© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4922.t1 |
| Gene name | |
| Location | scaffold_11:68560..70136 |
| Strand | - |
| Gene length (bp) | 1576 |
| Transcript length (bp) | 1461 |
| Coding sequence length (bp) | 1461 |
| Protein length (aa) | 487 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04757 | Pex2_Pex12 | Pex2 / Pex12 amino terminal region | 1.1E-36 | 84 | 283 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 28 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 42.65 | 25.06 | 60.23 |
| 5d_25C | Five days - 25 degrees Celsius | 50.86 | 30.35 | 71.37 |
| 7d_25C | Seven days - 25 degrees Celsius | 57.28 | 34.50 | 80.06 |
| 10d_25C | Ten days - 25 degrees Celsius | 69.36 | 42.15 | 96.57 |
| 7d_15C | Seven days - 15 degrees Celsius | 51.77 | 30.62 | 72.93 |
| 7d_30C | Seven days - 30 degrees Celsius | 48.04 | 28.31 | 67.77 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.504261 | no |
| 3d_25C | 7d_25C | 0.206335 | no |
| 3d_25C | 7d_15C | 0.457911 | no |
| 3d_25C | 7d_30C | 0.685447 | no |
| 3d_25C | 10d_25C | 0.020393 | yes |
| 5d_25C | 7d_25C | 0.685621 | no |
| 5d_25C | 7d_15C | 0.961507 | no |
| 5d_25C | 7d_30C | 0.864392 | no |
| 5d_25C | 10d_25C | 0.174239 | no |
| 7d_25C | 7d_15C | 0.741981 | no |
| 7d_25C | 7d_30C | 0.510675 | no |
| 7d_25C | 10d_25C | 0.451938 | no |
| 7d_15C | 7d_30C | 0.819374 | no |
| 7d_15C | 10d_25C | 0.206795 | no |
| 7d_30C | 10d_25C | 0.096455 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4922.t1 MSSTNFAAAQERVLQRRRQREAEARARYAAQQRASPISPATVQRLPYPLNRLPGSGWRIWNSIKGREGTRPAFRV GQVDAELLDEELLGLLKGQVGDALKYFGPQMREDWSHEILFALRAMLFKLSIWDHNASYGAALQGLKYTDSRSKG PVFSSPTKWQKGIYGLLTVGGRYAWDKWESWLVGQEGGYDEPSPDIRMLSRLTDMISTSHSIAAFVSFLVFLVNG RYRTLVDRILRIRLTPPSAQASREVSFEYLNRQLVWHAFTEFLLFLLPLVGIGRWRRWISRVWKKMVNSVRSSGD DDETPEKQGELAFLPERTCAICYYDQNPTTTTESDTIAASASGGIVGSAQTDITNPYETVPCGCIYCFVCIVQKL EAEEGQGWSCLRCGEIVKKCQPWNGDVLEEARSQPGTGKIVGFAIDGELNGETRGTDLHQGGSSNKSSPLQEISA DEALQHSEQWSTIEKEAEDDGRRGTNEDEGPNPAAM* |
