© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4921.t1 |
| Gene name | |
| Location | scaffold_11:67638..68313 |
| Strand | + |
| Gene length (bp) | 675 |
| Transcript length (bp) | 624 |
| Coding sequence length (bp) | 624 |
| Protein length (aa) | 208 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08592 | Anthrone_oxy | Anthrone oxygenase | 1.4E-20 | 63 | 194 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 21 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 10 | 32 | 22 |
| 2 | 73 | 92 | 19 |
| 3 | 107 | 129 | 22 |
| 4 | 184 | 206 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 1197.05 | 686.07 | 1708.03 |
| 5d_25C | Five days - 25 degrees Celsius | 1309.47 | 746.88 | 1872.06 |
| 7d_25C | Seven days - 25 degrees Celsius | 1154.87 | 643.19 | 1666.54 |
| 10d_25C | Ten days - 25 degrees Celsius | 1461.99 | 818.96 | 2105.02 |
| 7d_15C | Seven days - 15 degrees Celsius | 1431.20 | 770.46 | 2091.95 |
| 7d_30C | Seven days - 30 degrees Celsius | 1096.42 | 619.42 | 1573.42 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.783249 | no |
| 3d_25C | 7d_25C | 0.923422 | no |
| 3d_25C | 7d_15C | 0.547542 | no |
| 3d_25C | 7d_30C | 0.790664 | no |
| 3d_25C | 10d_25C | 0.473179 | no |
| 5d_25C | 7d_25C | 0.686701 | no |
| 5d_25C | 7d_15C | 0.796287 | no |
| 5d_25C | 7d_30C | 0.532032 | no |
| 5d_25C | 10d_25C | 0.738113 | no |
| 7d_25C | 7d_15C | 0.465254 | no |
| 7d_25C | 7d_30C | 0.889054 | no |
| 7d_25C | 10d_25C | 0.394149 | no |
| 7d_15C | 7d_30C | 0.328484 | no |
| 7d_15C | 10d_25C | 0.958866 | no |
| 7d_30C | 10d_25C | 0.265084 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4921.t1 MATDVRIAQAIGTLGSAVGAGGIASLSIISIPNLIIPARRPPSATLPFHDTPGTSPGHLTHQWLDIYTRGSKIFP GISAVSSLANLYALWALRDSATPAPDIFGSSWSTCYMLAIGFTMSITPFTLTVMRKTNTKLKAHAKRDDAADAEG TEGMVVSPQEKAKRAREDGEVVELLQHWSQLNLIRAVFPLIGAGIGFYTAVSSWMIP* |
| Coding | >Pro_DTO377G3_2|g4921.t1 ATGGCCACCGACGTGAGAATCGCCCAGGCAATAGGGACGCTTGGCTCTGCAGTGGGAGCAGGCGGCATTGCTTCA TTATCCATAATAAGCATCCCCAATCTCATAATTCCAGCCCGTCGCCCACCCAGCGCGACCCTGCCATTCCATGAT ACCCCAGGAACCTCGCCCGGCCATTTGACACACCAGTGGCTCGATATATATACTCGTGGAAGCAAGATTTTCCCC GGTATATCCGCGGTATCTTCACTTGCAAACCTGTATGCGCTCTGGGCATTGCGGGACTCCGCTACCCCTGCGCCG GATATCTTTGGGTCCAGCTGGTCCACGTGCTATATGCTTGCTATCGGGTTTACGATGAGCATTACGCCTTTTACT CTTACAGTTATGAGAAAGACAAATACCAAGCTGAAGGCTCATGCAAAGCGCGATGATGCGGCTGACGCTGAGGGT ACCGAGGGCATGGTAGTTAGTCCACAAGAGAAGGCGAAGCGGGCTAGGGAGGATGGCGAGGTGGTTGAACTTCTG CAGCATTGGTCGCAGTTGAATTTGATCAGAGCTGTGTTTCCACTCATTGGAGCTGGCATTGGGTTCTATACTGCT GTCTCTAGCTGGATGATTCCTTAA |
| Transcript | >Pro_DTO377G3_2|g4921.t1 ATGGCCACCGACGTGAGAATCGCCCAGGCAATAGGGACGCTTGGCTCTGCAGTGGGAGCAGGCGGCATTGCTTCA TTATCCATAATAAGCATCCCCAATCTCATAATTCCAGCCCGTCGCCCACCCAGCGCGACCCTGCCATTCCATGAT ACCCCAGGAACCTCGCCCGGCCATTTGACACACCAGTGGCTCGATATATATACTCGTGGAAGCAAGATTTTCCCC GGTATATCCGCGGTATCTTCACTTGCAAACCTGTATGCGCTCTGGGCATTGCGGGACTCCGCTACCCCTGCGCCG GATATCTTTGGGTCCAGCTGGTCCACGTGCTATATGCTTGCTATCGGGTTTACGATGAGCATTACGCCTTTTACT CTTACAGTTATGAGAAAGACAAATACCAAGCTGAAGGCTCATGCAAAGCGCGATGATGCGGCTGACGCTGAGGGT ACCGAGGGCATGGTAGTTAGTCCACAAGAGAAGGCGAAGCGGGCTAGGGAGGATGGCGAGGTGGTTGAACTTCTG CAGCATTGGTCGCAGTTGAATTTGATCAGAGCTGTGTTTCCACTCATTGGAGCTGGCATTGGGTTCTATACTGCT GTCTCTAGCTGGATGATTCCTTAA |
| Gene | >Pro_DTO377G3_2|g4921.t1 ATGGCCACCGACGTGAGAATCGCCCAGGCAATAGGGACGCTTGGCTCTGCAGTGGGAGCAGGTAAGTAGCACTGC CTACGCAACAGATGGCCAGACACTCATAGTGTACAAGGCGGCATTGCTTCATTATCCATAATAAGCATCCCCAAT CTCATAATTCCAGCCCGTCGCCCACCCAGCGCGACCCTGCCATTCCATGATACCCCAGGAACCTCGCCCGGCCAT TTGACACACCAGTGGCTCGATATATATACTCGTGGAAGCAAGATTTTCCCCGGTATATCCGCGGTATCTTCACTT GCAAACCTGTATGCGCTCTGGGCATTGCGGGACTCCGCTACCCCTGCGCCGGATATCTTTGGGTCCAGCTGGTCC ACGTGCTATATGCTTGCTATCGGGTTTACGATGAGCATTACGCCTTTTACTCTTACAGTTATGAGAAAGACAAAT ACCAAGCTGAAGGCTCATGCAAAGCGCGATGATGCGGCTGACGCTGAGGGTACCGAGGGCATGGTAGTTAGTCCA CAAGAGAAGGCGAAGCGGGCTAGGGAGGATGGCGAGGTGGTTGAACTTCTGCAGCATTGGTCGCAGTTGAATTTG ATCAGAGCTGTGTTTCCACTCATTGGAGCTGGCATTGGGTTCTATACTGCTGTCTCTAGCTGGATGATTCCTTAA |