© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4929.t1 |
| Gene name | |
| Location | scaffold_11:87602..89831 |
| Strand | + |
| Gene length (bp) | 2229 |
| Transcript length (bp) | 1920 |
| Coding sequence length (bp) | 1920 |
| Protein length (aa) | 640 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02836 | Glyco_hydro_2_C | Glycosyl hydrolases family 2, TIM barrel domain | 3.3E-13 | 358 | 486 |
| PF02837 | Glyco_hydro_2_N | Glycosyl hydrolases family 2, sugar binding domain | 6.4E-12 | 118 | 226 |
| PF00703 | Glyco_hydro_2 | Glycosyl hydrolases family 2 | 9.3E-12 | 235 | 317 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | Yes |
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds | No |
| GO:0008150 | biological_process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0016787 | hydrolase activity | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 19 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 5.79 | 2.27 | 9.31 |
| 5d_25C | Five days - 25 degrees Celsius | 3.48 | 0.98 | 5.98 |
| 7d_25C | Seven days - 25 degrees Celsius | 2.80 | 0.79 | 4.81 |
| 10d_25C | Ten days - 25 degrees Celsius | 1.74 | 0.29 | 3.18 |
| 7d_15C | Seven days - 15 degrees Celsius | 3.70 | 1.07 | 6.33 |
| 7d_30C | Seven days - 30 degrees Celsius | 26.34 | 14.28 | 38.40 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.196395 | no |
| 3d_25C | 7d_25C | 0.044585 | yes |
| 3d_25C | 7d_15C | 0.261106 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.002297 | yes |
| 5d_25C | 7d_25C | 0.678788 | no |
| 5d_25C | 7d_15C | 0.924786 | no |
| 5d_25C | 7d_30C | 0.000700 | yes |
| 5d_25C | 10d_25C | 0.114216 | no |
| 7d_25C | 7d_15C | 0.574624 | no |
| 7d_25C | 7d_30C | 0.000700 | yes |
| 7d_25C | 10d_25C | 0.314955 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.078000 | no |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4929.t1 MHLAQSFLLSCLVATGLALPSTEHQENKARSVGYSLKEPPLTTPWTDKVGTNPWPEYPRPLLQRSEWKNLNGVWK YQNAEGLDAVQQPPFGQVLAQDVLIPSCLESGLSGIQSDWALYSWFSTSFEVSPSWKGEQVLLNFGAVDYEATVF VNGEKAGFHRGGYFRFAVDVTKYLKFDQQNELLVFVHDPTDDGDYVIPIGKQTLRPSHIFYTPCSGIWQTVWLEA APSNHITQLDLDANMDGQVNITVHSSAKEKSAQAEVTVHQDGKTVATHKGPTNEPFQFIVSSPKLWSPDSPNLYN