© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g4947.t1 |
| Gene name | |
| Location | scaffold_11:143795..145735 |
| Strand | + |
| Gene length (bp) | 1940 |
| Transcript length (bp) | 1890 |
| Coding sequence length (bp) | 1890 |
| Protein length (aa) | 630 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00854 | PTR2 | POT family | 1.2E-73 | 169 | 568 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 174 | 196 | 22 |
| 2 | 200 | 219 | 19 |
| 3 | 258 | 280 | 22 |
| 4 | 284 | 306 | 22 |
| 5 | 380 | 399 | 19 |
| 6 | 430 | 447 | 17 |
| 7 | 460 | 482 | 22 |
| 8 | 505 | 527 | 22 |
| 9 | 572 | 594 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 7.57 | 3.16 | 11.99 |
| 5d_25C | Five days - 25 degrees Celsius | 8.66 | 3.78 | 13.53 |
| 7d_25C | Seven days - 25 degrees Celsius | 6.94 | 2.74 | 11.13 |
| 10d_25C | Ten days - 25 degrees Celsius | 6.79 | 2.71 | 10.87 |
| 7d_15C | Seven days - 15 degrees Celsius | 11.59 | 5.49 | 17.69 |
| 7d_30C | Seven days - 30 degrees Celsius | 24.90 | 13.59 | 36.20 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.754660 | no |
| 3d_25C | 7d_25C | 0.854753 | no |
| 3d_25C | 7d_15C | 0.178272 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.814758 | no |
| 5d_25C | 7d_25C | 0.576155 | no |
| 5d_25C | 7d_15C | 0.377315 | no |
| 5d_25C | 7d_30C | 0.000700 | yes |
| 5d_25C | 10d_25C | 0.530161 | no |
| 7d_25C | 7d_15C | 0.100458 | no |
| 7d_25C | 7d_30C | 0.000700 | yes |
| 7d_25C | 10d_25C | 0.969167 | no |
| 7d_15C | 7d_30C | 0.002297 | yes |
| 7d_15C | 10d_25C | 0.087424 | no |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Orthofinder run ID | 2 |
| Orthogroup | 5300 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4947.t1 MAAQATGRDSSSLVIRDVEPANTTLQSNPVCNEVADKSIIPESYNLDVGDEDPTRDELHGPNALRRVSAPIPWAV YTIAFVELCERFSYHGTHVLYSNFVNHALPLPAPNGPPGSNHATGAGGPSSQDFSGALGKGVETANAINTFNTLW CYCLPLVGAWIADEYWGRYKTISWSIVAAILGHIILVISAIPPVIMNTDASFAVFILGVIIMGLGTGGFKPNISA LVVEQIPAVNLKVRTLKSGERVVVDPTITQSRIYHYFYLLINIGALVGQIGMVYAEKYIGFWLAFLLPTLMFLTT PPIMWWGRKRYRQSPPAGSVTYKAIMTILFCMRDRWHFNPYIMWKRTHDGTFWDTAKPSNIEPQSRPRWMTFDDA WVDEVHRGFAACAVFCYFPFYWLAYNQLTNNLNAQASTMTVKGVPNDIVNNLDPLALIIFVPICDKLLYPVLRKM GLQFTAIKKIALGFWLASLSMIWAAIVQSYIYLTSPCGFGANTCPNDDGSVHPCHILVWAQTGSYVLVAVSEIFA VITSMEYAYSKAPRNMRSLVQAMNMFTNAVSAAIAETLIPLSRAPLLAWNYGIFAILTFVGGAVFIVQFWGLDKE EDELNNLPEGHVQASESPGDHVGVGPSRG* |
