© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4911.t1 |
| Gene name | |
| Location | scaffold_11:38790..40134 |
| Strand | - |
| Gene length (bp) | 1344 |
| Transcript length (bp) | 1293 |
| Coding sequence length (bp) | 1293 |
| Protein length (aa) | 431 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08449 | UAA | UAA transporter family | 6.4E-44 | 64 | 409 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 13 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 60 | 82 | 22 |
| 2 | 112 | 134 | 22 |
| 3 | 149 | 171 | 22 |
| 4 | 204 | 223 | 19 |
| 5 | 238 | 260 | 22 |
| 6 | 281 | 303 | 22 |
| 7 | 340 | 359 | 19 |
| 8 | 364 | 386 | 22 |
| 9 | 391 | 410 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 37.63 | 20.97 | 54.28 |
| 5d_25C | Five days - 25 degrees Celsius | 28.18 | 14.57 | 41.80 |
| 7d_25C | Seven days - 25 degrees Celsius | 26.09 | 13.22 | 38.96 |
| 10d_25C | Ten days - 25 degrees Celsius | 17.40 | 7.63 | 27.17 |
| 7d_15C | Seven days - 15 degrees Celsius | 28.31 | 13.95 | 42.67 |
| 7d_30C | Seven days - 30 degrees Celsius | 34.47 | 18.02 | 50.92 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.284163 | no |
| 3d_25C | 7d_25C | 0.159527 | no |
| 3d_25C | 7d_15C | 0.315247 | no |
| 3d_25C | 7d_30C | 0.803827 | no |
| 3d_25C | 10d_25C | 0.005235 | yes |
| 5d_25C | 7d_25C | 0.836827 | no |
| 5d_25C | 7d_15C | 0.991883 | no |
| 5d_25C | 7d_30C | 0.518676 | no |
| 5d_25C | 10d_25C | 0.099609 | no |
| 7d_25C | 7d_15C | 0.834313 | no |
| 7d_25C | 7d_30C | 0.334302 | no |
| 7d_25C | 10d_25C | 0.173659 | no |
| 7d_15C | 7d_30C | 0.545065 | no |
| 7d_15C | 10d_25C | 0.104111 | no |
| 7d_30C | 10d_25C | 0.012904 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4911.t1 MGRQKQGAPLKRAPSSQLMHISEESDVGQNSGNNTDTVSTAKGSVSEKASAALETVTDSPGLTQLAICVLGIYAA FLSWGVLQEAITTTSYLVRPATVAEPNPPTERFTYSLVLNTVQSLFAAITGFAYLLFSTPSGQKIPSIFPTRRII VPLLLVAISSSLASPFGYASLEHIDYLTFILAKSCKLLPVMVLHLTIFRKRYPLYKYGVVLMVTLGVATFSLHHP GTSKKVAAKDQSGSSGWGIFLLSINLLLDGLTNTTQDHVFSSPKLYTRFTGPQMMVAQNVLSTVLTSAYLLIMPH LSQSGILHNLLPFPIPPSNETELFGAFSFLSRHPEALKHVLGFAACGAVGQLFIFHTLSRFSSLLLVTVTVTRKM LTMLLSVFWFGHSLSRGQWLGISLVFGGIGAEAVVQRSEKKAKEQSKIEAAKKKL* |
