© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4946.t1 |
| Gene name | |
| Location | scaffold_11:141010..142046 |
| Strand | + |
| Gene length (bp) | 1036 |
| Transcript length (bp) | 861 |
| Coding sequence length (bp) | 861 |
| Protein length (aa) | 287 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13561 | adh_short_C2 | Enoyl-(Acyl carrier protein) reductase | 2.6E-56 | 42 | 282 |
| PF00106 | adh_short | short chain dehydrogenase | 2.7E-46 | 36 | 231 |
| PF08659 | KR | KR domain | 5.9E-14 | 38 | 186 |
| PF01370 | Epimerase | NAD dependent epimerase/dehydratase family | 9.0E-06 | 38 | 212 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 18 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 57.37 | 31.49 | 83.25 |
| 5d_25C | Five days - 25 degrees Celsius | 64.71 | 36.66 | 92.75 |
| 7d_25C | Seven days - 25 degrees Celsius | 97.58 | 58.45 | 136.71 |
| 10d_25C | Ten days - 25 degrees Celsius | 158.57 | 97.14 | 220.00 |
| 7d_15C | Seven days - 15 degrees Celsius | 115.56 | 60.19 | 170.92 |
| 7d_30C | Seven days - 30 degrees Celsius | 303.94 | 176.37 | 431.52 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.702973 | no |
| 3d_25C | 7d_25C | 0.019353 | yes |
| 3d_25C | 7d_15C | 0.002297 | yes |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.070025 | no |
| 5d_25C | 7d_15C | 0.014971 | yes |
| 5d_25C | 7d_30C | 0.000700 | yes |
| 5d_25C | 10d_25C | 0.000700 | yes |
| 7d_25C | 7d_15C | 0.561791 | no |
| 7d_25C | 7d_30C | 0.000700 | yes |
| 7d_25C | 10d_25C | 0.018838 | yes |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.217514 | no |
| 7d_30C | 10d_25C | 0.001278 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4946.t1 MSVSIETTTVPTAPITAQPVLLGQKSRMPEFSLAGKVVLVSGAARGLGLTQTEALLEAGAKVYALDRLEEPAPEF EQIQQRAMELGTELHYRRIDVRDTELLNSVIETIANEEGRMDGLIAAAGIQQETPALEYSAKDSNTMFEVNVTGV FMTAQAVAKQMIRFGNGGSIAMIASMSGTIANRGLICPAYNASKAAVLQLARNLASEWGTYNIRVNTISPGYIVT AMVEKLFLEFPERRDQWPKENMLARLSRPEEYRGAAVFLISDASSFMTGSDLRMDGGHAAW* |
| Coding | >Pro_DTO377G3_2|g4946.t1 ATGTCTGTCTCCATCGAAACCACTACAGTTCCCACTGCACCCATTACCGCCCAGCCCGTCCTGCTGGGCCAGAAG TCCAGAATGCCCGAGTTCAGTCTCGCTGGGAAGGTGGTGTTGGTCTCAGGTGCTGCCCGTGGTCTAGGATTGACC CAGACAGAGGCACTCCTGGAGGCCGGAGCGAAGGTATACGCACTCGACCGTCTGGAAGAGCCGGCCCCCGAGTTT GAGCAGATCCAACAGCGCGCAATGGAGCTTGGCACCGAGTTGCACTACCGTCGTATCGACGTGCGTGACACAGAA CTTCTCAACAGTGTCATCGAGACCATCGCCAATGAAGAGGGCCGCATGGATGGTCTCATTGCAGCAGCGGGCATT CAGCAGGAGACCCCAGCGCTCGAATACTCAGCCAAGGACAGCAACACCATGTTCGAGGTCAATGTCACGGGGGTG