 68 | 90 | 22 |
| 3 | 119 | 141 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 69.42 | 41.41 | 97.43 |
| 5d_25C | Five days - 25 degrees Celsius | 44.39 | 24.09 | 64.68 |
| 7d_25C | Seven days - 25 degrees Celsius | 46.12 | 25.07 | 67.18 |
| 10d_25C | Ten days - 25 degrees Celsius | 36.94 | 18.97 | 54.90 |
| 7d_15C | Seven days - 15 degrees Celsius | 48.67 | 22.51 | 74.84 |
| 7d_30C | Seven days - 30 degrees Celsius | 113.91 | 61.73 | 166.10 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.064497 | no |
| 3d_25C | 7d_25C | 0.087279 | no |
| 3d_25C | 7d_15C | 0.183143 | no |
| 3d_25C | 7d_30C | 0.028642 | yes |
| 3d_25C | 10d_25C | 0.008469 | yes |
| 5d_25C | 7d_25C | 0.922252 | no |
| 5d_25C | 7d_15C | 0.807845 | no |
| 5d_25C | 7d_30C | 0.000700 | yes |
| 5d_25C | 10d_25C | 0.560826 | no |
| 7d_25C | 7d_15C | 0.897290 | no |
| 7d_25C | 7d_30C | 0.000700 | yes |
| 7d_25C | 10d_25C | 0.460358 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.378507 | no |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4971.t1 MEIPAKLPFSKRRLRPRVVISYIFDYVIIIACVAGFAILNTIEPFHQHFSLTNISIQYPYAVHERIPMPYALCIS GAFPLVLIILYTLFIDGLFSHHKPHDAASGKRKLRGPHRWKDRLWELNCGILGLLLAQGLAFVITQALKNACGKP RPDLIDRCQPRAGSKDLFPGLSNSTICTGDPALLTDGFRSWPSGHSSSSFAGLVYISLWLGGKLHVMDNRGEAWK SLVIMAPLLAATLVAVSRIMDARHHPFDVITGSMLGIVCGFVAYRQYFPPLTEPWRKGRAYPIRTWGTEPSGPET VRLKGFRQDSSTALRNPEEERMDPPDIPRSEHARPDTSTYIHASNPYPSNVYNRRPHDLDLDGGAWSSSEDDLSS GYEMRHGHTMGQNPGPDHNAHQYDPSNAYVSQTQPLTANAGIHVPDAMAGPGRPLTNIPM* |
| Coding | >Pro_DTO377G3_2|g4971.t1 ATGGAAATCCCCGCAAAACTCCCCTTCTCCAAGCGGCGGCTGCGACCGCGTGTTGTTATCTCCTACATCTTTGAC TATGTGATCATTATTGCCTGCGTTGCCGGCTTCGCCATTCTCAACACGATCGAGCCCTTCCACCAACACTTCTCC CTCACCAACATCTCCATCCAATATCCTTACGCCGTACATGAACGTATTCCCATGCCTTACGCCCTCTGCATCTCC GGTGCTTTCCCACTCGTTCTCATCATCCTCTACACCTTGTTTATCGATGGCTTGTTTTCGCACCATAAGCCACAT GACGCGGCGTCTGGGAAGCGGAAGCTAAGAGGTCCGCATCGCTGGAAGGACAGACTTTGGGAGCTCAATTGTGGT