| Coding | >Pro_DTO377G3_2|g4922.t1 ATGAGTTCAACAAACTTCGCCGCTGCACAAGAACGAGTTCTTCAACGTCGTCGCCAGCGTGAGGCGGAAGCGCGC GCCCGCTATGCAGCACAGCAGCGGGCCTCTCCGATCAGCCCGGCCACCGTCCAGCGTCTGCCATATCCATTGAAT CGATTACCCGGTTCGGGGTGGCGGATATGGAATTCCATCAAGGGCCGGGAAGGCACGCGCCCCGCATTTCGAGTG GGCCAGGTGGACGCTGAATTGTTGGATGAGGAGTTGCTTGGGCTGCTGAAGGGCCAGGTCGGGGATGCTCTCAAA TACTTCGGGCCTCAAATGCGCGAAGATTGGTCACATGAGATTCTGTTCGCGTTACGGGCCATGCTCTTTAAACTA TCAATATGGGATCATAACGCATCGTATGGTGCGGCACTACAAGGCCTCAAATACACCGATAGTCGAAGCAAAGGA CCCGTTTTCTCTTCTCCGACAAAATGGCAGAAGGGTATTTATGGCTTATTGACGGTTGGAGGGCGATATGCTTGG GACAAGTGGGAGAGCTGGTTGGTCGGACAAGAAGGTGGCTATGACGAGCCATCACCGGACATCCGAATGCTGTCG CGACTAACAGACATGATCTCGACATCGCACTCGATTGCTGCCTTCGTCTCTTTCCTGGTATTCCTAGTGAATGGC CGATACCGTACCTTGGTCGATCGCATCCTTCGAATCCGCCTTACTCCACCGTCTGCGCAGGCTAGCCGGGAAGTA TCCTTTGAGTATTTAAACCGTCAACTAGTTTGGCATGCTTTTACCGAATTCCTTCTTTTCCTCCTTCCTCTTGTT GGAATTGGCCGCTGGCGGCGATGGATATCCCGGGTCTGGAAAAAGATGGTCAATTCTGTCCGGTCAAGCGGCGAT GACGACGAGACCCCCGAAAAACAAGGAGAGCTGGCCTTCCTCCCAGAGCGAACCTGTGCTATCTGCTACTACGAT CAGAACCCCACCACAACGACCGAAAGCGATACCATAGCCGCCTCTGCGTCAGGGGGTATTGTAGGATCGGCGCAA ACTGATATCACAAACCCATATGAGACCGTCCCTTGCGGCTGTATCTATTGTTTCGTCTGTATTGTGCAGAAACTG GAAGCGGAAGAAGGCCAGGGATGGTCTTGCCTCCGGTGTGGTGAAATTGTCAAGAAGTGCCAACCTTGGAATGGC GATGTGCTAGAAGAGGCGCGGTCGCAGCCTGGAACTGGGAAGATTGTTGGCTTTGCCATTGACGGTGAACTGAAT GGCGAGACCCGTGGGACAGATCTTCATCAAGGGGGCTCATCAAATAAGTCTAGCCCATTGCAAGAGATCAGTGCC GATGAAGCCCTGCAGCATTCAGAGCAATGGTCCACCATTGAGAAAGAGGCAGAAGATGATGGCAGAAGAGGTACG AACGAGGATGAGGGCCCAAACCCTGCTGCGATGTGA |
| Transcript | >Pro_DTO377G3_2|g4922.t1 ATGAGTTCAACAAACTTCGCCGCTGCACAAGAACGAGTTCTTCAACGTCGTCGCCAGCGTGAGGCGGAAGCGCGC GCCCGCTATGCAGCACAGCAGCGGGCCTCTCCGATCAGCCCGGCCACCGTCCAGCGTCTGCCATATCCATTGAAT CGATTACCCGGTTCGGGGTGGCGGATATGGAATTCCATCAAGGGCCGGGAAGGCACGCGCCCCGCATTTCGAGTG GGCCAGGTGGACGCTGAATTGTTGGATGAGGAGTTGCTTGGGCTGCTGAAGGGCCAGGTCGGGGATGCTCTCAAA TACTTCGGGCCTCAAATGCGCGAAGATTGGTCACATGAGATTCTGTTCGCGTTACGGGCCATGCTCTTTAAACTA TCAATATGGGATCATAACGCATCGTATGGTGCGGCACTACAAGGCCTCAAATACACCGATAGTCGAAGCAAAGGA CCCGTTTTCTCTTCTCCGACAAAATGGCAGAAGGGTATTTATGGCTTATTGACGGTTGGAGGGCGATATGCTTGG GACAAGTGGGAGAGCTGGTTGGTCGGACAAGAAGGTGGCTATGACGAGCCATCACCGGACATCCGAATGCTGTCG CGACTAACAGACATGATCTCGACATCGCACTCGATTGCTGCCTTCGTCTCTTTCCTGGTATTCCTAGTGAATGGC CGATACCGTACCTTGGTCGATCGCATCCTTCGAATCCGCCTTACTCCACCGTCTGCGCAGGCTAGCCGGGAAGTA TCCTTTGAGTATTTAAACCGTCAACTAGTTTGGCATGCTTTTACCGAATTCCTTCTTTTCCTCCTTCCTCTTGTT GGAATTGGCCGCTGGCGGCGATGGATATCCCGGGTCTGGAAAAAGATGGTCAATTCTGTCCGGTCAAGCGGCGAT