TTCATGACCGCCCAGGCTGTGGCTAAGCAAATGATTCGCTTTGGAAACGGAGGTAGTATCGCTATGATCGCCTCT ATGAGCGGCACTATTGCCAATCGCGGTCTTATTTGCCCCGCATATAACGCTAGCAAGGCTGCTGTCCTTCAACTC GCCCGCAACCTCGCTTCTGAATGGGGCACCTACAACATCCGCGTGAATACCATCTCCCCTGGCTACATTGTCACC GCCATGGTTGAGAAGCTCTTTCTCGAGTTTCCCGAACGTCGCGACCAGTGGCCCAAGGAGAACATGCTTGCCCGT CTTTCCCGACCGGAAGAGTACCGTGGTGCCGCTGTCTTCTTGATTAGCGATGCTAGCAGCTTCATGACTGGAAGT GACCTGCGAATGGATGGTGGCCACGCCGCATGGTAG |
| Transcript | >Pro_DTO377G3_2|g4946.t1 ATGTCTGTCTCCATCGAAACCACTACAGTTCCCACTGCACCCATTACCGCCCAGCCCGTCCTGCTGGGCCAGAAG TCCAGAATGCCCGAGTTCAGTCTCGCTGGGAAGGTGGTGTTGGTCTCAGGTGCTGCCCGTGGTCTAGGATTGACC CAGACAGAGGCACTCCTGGAGGCCGGAGCGAAGGTATACGCACTCGACCGTCTGGAAGAGCCGGCCCCCGAGTTT GAGCAGATCCAACAGCGCGCAATGGAGCTTGGCACCGAGTTGCACTACCGTCGTATCGACGTGCGTGACACAGAA CTTCTCAACAGTGTCATCGAGACCATCGCCAATGAAGAGGGCCGCATGGATGGTCTCATTGCAGCAGCGGGCATT CAGCAGGAGACCCCAGCGCTCGAATACTCAGCCAAGGACAGCAACACCATGTTCGAGGTCAATGTCACGGGGGTG TTCATGACCGCCCAGGCTGTGGCTAAGCAAATGATTCGCTTTGGAAACGGAGGTAGTATCGCTATGATCGCCTCT ATGAGCGGCACTATTGCCAATCGCGGTCTTATTTGCCCCGCATATAACGCTAGCAAGGCTGCTGTCCTTCAACTC GCCCGCAACCTCGCTTCTGAATGGGGCACCTACAACATCCGCGTGAATACCATCTCCCCTGGCTACATTGTCACC GCCATGGTTGAGAAGCTCTTTCTCGAGTTTCCCGAACGTCGCGACCAGTGGCCCAAGGAGAACATGCTTGCCCGT CTTTCCCGACCGGAAGAGTACCGTGGTGCCGCTGTCTTCTTGATTAGCGATGCTAGCAGCTTCATGACTGGAAGT GACCTGCGAATGGATGGTGGCCACGCCGCATGGTAG |
| Gene | >Pro_DTO377G3_2|g4946.t1 ATGTCTGTCTCCATCGAAACCACTACAGTTCCCACTGCACCCATTACCGCCCAGCCCGTCCTGCTGGGCCAGAAG TCCAGAATGCCCGAGTTCAGTCTCGCTGGGAAGGTGGTGTTGGTCTCAGGTGCTGCCCGTGGTCTAGGATTGACC CAGACAGAGGCACTCCTGGAGGCCGGAGCGAAGGTATACGCACTCGACCGTCTGGAAGAGCCGGTAAGTATCTAC ATCCCTCGCTTCTATGGCAGCACTAAACTAACAACCACTCAATCACCAGGCCCCCGAGTTTGAGCAGATCCAACA GCGCGCAATGGAGCTTGGCACCGAGTTGCACTACCGTCGTATCGACGTGCGTGACACAGAACTTCTCAACAGTGT CATCGAGACCATCGCCAATGAAGAGGGCCGCATGGATGGTCTCATTGCAGCAGCGGGCATTCAGCAGGAGACCCC AGCGCTCGAATACTCAGCCAAGGACAGCAACACCATGTTCGAGGTCAATGTCACGGGGGTGTTCATGACCGCCCA GGCTGTGGCTAAGCAAATGATTCGCTTTGGAAACGGAGGTAGTATCGCTATGATCGCCTCTATGAGCGGCACTAT TGCCAATCGCGTACGTTCCCACTCCCCTCTCAGACTTTCTTTCTCTCTATGGAACATTTCCCCGCTTCATGTCAC ATTCCGCTCTTCTGGCTGGCCTCGATGATCTAACATATTCTCCCTACAGGGTCTTATTTGCCCCGCATATAACGC TAGCAAGGCTGCTGTCCTTCAACTCGCCCGCAACCTCGCTTCTGAATGGGGCACCTACAACATCCGCGTGAATAC CATCTCCCCTGGCTACATTGTCACCGCCATGGTTGAGAAGCTCTTTCTCGAGTTTCCCGAACGTCGCGACCAGTG GCCCAAGGAGAACATGCTTGCCCGTCTTTCCCGACCGGAAGAGTACCGTGGTGCCGCTGTCTTCTTGATTAGCGA TGCTAGCAGCTTCATGACTGGAAGTGACCTGCGAATGGATGGTGGCCACGCCGCATGGTAG |