ATTTTGGGTCTGTTGCTGGCTCAGGGACTCGCGTTCGTCATTACACAGGCGCTGAAGAACGCATGCGGCAAACCG AGACCTGATCTTATTGATCGTTGTCAACCACGCGCTGGTAGCAAAGACCTTTTCCCAGGATTGTCAAACTCAACG ATTTGTACCGGTGATCCCGCGTTGTTAACAGACGGGTTTCGGTCGTGGCCATCTGGTCACAGTAGTTCCTCCTTC GCCGGTCTCGTCTACATATCGCTCTGGCTAGGTGGGAAGTTGCACGTTATGGACAATCGCGGTGAGGCCTGGAAA TCCCTTGTCATCATGGCTCCTCTACTAGCTGCAACCCTCGTGGCCGTATCGCGTATCATGGACGCGCGTCACCAC CCCTTCGATGTGATTACGGGGTCGATGCTTGGAATCGTCTGCGGCTTTGTCGCATATCGCCAGTATTTCCCACCG CTCACCGAACCCTGGCGCAAGGGCCGCGCCTACCCAATCCGAACCTGGGGGACCGAACCTTCAGGACCGGAGACA GTTCGACTCAAGGGCTTCAGGCAAGATAGCTCGACTGCTCTCCGCAACCCCGAAGAAGAGCGCATGGACCCGCCA GATATCCCCAGATCGGAACATGCCCGACCCGACACCTCTACCTATATTCATGCCTCCAACCCGTATCCATCGAAT GTTTACAATCGCCGACCACACGACCTTGATCTTGACGGCGGTGCTTGGTCGTCGAGTGAGGACGACCTTAGCAGC GGGTATGAAATGCGACATGGTCATACGATGGGGCAGAATCCCGGCCCCGACCACAATGCGCATCAATATGACCCC AGTAATGCATATGTGTCGCAGACACAGCCGCTGACGGCCAATGCGGGAATCCATGTCCCTGACGCGATGGCGGGT CCGGGGCGTCCGTTGACGAACATCCCCATGTAA |
| Transcript | >Pro_DTO377G3_2|g4971.t1 ATGGAAATCCCCGCAAAACTCCCCTTCTCCAAGCGGCGGCTGCGACCGCGTGTTGTTATCTCCTACATCTTTGAC TATGTGATCATTATTGCCTGCGTTGCCGGCTTCGCCATTCTCAACACGATCGAGCCCTTCCACCAACACTTCTCC CTCACCAACATCTCCATCCAATATCCTTACGCCGTACATGAACGTATTCCCATGCCTTACGCCCTCTGCATCTCC GGTGCTTTCCCACTCGTTCTCATCATCCTCTACACCTTGTTTATCGATGGCTTGTTTTCGCACCATAAGCCACAT GACGCGGCGTCTGGGAAGCGGAAGCTAAGAGGTCCGCATCGCTGGAAGGACAGACTTTGGGAGCTCAATTGTGGT ATTTTGGGTCTGTTGCTGGCTCAGGGACTCGCGTTCGTCATTACACAGGCGCTGAAGAACGCATGCGGCAAACCG AGACCTGATCTTATTGATCGTTGTCAACCACGCGCTGGTAGCAAAGACCTTTTCCCAGGATTGTCAAACTCAACG ATTTGTACCGGTGATCCCGCGTTGTTAACAGACGGGTTTCGGTCGTGGCCATCTGGTCACAGTAGTTCCTCCTTC GCCGGTCTCGTCTACATATCGCTCTGGCTAGGTGGGAAGTTGCACGTTATGGACAATCGCGGTGAGGCCTGGAAA TCCCTTGTCATCATGGCTCCTCTACTAGCTGCAACCCTCGTGGCCGTATCGCGTATCATGGACGCGCGTCACCAC CCCTTCGATGTGATTACGGGGTCGATGCTTGGAATCGTCTGCGGCTTTGTCGCATATCGCCAGTATTTCCCACCG CTCACCGAACCCTGGCGCAAGGGCCGCGCCTACCCAATCCGAACCTGGGGGACCGAACCTTCAGGACCGGAGACA GTTCGACTCAAGGGCTTCAGGCAAGATAGCTCGACTGCTCTCCGCAACCCCGAAGAAGAGCGCATGGACCCGCCA