| Coding | >Pro_DTO377G3_2|g4947.t1 ATGGCAGCTCAGGCCACAGGCCGGGACTCGAGCTCGCTCGTTATCCGTGATGTTGAGCCTGCCAATACCACCCTG CAAAGTAACCCAGTTTGCAATGAGGTCGCTGATAAGAGTATCATCCCCGAGTCGTACAACCTTGACGTGGGTGAC GAGGATCCAACCAGAGATGAACTTCATGGCCCCAATGCCTTGCGTCGCGTCTCAGCTCCGATTCCCTGGGCTGTC TACACCATCGCATTTGTTGAGCTGTGCGAGCGTTTTTCCTACCACGGAACCCATGTTCTCTACTCTAACTTCGTG AACCATGCTCTCCCCCTTCCTGCCCCGAATGGCCCTCCCGGATCAAACCACGCAACCGGGGCTGGTGGCCCTAGC TCTCAGGATTTCTCCGGTGCTTTGGGTAAGGGTGTTGAGACTGCCAACGCTATCAACACCTTCAACACCCTCTGG TGCTACTGCCTTCCTCTAGTGGGTGCCTGGATCGCCGACGAGTACTGGGGACGATACAAGACCATCTCCTGGTCT ATTGTGGCTGCCATTTTAGGTCACATCATTTTGGTGATCTCTGCCATTCCACCGGTGATTATGAATACTGATGCC TCCTTCGCTGTGTTCATTCTAGGTGTAATAATCATGGGCTTAGGTACTGGTGGCTTCAAGCCCAACATATCCGCT CTGGTTGTCGAGCAGATACCTGCCGTCAATCTCAAGGTGCGTACACTGAAGTCTGGTGAGCGTGTTGTCGTCGAC CCGACTATCACTCAGAGCCGTATCTATCACTACTTCTACCTGCTTATCAACATAGGCGCACTGGTCGGTCAGATC GGCATGGTCTATGCGGAGAAGTATATCGGCTTCTGGTTGGCCTTTCTGCTTCCCACGCTCATGTTCCTGACTACT CCACCCATCATGTGGTGGGGTCGCAAGCGCTATCGCCAGTCTCCCCCGGCGGGCTCGGTAACTTACAAGGCCATC ATGACAATCTTATTTTGTATGCGCGACCGCTGGCACTTTAATCCATACATCATGTGGAAACGAACACACGATGGC ACTTTCTGGGACACCGCGAAGCCCTCCAACATCGAACCCCAATCCCGACCCAGGTGGATGACCTTTGACGATGCA TGGGTGGATGAAGTGCACCGTGGATTTGCAGCTTGCGCAGTTTTTTGCTATTTCCCATTCTACTGGCTAGCCTAC AACCAACTGACGAACAATCTCAACGCACAGGCTAGCACGATGACCGTGAAAGGCGTCCCGAACGATATTGTGAAC AACCTTGACCCCTTGGCGCTGATTATCTTCGTCCCGATCTGCGACAAGCTCCTTTACCCCGTCTTGCGCAAAATG GGCCTTCAATTCACGGCCATTAAGAAGATTGCCCTCGGTTTCTGGTTGGCGTCGCTCTCCATGATATGGGCTGCT ATCGTTCAGTCCTACATCTACCTGACTTCGCCCTGTGGCTTCGGAGCTAACACCTGCCCCAACGACGATGGCAGC GTCCACCCATGTCATATCCTTGTTTGGGCTCAGACTGGATCCTACGTCCTGGTTGCTGTATCGGAGATCTTTGCC GTCATCACCTCAATGGAGTATGCCTACTCCAAGGCACCTCGCAATATGCGTTCCCTCGTCCAAGCTATGAATATG TTCACTAACGCTGTCTCCGCAGCCATAGCTGAGACTTTGATACCGCTTTCCAGGGCCCCTTTGTTGGCCTGGAAC TACGGCATCTTCGCCATCTTGACCTTTGTCGGTGGCGCCGTCTTCATCGTCCAGTTCTGGGGCCTGGATAAAGAG GAGGACGAGTTGAACAACTTGCCCGAGGGTCATGTGCAGGCTAGTGAGAGCCCGGGAGACCATGTTGGGGTTGGC CCTAGTCGTGGGTGA |