VTVKLGEDLVESYIGFRTVSRGTVDGIERPLLNGKFIFMFGTLDQGYWPDGLYTPPSKEAMVYDLEMLKKLGFNM VRKHIKVETDLFYQACDELGLLVIQDMPSLRPSQSKRDANGNSVTILPDEKQQAEFTRQLDLLVNQLKSFPSIVT WVIYNEAWGQITEYYPEFELTERVRQLDPTRLVDSTTGWDDHGAGDFSDNHHYANPQCGTPFYSTPSSPYDPTRI GFQGEFGGIGSNVSMEHLWNNQAAIDTIDQTYEIDTTIEAWNYRSHLLLTELEDQIRLYACSGGVWTQTTDVEGE VNGLLTYDRRVARVQVKQWQADIKALYDAAAARATTTGN* |
| Coding | >Pro_DTO377G3_2|g4929.t1 ATGCATTTGGCTCAGAGTTTTCTCTTGTCGTGTCTAGTGGCAACTGGTCTAGCTCTCCCTAGTACCGAGCACCAG GAAAACAAGGCGCGCAGTGTGGGTTACTCTCTTAAGGAGCCTCCCTTGACAACGCCATGGACCGACAAAGTCGGA ACGAACCCATGGCCCGAATATCCGCGACCGTTACTGCAGCGTTCTGAATGGAAGAATCTCAACGGGGTGTGGAAG TACCAAAATGCCGAAGGTCTCGATGCTGTTCAGCAGCCCCCTTTTGGGCAGGTACTTGCGCAGGATGTTTTGATT CCATCGTGTCTTGAGAGTGGATTGTCCGGCATTCAAAGCGATTGGGCTTTGTACTCTTGGTTTTCGACATCCTTC GAGGTATCTCCTTCTTGGAAGGGTGAACAGGTACTGCTCAATTTTGGAGCCGTAGACTACGAAGCCACTGTCTTT GTCAATGGTGAAAAGGCAGGCTTCCACCGTGGCGGATACTTCCGCTTCGCGGTAGACGTGACAAAGTACCTGAAG TTTGATCAGCAGAATGAGCTACTTGTTTTCGTACATGATCCTACCGACGATGGGGACTATGTGATCCCCATTGGA AAGCAGACCCTGAGACCTAGTCACATCTTTTATACCCCGTGCAGTGGGATATGGCAAACTGTTTGGCTGGAGGCT GCCCCATCCAATCACATCACCCAACTCGATCTTGACGCAAACATGGATGGTCAAGTAAATATCACTGTACACAGC TCTGCTAAGGAGAAATCCGCCCAGGCCGAAGTCACTGTCCATCAAGATGGCAAGACTGTTGCAACCCACAAAGGC CCCACTAACGAGCCATTCCAATTCATCGTATCTTCGCCCAAACTCTGGTCTCCGGACTCCCCAAACCTGTACAAT GTGACTGTCAAACTTGGCGAAGATCTAGTGGAGAGCTATATAGGCTTCCGTACAGTCTCCAGGGGTACGGTTGAC GGAATTGAGCGACCCCTGCTCAATGGAAAATTCATTTTCATGTTCGGTACTCTGGACCAAGGCTATTGGCCCGAC GGTTTATACACGCCCCCCAGCAAAGAGGCGATGGTGTACGATTTGGAAATGTTGAAGAAGTTGGGATTCAACATG GTGCGCAAGCATATCAAAGTCGAGACCGATCTGTTCTATCAAGCCTGCGACGAGCTCGGTCTGCTTGTAATCCAG GACATGCCTTCCCTGCGCCCGTCGCAGTCCAAGAGGGACGCAAATGGAAACTCAGTTACTATCCTACCGGACGAG AAGCAGCAGGCTGAGTTCACTCGCCAGTTGGACCTGTTGGTTAACCAATTGAAGAGCTTCCCTAGTATCGTAACT TGGGTCATCTACAACGAAGCCTGGGGCCAGATCACAGAATACTACCCCGAGTTTGAGCTGACCGAGCGGGTTAGA CAGCTGGACCCCACTCGGCTTGTGGACTCGACGACGGGCTGGGACGACCACGGCGCTGGAGACTTTAGTGACAAT CACCATTACGCAAATCCACAATGTGGCACCCCCTTTTATTCCACACCCTCGAGCCCCTACGATCCCACCCGGATT GGATTCCAGGGCGAATTCGGCGGCATCGGGAGTAATGTGTCCATGGAGCATCTGTGGAACAACCAAGCGGCCATC GATACAATTGACCAGACGTACGAGATTGACACCACCATTGAGGCATGGAATTACCGTAGTCACCTTCTCCTGACC GAGCTCGAGGATCAGATCCGCCTGTACGCATGCAGTGGGGGGGTCTGGACCCAGACGACCGATGTCGAGGGCGAG GTCAACGGACTGCTTACCTATGACCGTCGCGTGGCCAGAGTCCAGGTGAAGCAGTGGCAGGCGGATATCAAGGCT CTGTATGATGCCGCGGCTGCACGGGCCACGACGACCGGCAATTAG |