GATATCCCCAGATCGGAACATGCCCGACCCGACACCTCTACCTATATTCATGCCTCCAACCCGTATCCATCGAAT GTTTACAATCGCCGACCACACGACCTTGATCTTGACGGCGGTGCTTGGTCGTCGAGTGAGGACGACCTTAGCAGC GGGTATGAAATGCGACATGGTCATACGATGGGGCAGAATCCCGGCCCCGACCACAATGCGCATCAATATGACCCC AGTAATGCATATGTGTCGCAGACACAGCCGCTGACGGCCAATGCGGGAATCCATGTCCCTGACGCGATGGCGGGT CCGGGGCGTCCGTTGACGAACATCCCCATGTAA |
| Gene | >Pro_DTO377G3_2|g4971.t1 ATGGAAATCCCCGCAAAACTCCCCTTCTCCAAGCGGCGGCTGCGACCGCGTGTTGTTATCTCGTGTGTCGACTTT CCCCAGGTCTCCCCGCAAATCCAACTAACAATTCCACAGCTACATCTTTGACTATGTGATCATTATGTACGTGCA TCAATTCCTCTCTTTACTCCGTACTAACCATGGAAATAGTGCCTGCGTTGCCGGCTTCGCCATTCTCAACACGAT CGAGCCCTTCCACCAACACTTCTCCCTCACCAACATCTCCATCCAATATCCTTACGCCGTACATGAACGTATTCC CATGCCTTACGCCCTCTGCATCTCCGGTGCTTTCCCACTCGTTCTCATCATCCTCTACACCTTGTTTATCGATGG CTTGTTTTCGCACCATAAGCCACATGACGCGGCGTCTGGGAAGCGGAAGCTAAGAGGTCCGCATCGCTGGAAGGA CAGACTTTGGGAGCTCAATTGTGGTATTTTGGGTCTGTTGCTGGCTCAGGGACTCGCGTTCGTCATTACACAGGC GCTGAAGAACGCATGCGGCAAACCGAGACCTGATCTTATTGATCGTTGTCAACCACGCGCTGGTAGCAAAGACCT TTTCCCAGGATTGTCAAACTCAACGATTTGTACCGGTGATCCCGCGTTGTTAACAGACGGGTTTCGGTCGTGGCC ATCTGGTATGCGATATGACCCAGTACTGCTTTTCAGAGTCGCACGTGCTAACCTTAAAAATTCATCCAGGTCACA GTAGTTGTGTGTATACCTTTTGCGATTCTCCTAGTCTTTCATATTACTAACACAGTCCGATCAATAGCCTCCTTC GCCGGTCTCGTCTACATATCGCTCTGGCTAGGTGGGAAGTTGCACGTTATGGACAATCGCGGTGAGGCCTGGAAA TCCCTTGTCATCATGGCTCCTCTACTAGCTGCAACCCTCGTGGCCGTATCGCGTATCATGGACGCGCGTCACCAC CCCTTCGATGTGATTACGGGGTCGATGCTTGGAATCGTCTGCGGCTTTGTCGCATATCGCCAGTATTTCCCACCG CTCACCGAACCCTGGCGCAAGGGCCGCGCCTACCCAATCCGAACCTGGGGGACCGAACCTTCAGGACCGGAGACA GTTCGACTCAAGGGCTTCAGGCAAGATAGCTCGACTGCTCTCCGCAACCCCGAAGAAGAGCGCATGGACCCGCCA GATATCCCCAGATCGGAACATGCCCGACCCGACACCTCTACCTATATTCATGCCTCCAACCCGTATCCATCGAAT GTTTACAATCGCCGACCACACGACCTTGATCTTGACGGCGGTGCTTGGTCGTCGAGTGAGGACGACCTTAGCAGC GGGTATGAAATGCGACATGGTCATACGATGGGGCAGAATCCCGGCCCCGACCACAATGCGCATCAATATGACCCC AGTAATGCATATGTGTCGCAGACACAGCCGCTGACGGCCAATGCGGGAATCCATGTCCCTGACGCGATGGCGGGT CCGGGGCGTCCGTTGACGAACATCCCCATGTAA |