Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g4946.t1
Gene name
Locationscaffold_11:141010..142046
Strand+
Gene length (bp)1036
Transcript length (bp)861
Coding sequence length (bp)861
Protein length (aa) 287

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF13561 adh_short_C2 Enoyl-(Acyl carrier protein) reductase 2.6E-56 42 282
PF00106 adh_short short chain dehydrogenase 2.7E-46 36 231
PF08659 KR KR domain 5.9E-14 38 186
PF01370 Epimerase NAD dependent epimerase/dehydratase family 9.0E-06 38 212

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 18 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 57.37 31.49 83.25
5d_25C Five days - 25 degrees Celsius 64.71 36.66 92.75
7d_25C Seven days - 25 degrees Celsius 97.58 58.45 136.71
10d_25C Ten days - 25 degrees Celsius 158.57 97.14 220.00
7d_15C Seven days - 15 degrees Celsius 115.56 60.19 170.92
7d_30C Seven days - 30 degrees Celsius 303.94 176.37 431.52

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.702973 no
3d_25C 7d_25C 0.019353 yes
3d_25C 7d_15C 0.002297 yes
3d_25C 7d_30C 0.000700 yes
3d_25C 10d_25C 0.000700 yes
5d_25C 7d_25C 0.070025 no
5d_25C 7d_15C 0.014971 yes
5d_25C 7d_30C 0.000700 yes
5d_25C 10d_25C 0.000700 yes
7d_25C 7d_15C 0.561791 no
7d_25C 7d_30C 0.000700 yes
7d_25C 10d_25C 0.018838 yes
7d_15C 7d_30C 0.000700 yes
7d_15C 10d_25C 0.217514 no
7d_30C 10d_25C 0.001278 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g4946.t1
MSVSIETTTVPTAPITAQPVLLGQKSRMPEFSLAGKVVLVSGAARGLGLTQTEALLEAGAKVYALDRLEEPAPEF
EQIQQRAMELGTELHYRRIDVRDTELLNSVIETIANEEGRMDGLIAAAGIQQETPALEYSAKDSNTMFEVNVTGV
FMTAQAVAKQMIRFGNGGSIAMIASMSGTIANRGLICPAYNASKAAVLQLARNLASEWGTYNIRVNTISPGYIVT
AMVEKLFLEFPERRDQWPKENMLARLSRPEEYRGAAVFLISDASSFMTGSDLRMDGGHAAW*
Coding >Pro_DTO377G3_2|g4946.t1
ATGTCTGTCTCCATCGAAACCACTACAGTTCCCACTGCACCCATTACCGCCCAGCCCGTCCTGCTGGGCCAGAAG
TCCAGAATGCCCGAGTTCAGTCTCGCTGGGAAGGTGGTGTTGGTCTCAGGTGCTGCCCGTGGTCTAGGATTGACC
CAGACAGAGGCACTCCTGGAGGCCGGAGCGAAGGTATACGCACTCGACCGTCTGGAAGAGCCGGCCCCCGAGTTT
GAGCAGATCCAACAGCGCGCAATGGAGCTTGGCACCGAGTTGCACTACCGTCGTATCGACGTGCGTGACACAGAA
CTTCTCAACAGTGTCATCGAGACCATCGCCAATGAAGAGGGCCGCATGGATGGTCTCATTGCAGCAGCGGGCATT
CAGCAGGAGACCCCAGCGCTCGAATACTCAGCCAAGGACAGCAACACCATGTTCGAGGTCAATGTCACGGGGGTG
TTCATGACCGCCCAGGCTGTGGCTAAGCAAATGATTCGCTTTGGAAACGGAGGTAGTATCGCTATGATCGCCTCT
ATGAGCGGCACTATTGCCAATCGCGGTCTTATTTGCCCCGCATATAACGCTAGCAAGGCTGCTGTCCTTCAACTC