| Transcript | >Pro_DTO377G3_2|g4947.t1 ATGGCAGCTCAGGCCACAGGCCGGGACTCGAGCTCGCTCGTTATCCGTGATGTTGAGCCTGCCAATACCACCCTG CAAAGTAACCCAGTTTGCAATGAGGTCGCTGATAAGAGTATCATCCCCGAGTCGTACAACCTTGACGTGGGTGAC GAGGATCCAACCAGAGATGAACTTCATGGCCCCAATGCCTTGCGTCGCGTCTCAGCTCCGATTCCCTGGGCTGTC TACACCATCGCATTTGTTGAGCTGTGCGAGCGTTTTTCCTACCACGGAACCCATGTTCTCTACTCTAACTTCGTG AACCATGCTCTCCCCCTTCCTGCCCCGAATGGCCCTCCCGGATCAAACCACGCAACCGGGGCTGGTGGCCCTAGC TCTCAGGATTTCTCCGGTGCTTTGGGTAAGGGTGTTGAGACTGCCAACGCTATCAACACCTTCAACACCCTCTGG TGCTACTGCCTTCCTCTAGTGGGTGCCTGGATCGCCGACGAGTACTGGGGACGATACAAGACCATCTCCTGGTCT ATTGTGGCTGCCATTTTAGGTCACATCATTTTGGTGATCTCTGCCATTCCACCGGTGATTATGAATACTGATGCC TCCTTCGCTGTGTTCATTCTAGGTGTAATAATCATGGGCTTAGGTACTGGTGGCTTCAAGCCCAACATATCCGCT CTGGTTGTCGAGCAGATACCTGCCGTCAATCTCAAGGTGCGTACACTGAAGTCTGGTGAGCGTGTTGTCGTCGAC CCGACTATCACTCAGAGCCGTATCTATCACTACTTCTACCTGCTTATCAACATAGGCGCACTGGTCGGTCAGATC GGCATGGTCTATGCGGAGAAGTATATCGGCTTCTGGTTGGCCTTTCTGCTTCCCACGCTCATGTTCCTGACTACT CCACCCATCATGTGGTGGGGTCGCAAGCGCTATCGCCAGTCTCCCCCGGCGGGCTCGGTAACTTACAAGGCCATC ATGACAATCTTATTTTGTATGCGCGACCGCTGGCACTTTAATCCATACATCATGTGGAAACGAACACACGATGGC ACTTTCTGGGACACCGCGAAGCCCTCCAACATCGAACCCCAATCCCGACCCAGGTGGATGACCTTTGACGATGCA TGGGTGGATGAAGTGCACCGTGGATTTGCAGCTTGCGCAGTTTTTTGCTATTTCCCATTCTACTGGCTAGCCTAC AACCAACTGACGAACAATCTCAACGCACAGGCTAGCACGATGACCGTGAAAGGCGTCCCGAACGATATTGTGAAC AACCTTGACCCCTTGGCGCTGATTATCTTCGTCCCGATCTGCGACAAGCTCCTTTACCCCGTCTTGCGCAAAATG GGCCTTCAATTCACGGCCATTAAGAAGATTGCCCTCGGTTTCTGGTTGGCGTCGCTCTCCATGATATGGGCTGCT ATCGTTCAGTCCTACATCTACCTGACTTCGCCCTGTGGCTTCGGAGCTAACACCTGCCCCAACGACGATGGCAGC GTCCACCCATGTCATATCCTTGTTTGGGCTCAGACTGGATCCTACGTCCTGGTTGCTGTATCGGAGATCTTTGCC GTCATCACCTCAATGGAGTATGCCTACTCCAAGGCACCTCGCAATATGCGTTCCCTCGTCCAAGCTATGAATATG TTCACTAACGCTGTCTCCGCAGCCATAGCTGAGACTTTGATACCGCTTTCCAGGGCCCCTTTGTTGGCCTGGAAC TACGGCATCTTCGCCATCTTGACCTTTGTCGGTGGCGCCGTCTTCATCGTCCAGTTCTGGGGCCTGGATAAAGAG GAGGACGAGTTGAACAACTTGCCCGAGGGTCATGTGCAGGCTAGTGAGAGCCCGGGAGACCATGTTGGGGTTGGC CCTAGTCGTGGGTGA |