| Coding | >Pro_DTO377G3_2|g4911.t1 ATGGGACGACAAAAGCAAGGCGCGCCGCTCAAGAGAGCCCCTTCTTCTCAATTAATGCACATCTCAGAAGAGTCC GACGTGGGACAGAATTCTGGAAACAATACAGACACAGTCTCGACCGCCAAGGGAAGCGTGTCCGAAAAAGCATCA GCGGCCCTGGAGACAGTCACCGACAGCCCTGGGCTGACGCAACTTGCGATTTGTGTTCTCGGTATATATGCGGCA TTCCTCTCGTGGGGTGTGCTACAGGAGGCGATCACGACAACCAGCTATCTCGTTCGTCCTGCAACCGTTGCGGAG CCAAACCCTCCAACGGAGCGATTCACCTACTCGCTGGTGCTGAACACGGTCCAATCTCTCTTCGCGGCCATCACC GGCTTTGCATACCTACTATTCTCAACACCGAGTGGCCAAAAAATTCCATCTATCTTCCCTACACGCCGGATCATC GTCCCCCTGCTTCTAGTTGCAATCTCCTCGTCACTTGCGTCACCCTTCGGCTACGCCAGTCTCGAACACATTGAC TACCTGACCTTCATCCTCGCCAAGTCATGCAAGCTCCTCCCGGTGATGGTCTTGCACCTGACCATATTCCGCAAG AGATACCCACTGTACAAATACGGTGTTGTCCTGATGGTCACTCTCGGCGTCGCAACCTTCAGTCTGCACCACCCC GGAACTAGTAAGAAAGTCGCTGCCAAGGACCAGTCTGGATCCTCCGGCTGGGGCATCTTCTTGTTGTCAATCAAC CTCCTTTTGGATGGCCTGACCAACACTACGCAAGACCACGTCTTCTCCTCGCCCAAGCTGTACACCCGCTTCACC GGACCCCAGATGATGGTCGCTCAGAATGTTCTCTCGACCGTTCTGACTTCTGCGTACCTCCTGATCATGCCGCAT CTCTCACAGAGCGGGATTTTGCACAACCTCCTGCCATTCCCCATTCCCCCGTCTAATGAGACTGAACTGTTTGGT GCCTTCTCCTTCCTCTCTCGCCACCCAGAGGCACTGAAGCATGTCCTTGGGTTCGCGGCATGCGGGGCTGTTGGC CAGCTTTTCATCTTCCACACTTTGTCTCGTTTCTCTTCACTGTTGCTTGTCACTGTCACCGTTACACGTAAGATG TTGACTATGCTCCTCAGCGTTTTCTGGTTCGGACATTCTCTGTCCCGTGGCCAGTGGCTGGGAATTAGTCTGGTC TTCGGCGGCATTGGCGCCGAAGCAGTGGTACAAAGATCAGAGAAGAAGGCGAAAGAGCAGTCGAAGATTGAGGCT GCAAAGAAGAAGTTGTGA |
| Transcript | >Pro_DTO377G3_2|g4911.t1 ATGGGACGACAAAAGCAAGGCGCGCCGCTCAAGAGAGCCCCTTCTTCTCAATTAATGCACATCTCAGAAGAGTCC GACGTGGGACAGAATTCTGGAAACAATACAGACACAGTCTCGACCGCCAAGGGAAGCGTGTCCGAAAAAGCATCA GCGGCCCTGGAGACAGTCACCGACAGCCCTGGGCTGACGCAACTTGCGATTTGTGTTCTCGGTATATATGCGGCA TTCCTCTCGTGGGGTGTGCTACAGGAGGCGATCACGACAACCAGCTATCTCGTTCGTCCTGCAACCGTTGCGGAG CCAAACCCTCCAACGGAGCGATTCACCTACTCGCTGGTGCTGAACACGGTCCAATCTCTCTTCGCGGCCATCACC GGCTTTGCATACCTACTATTCTCAACACCGAGTGGCCAAAAAATTCCATCTATCTTCCCTACACGCCGGATCATC GTCCCCCTGCTTCTAGTTGCAATCTCCTCGTCACTTGCGTCACCCTTCGGCTACGCCAGTCTCGAACACATTGAC TACCTGACCTTCATCCTCGCCAAGTCATGCAAGCTCCTCCCGGTGATGGTCTTGCACCTGACCATATTCCGCAAG