GACGACGAGACCCCCGAAAAACAAGGAGAGCTGGCCTTCCTCCCAGAGCGAACCTGTGCTATCTGCTACTACGAT CAGAACCCCACCACAACGACCGAAAGCGATACCATAGCCGCCTCTGCGTCAGGGGGTATTGTAGGATCGGCGCAA ACTGATATCACAAACCCATATGAGACCGTCCCTTGCGGCTGTATCTATTGTTTCGTCTGTATTGTGCAGAAACTG GAAGCGGAAGAAGGCCAGGGATGGTCTTGCCTCCGGTGTGGTGAAATTGTCAAGAAGTGCCAACCTTGGAATGGC GATGTGCTAGAAGAGGCGCGGTCGCAGCCTGGAACTGGGAAGATTGTTGGCTTTGCCATTGACGGTGAACTGAAT GGCGAGACCCGTGGGACAGATCTTCATCAAGGGGGCTCATCAAATAAGTCTAGCCCATTGCAAGAGATCAGTGCC GATGAAGCCCTGCAGCATTCAGAGCAATGGTCCACCATTGAGAAAGAGGCAGAAGATGATGGCAGAAGAGGTACG AACGAGGATGAGGGCCCAAACCCTGCTGCGATGTGA |
| Gene | >Pro_DTO377G3_2|g4922.t1 ATGAGTTCAACAAACTTCGCCGCTGCACAAGAACGAGTTCTTCAACGTCGTCGCCAGCGTGAGGCGGAAGCGCGC GCCCGCTATGCAGCACAGCAGCGGGCCTCTCCGATCAGCCCGGCCACCGTCCAGCGTCTGCCATATCCATTGAAT CGATTACCCGGTTCGGGGTGGCGGATATGGAATTCCATCAAGGGCCGGGAAGGCACGCGCCCCGCATTTCGAGTG GGCCAGGTGGACGCTGAATTGTTGGATGAGGAGTTGCTTGGGCTGCTGAAGGGCCAGGTCGGGGATGCTCTCAAA TACTTCGGGGTATGTCTGAATGAGGCTCTGGGGTGTTGTGAGAAAAAGTAGCTGACACCGACAATAGCCTCAAAT GCGCGAAGATTGGTCACATGAGATTCTGTTCGCGTTACGGGCCATGCTCTTTAAACTATCAATATGGGATCATAA CGCATCGTATGGTGCGGCACTACAAGGCCTCAAATACACCGATAGTCGAAGCAAAGGACCCGTTTTCTCTTCTCC GACAAAATGGCAGAAGGGTATTTATGGCTTATTGACGGTTGGAGGGCGATATGCTTGGGACAAGTGGGAGAGCTG GTTGGTCGGACAAGAAGGTGGCTATGACGAGGTTAGTGCCGACACATTGCTCTCTATTGGCAATGCTTTACTAAC AGATACTACAAAGCCATCACCGGACATCCGAATGCTGTCGCGACTAACAGACATGATCTCGACATCGCACTCGAT TGCTGCCTTCGTCTCTTTCCTGGTATTCCTAGTGAATGGCCGATACCGTACCTTGGTCGATCGCATCCTTCGAAT CCGCCTTACTCCACCGTCTGCGCAGGCTAGCCGGGAAGTATCCTTTGAGTATTTAAACCGTCAACTAGTTTGGCA TGCTTTTACCGAATTCCTTCTTTTCCTCCTTCCTCTTGTTGGAATTGGCCGCTGGCGGCGATGGATATCCCGGGT CTGGAAAAAGATGGTCAATTCTGTCCGGTCAAGCGGCGATGACGACGAGACCCCCGAAAAACAAGGAGAGCTGGC CTTCCTCCCAGAGCGAACCTGTGCTATCTGCTACTACGATCAGAACCCCACCACAACGACCGAAAGCGATACCAT AGCCGCCTCTGCGTCAGGGGGTATTGTAGGATCGGCGCAAACTGATATCACAAACCCATATGAGACCGTCCCTTG CGGCTGTATCTATTGTTTCGTCTGTATTGTGCAGAAACTGGAAGCGGAAGAAGGCCAGGGATGGTCTTGCCTCCG GTGTGGTGAAATTGTCAAGAAGTGCCAACCTTGGAATGGCGATGTGCTAGAAGAGGCGCGGTCGCAGCCTGGAAC TGGGAAGATTGTTGGCTTTGCCATTGACGGTGAACTGAATGGCGAGACCCGTGGGACAGATCTTCATCAAGGGGG CTCATCAAATAAGTCTAGCCCATTGCAAGAGATCAGTGCCGATGAAGCCCTGCAGCATTCAGAGCAATGGTCCAC CATTGAGAAAGAGGCAGAAGATGATGGCAGAAGAGGTACGAACGAGGATGAGGGCCCAAACCCTGCTGCGATGTG A |