| Gene | >Pro_DTO377G3_2|g4947.t1 ATGGCAGCTCAGGCCACAGGCCGGGACTCGAGCTCGCTCGTTATCCGTGATGTTGAGCCTGCCAATACCACCCTG CAAAGTAACCCAGTTTGCAATGAGGTCGCTGATAAGAGTATCATCCCCGAGTCGTACAACCTTGACGTGGGTGAC GAGGATCCAACCAGAGATGAACTTCATGGCCCCAATGCCTTGCGTCGCGTCTCAGCTCCGATTCCCTGGGCTGTC TACACCATCGCATTTGTTGAGCTGTGCGAGCGTTTTTCCTACCACGGAACCCATGTTCTCTGTAAGATAGCCACA TCCCTATAAATATACTCTTCTAACATTGAAACACAGACTCTAACTTCGTGAACCATGCTCTCCCCCTTCCTGCCC CGAATGGCCCTCCCGGATCAAACCACGCAACCGGGGCTGGTGGCCCTAGCTCTCAGGATTTCTCCGGTGCTTTGG GTAAGGGTGTTGAGACTGCCAACGCTATCAACACCTTCAACACCCTCTGGTGCTACTGCCTTCCTCTAGTGGGTG CCTGGATCGCCGACGAGTACTGGGGACGATACAAGACCATCTCCTGGTCTATTGTGGCTGCCATTTTAGGTCACA TCATTTTGGTGATCTCTGCCATTCCACCGGTGATTATGAATACTGATGCCTCCTTCGCTGTGTTCATTCTAGGTG TAATAATCATGGGCTTAGGTACTGGTGGCTTCAAGCCCAACATATCCGCTCTGGTTGTCGAGCAGATACCTGCCG TCAATCTCAAGGTGCGTACACTGAAGTCTGGTGAGCGTGTTGTCGTCGACCCGACTATCACTCAGAGCCGTATCT ATCACTACTTCTACCTGCTTATCAACATAGGCGCACTGGTCGGTCAGATCGGCATGGTCTATGCGGAGAAGTATA TCGGCTTCTGGTTGGCCTTTCTGCTTCCCACGCTCATGTTCCTGACTACTCCACCCATCATGTGGTGGGGTCGCA AGCGCTATCGCCAGTCTCCCCCGGCGGGCTCGGTAACTTACAAGGCCATCATGACAATCTTATTTTGTATGCGCG ACCGCTGGCACTTTAATCCATACATCATGTGGAAACGAACACACGATGGCACTTTCTGGGACACCGCGAAGCCCT CCAACATCGAACCCCAATCCCGACCCAGGTGGATGACCTTTGACGATGCATGGGTGGATGAAGTGCACCGTGGAT TTGCAGCTTGCGCAGTTTTTTGCTATTTCCCATTCTACTGGCTAGCCTACAACCAACTGACGAACAATCTCAACG CACAGGCTAGCACGATGACCGTGAAAGGCGTCCCGAACGATATTGTGAACAACCTTGACCCCTTGGCGCTGATTA TCTTCGTCCCGATCTGCGACAAGCTCCTTTACCCCGTCTTGCGCAAAATGGGCCTTCAATTCACGGCCATTAAGA AGATTGCCCTCGGTTTCTGGTTGGCGTCGCTCTCCATGATATGGGCTGCTATCGTTCAGTCCTACATCTACCTGA CTTCGCCCTGTGGCTTCGGAGCTAACACCTGCCCCAACGACGATGGCAGCGTCCACCCATGTCATATCCTTGTTT GGGCTCAGACTGGATCCTACGTCCTGGTTGCTGTATCGGAGATCTTTGCCGTCATCACCTCAATGGAGTATGCCT ACTCCAAGGCACCTCGCAATATGCGTTCCCTCGTCCAAGCTATGAATATGTTCACTAACGCTGTCTCCGCAGCCA TAGCTGAGACTTTGATACCGCTTTCCAGGGCCCCTTTGTTGGCCTGGAACTACGGCATCTTCGCCATCTTGACCT TTGTCGGTGGCGCCGTCTTCATCGTCCAGTTCTGGGGCCTGGATAAAGAGGAGGACGAGTTGAACAACTTGCCCG AGGGTCATGTGCAGGCTAGTGAGAGCCCGGGAGACCATGTTGGGGTTGGCCCTAGTCGTGGGTGA |