AGATACCCACTGTACAAATACGGTGTTGTCCTGATGGTCACTCTCGGCGTCGCAACCTTCAGTCTGCACCACCCC GGAACTAGTAAGAAAGTCGCTGCCAAGGACCAGTCTGGATCCTCCGGCTGGGGCATCTTCTTGTTGTCAATCAAC CTCCTTTTGGATGGCCTGACCAACACTACGCAAGACCACGTCTTCTCCTCGCCCAAGCTGTACACCCGCTTCACC GGACCCCAGATGATGGTCGCTCAGAATGTTCTCTCGACCGTTCTGACTTCTGCGTACCTCCTGATCATGCCGCAT CTCTCACAGAGCGGGATTTTGCACAACCTCCTGCCATTCCCCATTCCCCCGTCTAATGAGACTGAACTGTTTGGT GCCTTCTCCTTCCTCTCTCGCCACCCAGAGGCACTGAAGCATGTCCTTGGGTTCGCGGCATGCGGGGCTGTTGGC CAGCTTTTCATCTTCCACACTTTGTCTCGTTTCTCTTCACTGTTGCTTGTCACTGTCACCGTTACACGTAAGATG TTGACTATGCTCCTCAGCGTTTTCTGGTTCGGACATTCTCTGTCCCGTGGCCAGTGGCTGGGAATTAGTCTGGTC TTCGGCGGCATTGGCGCCGAAGCAGTGGTACAAAGATCAGAGAAGAAGGCGAAAGAGCAGTCGAAGATTGAGGCT GCAAAGAAGAAGTTGTGA |
| Gene | >Pro_DTO377G3_2|g4911.t1 ATGGGACGACAAAAGCAAGGCGCGCCGCTCAAGAGAGCCCCTTCTTCTCAATTAATGCACATCTCAGAAGAGTCC GACGTGGGACAGAATTCTGGAAACAATACAGACACAGTCTCGACCGCCAAGGGAAGCGTGTCCGAAAAAGCATCA GCGGCCCTGGAGACAGTCACCGACAGCCCTGGGCTGACGCAACTTGCGATTTGTGTTCTCGGTATATATGCGGCA TTGTAAGTGCCTCCACCGCTAGGACTGGCCGGAGAAATTAACAAGACGAAAAGCCTCTCGTGGGGTGTGCTACAG GAGGCGATCACGACAACCAGCTATCTCGTTCGTCCTGCAACCGTTGCGGAGCCAAACCCTCCAACGGAGCGATTC ACCTACTCGCTGGTGCTGAACACGGTCCAATCTCTCTTCGCGGCCATCACCGGCTTTGCATACCTACTATTCTCA ACACCGAGTGGCCAAAAAATTCCATCTATCTTCCCTACACGCCGGATCATCGTCCCCCTGCTTCTAGTTGCAATC TCCTCGTCACTTGCGTCACCCTTCGGCTACGCCAGTCTCGAACACATTGACTACCTGACCTTCATCCTCGCCAAG TCATGCAAGCTCCTCCCGGTGATGGTCTTGCACCTGACCATATTCCGCAAGAGATACCCACTGTACAAATACGGT GTTGTCCTGATGGTCACTCTCGGCGTCGCAACCTTCAGTCTGCACCACCCCGGAACTAGTAAGAAAGTCGCTGCC AAGGACCAGTCTGGATCCTCCGGCTGGGGCATCTTCTTGTTGTCAATCAACCTCCTTTTGGATGGCCTGACCAAC ACTACGCAAGACCACGTCTTCTCCTCGCCCAAGCTGTACACCCGCTTCACCGGACCCCAGATGATGGTCGCTCAG AATGTTCTCTCGACCGTTCTGACTTCTGCGTACCTCCTGATCATGCCGCATCTCTCACAGAGCGGGATTTTGCAC AACCTCCTGCCATTCCCCATTCCCCCGTCTAATGAGACTGAACTGTTTGGTGCCTTCTCCTTCCTCTCTCGCCAC CCAGAGGCACTGAAGCATGTCCTTGGGTTCGCGGCATGCGGGGCTGTTGGCCAGCTTTTCATCTTCCACACTTTG TCTCGTTTCTCTTCACTGTTGCTTGTCACTGTCACCGTTACACGTAAGATGTTGACTATGCTCCTCAGCGTTTTC TGGTTCGGACATTCTCTGTCCCGTGGCCAGTGGCTGGGAATTAGTCTGGTCTTCGGCGGCATTGGCGCCGAAGCA GTGGTACAAAGATCAGAGAAGAAGGCGAAAGAGCAGTCGAAGATTGAGGCTGCAAAGAAGAAGTTGTGA |