| Transcript | >Pro_DTO377G3_2|g4929.t1 ATGCATTTGGCTCAGAGTTTTCTCTTGTCGTGTCTAGTGGCAACTGGTCTAGCTCTCCCTAGTACCGAGCACCAG GAAAACAAGGCGCGCAGTGTGGGTTACTCTCTTAAGGAGCCTCCCTTGACAACGCCATGGACCGACAAAGTCGGA ACGAACCCATGGCCCGAATATCCGCGACCGTTACTGCAGCGTTCTGAATGGAAGAATCTCAACGGGGTGTGGAAG TACCAAAATGCCGAAGGTCTCGATGCTGTTCAGCAGCCCCCTTTTGGGCAGGTACTTGCGCAGGATGTTTTGATT CCATCGTGTCTTGAGAGTGGATTGTCCGGCATTCAAAGCGATTGGGCTTTGTACTCTTGGTTTTCGACATCCTTC GAGGTATCTCCTTCTTGGAAGGGTGAACAGGTACTGCTCAATTTTGGAGCCGTAGACTACGAAGCCACTGTCTTT GTCAATGGTGAAAAGGCAGGCTTCCACCGTGGCGGATACTTCCGCTTCGCGGTAGACGTGACAAAGTACCTGAAG TTTGATCAGCAGAATGAGCTACTTGTTTTCGTACATGATCCTACCGACGATGGGGACTATGTGATCCCCATTGGA AAGCAGACCCTGAGACCTAGTCACATCTTTTATACCCCGTGCAGTGGGATATGGCAAACTGTTTGGCTGGAGGCT GCCCCATCCAATCACATCACCCAACTCGATCTTGACGCAAACATGGATGGTCAAGTAAATATCACTGTACACAGC TCTGCTAAGGAGAAATCCGCCCAGGCCGAAGTCACTGTCCATCAAGATGGCAAGACTGTTGCAACCCACAAAGGC CCCACTAACGAGCCATTCCAATTCATCGTATCTTCGCCCAAACTCTGGTCTCCGGACTCCCCAAACCTGTACAAT GTGACTGTCAAACTTGGCGAAGATCTAGTGGAGAGCTATATAGGCTTCCGTACAGTCTCCAGGGGTACGGTTGAC GGAATTGAGCGACCCCTGCTCAATGGAAAATTCATTTTCATGTTCGGTACTCTGGACCAAGGCTATTGGCCCGAC GGTTTATACACGCCCCCCAGCAAAGAGGCGATGGTGTACGATTTGGAAATGTTGAAGAAGTTGGGATTCAACATG GTGCGCAAGCATATCAAAGTCGAGACCGATCTGTTCTATCAAGCCTGCGACGAGCTCGGTCTGCTTGTAATCCAG GACATGCCTTCCCTGCGCCCGTCGCAGTCCAAGAGGGACGCAAATGGAAACTCAGTTACTATCCTACCGGACGAG AAGCAGCAGGCTGAGTTCACTCGCCAGTTGGACCTGTTGGTTAACCAATTGAAGAGCTTCCCTAGTATCGTAACT TGGGTCATCTACAACGAAGCCTGGGGCCAGATCACAGAATACTACCCCGAGTTTGAGCTGACCGAGCGGGTTAGA CAGCTGGACCCCACTCGGCTTGTGGACTCGACGACGGGCTGGGACGACCACGGCGCTGGAGACTTTAGTGACAAT CACCATTACGCAAATCCACAATGTGGCACCCCCTTTTATTCCACACCCTCGAGCCCCTACGATCCCACCCGGATT GGATTCCAGGGCGAATTCGGCGGCATCGGGAGTAATGTGTCCATGGAGCATCTGTGGAACAACCAAGCGGCCATC GATACAATTGACCAGACGTACGAGATTGACACCACCATTGAGGCATGGAATTACCGTAGTCACCTTCTCCTGACC GAGCTCGAGGATCAGATCCGCCTGTACGCATGCAGTGGGGGGGTCTGGACCCAGACGACCGATGTCGAGGGCGAG GTCAACGGACTGCTTACCTATGACCGTCGCGTGGCCAGAGTCCAGGTGAAGCAGTGGCAGGCGGATATCAAGGCT CTGTATGATGCCGCGGCTGCACGGGCCACGACGACCGGCAATTAG |