GCCCGCAACCTCGCTTCTGAATGGGGCACCTACAACATCCGCGTGAATACCATCTCCCCTGGCTACATTGTCACC
GCCATGGTTGAGAAGCTCTTTCTCGAGTTTCCCGAACGTCGCGACCAGTGGCCCAAGGAGAACATGCTTGCCCGT
CTTTCCCGACCGGAAGAGTACCGTGGTGCCGCTGTCTTCTTGATTAGCGATGCTAGCAGCTTCATGACTGGAAGT
GACCTGCGAATGGATGGTGGCCACGCCGCATGGTAG
Transcript >Pro_DTO377G3_2|g4946.t1
ATGTCTGTCTCCATCGAAACCACTACAGTTCCCACTGCACCCATTACCGCCCAGCCCGTCCTGCTGGGCCAGAAG
TCCAGAATGCCCGAGTTCAGTCTCGCTGGGAAGGTGGTGTTGGTCTCAGGTGCTGCCCGTGGTCTAGGATTGACC
CAGACAGAGGCACTCCTGGAGGCCGGAGCGAAGGTATACGCACTCGACCGTCTGGAAGAGCCGGCCCCCGAGTTT
GAGCAGATCCAACAGCGCGCAATGGAGCTTGGCACCGAGTTGCACTACCGTCGTATCGACGTGCGTGACACAGAA
CTTCTCAACAGTGTCATCGAGACCATCGCCAATGAAGAGGGCCGCATGGATGGTCTCATTGCAGCAGCGGGCATT
CAGCAGGAGACCCCAGCGCTCGAATACTCAGCCAAGGACAGCAACACCATGTTCGAGGTCAATGTCACGGGGGTG
TTCATGACCGCCCAGGCTGTGGCTAAGCAAATGATTCGCTTTGGAAACGGAGGTAGTATCGCTATGATCGCCTCT
ATGAGCGGCACTATTGCCAATCGCGGTCTTATTTGCCCCGCATATAACGCTAGCAAGGCTGCTGTCCTTCAACTC
GCCCGCAACCTCGCTTCTGAATGGGGCACCTACAACATCCGCGTGAATACCATCTCCCCTGGCTACATTGTCACC
GCCATGGTTGAGAAGCTCTTTCTCGAGTTTCCCGAACGTCGCGACCAGTGGCCCAAGGAGAACATGCTTGCCCGT
CTTTCCCGACCGGAAGAGTACCGTGGTGCCGCTGTCTTCTTGATTAGCGATGCTAGCAGCTTCATGACTGGAAGT
GACCTGCGAATGGATGGTGGCCACGCCGCATGGTAG
Gene >Pro_DTO377G3_2|g4946.t1
ATGTCTGTCTCCATCGAAACCACTACAGTTCCCACTGCACCCATTACCGCCCAGCCCGTCCTGCTGGGCCAGAAG
TCCAGAATGCCCGAGTTCAGTCTCGCTGGGAAGGTGGTGTTGGTCTCAGGTGCTGCCCGTGGTCTAGGATTGACC
CAGACAGAGGCACTCCTGGAGGCCGGAGCGAAGGTATACGCACTCGACCGTCTGGAAGAGCCGGTAAGTATCTAC
ATCCCTCGCTTCTATGGCAGCACTAAACTAACAACCACTCAATCACCAGGCCCCCGAGTTTGAGCAGATCCAACA
GCGCGCAATGGAGCTTGGCACCGAGTTGCACTACCGTCGTATCGACGTGCGTGACACAGAACTTCTCAACAGTGT
CATCGAGACCATCGCCAATGAAGAGGGCCGCATGGATGGTCTCATTGCAGCAGCGGGCATTCAGCAGGAGACCCC
AGCGCTCGAATACTCAGCCAAGGACAGCAACACCATGTTCGAGGTCAATGTCACGGGGGTGTTCATGACCGCCCA
GGCTGTGGCTAAGCAAATGATTCGCTTTGGAAACGGAGGTAGTATCGCTATGATCGCCTCTATGAGCGGCACTAT
TGCCAATCGCGTACGTTCCCACTCCCCTCTCAGACTTTCTTTCTCTCTATGGAACATTTCCCCGCTTCATGTCAC
ATTCCGCTCTTCTGGCTGGCCTCGATGATCTAACATATTCTCCCTACAGGGTCTTATTTGCCCCGCATATAACGC
TAGCAAGGCTGCTGTCCTTCAACTCGCCCGCAACCTCGCTTCTGAATGGGGCACCTACAACATCCGCGTGAATAC
CATCTCCCCTGGCTACATTGTCACCGCCATGGTTGAGAAGCTCTTTCTCGAGTTTCCCGAACGTCGCGACCAGTG
GCCCAAGGAGAACATGCTTGCCCGTCTTTCCCGACCGGAAGAGTACCGTGGTGCCGCTGTCTTCTTGATTAGCGA
TGCTAGCAGCTTCATGACTGGAAGTGACCTGCGAATGGATGGTGGCCACGCCGCATGGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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