| Gene | >Pro_DTO377G3_2|g4929.t1 ATGCATTTGGCTCAGAGTTTTCTCTTGTCGTGTCTAGTGGCAACTGGTCTAGCTCTCCCTAGTACCGAGCACCAG GAAAACAAGGCGCGCAGTGTGGGTTACTCTCTTAAGGAGCCTCCCTTGACAACGCCATGGACCGACAAAGTCGGA ACGAACCCATGGCCCGAATATCCGCGACCGTTACTGCAGCGTTCTGAATGGAAGAATCTCAACGGGGTGTGGAAG TACCAAAATGCCGAAGGTCTCGATGCTGTTCAGCAGCCCCCTTTTGGGCAGGTACTTGCGCAGGATGTTTTGATT CCATCGTGTCTTGAGAGTGGATTGTCCGGTAGGTCCTCTCCTGCTTACTGCGTTAGCATCGAGAATTGATAAATT CGCAGGCATTCAAAGCGATTGGGCTTTGTACTCTTGGTTTTCGACATCCTTCGAGGTATCTCCTTCTTGGAAGGG TGAACAGGTACTGCTCAATTTTGGAGCCGTAGACTACGAAGCCACTGTCTTTGTCAATGGTGAAAAGGCAGGCTT CCACCGTGGCGGATACTTCCGCTTCGCGGTAGACGTGACAAAGTACCTGAAGTTTGATCAGCAGAATGAGCTGTG AGTATCTCAGGATCCTAAACAGTCTGCACATCTGACTTTGAATACAGACTTGTTTTCGTACATGATCCTACCGAC GATGGGGACTATGTGATCCCCATTGGAAAGCAGACCCTGAGACCTAGTCACATCTTTTATACCCCGTGCAGTGGG ATATGGCAAACTGTTTGGCTGGAGGCTGCCCCATCCAATCACATCACCCAACTCGATCTTGACGCAAACATGGAT GGTCAAGGTAAGTCTCTGAGTTTGTGGAAATGCTGCTTGATTCTGACCGTGTAGTAAATATCACTGTACACAGCT CTGCTAAGGAGAAATCCGCCCAGGCCGAAGTCACTGTCCATCAAGATGGCAAGACTGTTGCAACCCACAAAGGCC CCACTAACGAGCCATTCCAATTCATCGTATCTTCGCCCAAACTCTGGTCTCCGGACTCCCCAAACCTGTACAATG TGACTGTCAAACTTGGCGAAGATCTAGTGGAGAGCTATATAGGCTTCCGTACAGTCTCCAGGGGTACGGTTGACG GAATTGAGCGACCCCTGCTCAATGGAAAATTCATTTTCATGTTCGGTACTCTGGACCAAGGCTATTGGCCCGACG GTTTATACACGCCCCCCAGCAAAGAGGCGATGGTGTACGATTTGGAAATGTTGAAGAAGTTGGGATTCAACATGG TGCGCAAGCATGTGAGTGTCGCCGCGTTGCATATCACATGGTTTCTCGCGCTCACACCGTGGAATGTAGATCAAA GTCGAGACCGATCTGTTCTATCAAGCCTGCGACGAGCTCGGTCTGCTTGTAATCCAGGACATGCCTTCCCTGCGC CCGTCGCAGTCCAAGAGGGACGCAAATGGAAACTCAGTTACTATCCTACCGGACGAGAAGCAGCAGGCTGAGTTC ACTCGCCAGTTGGACCTGTTGGTTAACCAATTGAAGAGCTTCCCTAGTATCGTAACTTGGGTAAGTCATGATGTG AAACCGAAAGACCAGACGTTAACCACTATCTAGGTCATCTACAACGAAGCCTGGGGCCAGATCACAGAATACTAC CCCGAGTTTGAGCTGACCGAGCGGGTTAGACAGCTGGACCCCACTCGGCTTGTGGACTCGACGACGGGCTGGGAC GACCACGGCGCTGGAGACTTTAGTGTATGCGCCCCTGTGGCCCAGGCTCCAGCCACGTGGCTCACTAACATCTCG TAGGACAATCACCATTACGCAAATCCACAATGTGGCACCCCCTTTTATTCCACACCCTCGAGCCCCTACGATCCC ACCCGGATTGGATTCCAGGGCGAATTCGGCGGCATCGGGAGTAATGTGTCCATGGAGCATCTGTGGAACAACCAA GCGGCCATCGATACAATTGACCAGACGTACGAGATTGACACCACCATTGAGGCATGGAATTACCGTAGTCACCTT CTCCTGACCGAGCTCGAGGATCAGATCCGCCTGTACGCATGCAGTGGGGGGGTCTGGACCCAGACGACCGATGTC GAGGGCGAGGTCAACGGACTGCTTACCTATGACCGTCGCGTGGCCAGAGTCCAGGTGAAGCAGTGGCAGGCGGAT ATCAAGGCTCTGTATGATGCCGCGGCTGCACGGGCCACGACGACCGGCAATTAG |