© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4909.t1 |
| Gene name | |
| Location | scaffold_11:36731..37680 |
| Strand | - |
| Gene length (bp) | 949 |
| Transcript length (bp) | 768 |
| Coding sequence length (bp) | 768 |
| Protein length (aa) | 256 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13532 | 2OG-FeII_Oxy_2 | 2OG-Fe(II) oxygenase superfamily | 5.4E-12 | 71 | 237 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 39 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 34.69 | 16.85 | 52.53 |
| 5d_25C | Five days - 25 degrees Celsius | 72.00 | 40.55 | 103.44 |
| 7d_25C | Seven days - 25 degrees Celsius | 70.56 | 39.62 | 101.51 |
| 10d_25C | Ten days - 25 degrees Celsius | 116.79 | 70.10 | 163.48 |
| 7d_15C | Seven days - 15 degrees Celsius | 66.95 | 37.21 | 96.69 |
| 7d_30C | Seven days - 30 degrees Celsius | 82.92 | 47.18 | 118.65 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.003197 | yes |
| 3d_25C | 7d_25C | 0.004840 | yes |
| 3d_25C | 7d_15C | 0.009770 | yes |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.959339 | no |
| 5d_25C | 7d_15C | 0.837304 | no |
| 5d_25C | 7d_30C | 0.641004 | no |
| 5d_25C | 10d_25C | 0.030863 | yes |
| 7d_25C | 7d_15C | 0.887156 | no |
| 7d_25C | 7d_30C | 0.581098 | no |
| 7d_25C | 10d_25C | 0.021921 | yes |
| 7d_15C | 7d_30C | 0.445279 | no |
| 7d_15C | 10d_25C | 0.012904 | yes |
| 7d_30C | 10d_25C | 0.143776 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4909.t1 MGFDLEKSRIIALPEDAFYISDFITEDEEDWLLQKVKSAPLPRWTQLSHRRLQTWPSALTKGNALLESPLPAWLR SPIVEPRFEALCIFNDAPHKAPNHVLVNEYQPGQGIMPHEDGAAYYPLVATVSLGAPIVLNLYHKHAQGDREENE APAKTGRDVAGIPDTNRRPQYRILQERRSLLITRGKMYTDFLHGIEETTRDEDLSSRSICNWELLREREAYQSGW YERKTRTSLTYRDVLQVVKMGNTLKFLSGR* |
| Coding | >Pro_DTO377G3_2|g4909.t1 ATGGGATTTGATCTTGAAAAGTCACGCATCATCGCATTGCCCGAGGATGCATTCTATATATCGGACTTCATTACA GAAGACGAGGAGGACTGGCTACTTCAGAAGGTAAAGTCAGCACCGCTGCCGCGCTGGACCCAACTCTCGCACCGC AGACTTCAAACATGGCCATCAGCCCTCACCAAGGGTAATGCTCTTCTCGAATCGCCCTTACCAGCTTGGCTTCGA TCACCGATCGTCGAGCCGCGGTTTGAGGCCCTGTGTATCTTTAATGATGCGCCACACAAGGCGCCCAATCATGTC CTAGTAAATGAGTACCAACCTGGACAGGGGATCATGCCACACGAAGATGGAGCTGCGTACTATCCCCTCGTTGCG ACAGTGAGTCTAGGGGCGCCAATTGTGCTCAATTTGTACCACAAACATGCCCAGGGGGACAGGGAAGAAAATGAG GCACCAGCCAAGACCGGAAGAGATGTTGCCGGGATACCCGACACAAACCGAAGGCCCCAATACAGGATTTTGCAG GAGAGACGGAGTCTCCTGATCACGAGGGGCAAGATGTACACAGACTTTTTACATGGCATCGAGGAAACGACGAGA GATGAGGATCTGAGCTCTCGCTCTATATGCAACTGGGAGCTCTTGCGAGAGAGGGAAGCGTACCAGAGCGGGTGG TATGAGCGGAAGACGAGGACTAGCCTTACATACAGGGATGTGCTTCAGGTTGTGAAGATGGGGAATACCTTGAAG TTTTTAAGTGGGAGGTAA |
| Transcript | >Pro_DTO377G3_2|g4909.t1 ATGGGATTTGATCTTGAAAAGTCACGCATCATCGCATTGCCCGAGGATGCATTCTATATATCGGACTTCATTACA GAAGACGAGGAGGACTGGCTACTTCAGAAGGTAAAGTCAGCACCGCTGCCGCGCTGGACCCAACTCTCGCACCGC AGACTTCAAACATGGCCATCAGCCCTCACCAAGGGTAATGCTCTTCTCGAATCGCCCTTACCAGCTTGGCTTCGA TCACCGATCGTCGAGCCGCGGTTTGAGGCCCTGTGTATCTTTAATGATGCGCCACACAAGGCGCCCAATCATGTC CTAGTAAATGAGTACCAACCTGGACAGGGGATCATGCCACACGAAGATGGAGCTGCGTACTATCCCCTCGTTGCG ACAGTGAGTCTAGGGGCGCCAATTGTGCTCAATTTGTACCACAAACATGCCCAGGGGGACAGGGAAGAAAATGAG GCACCAGCCAAGACCGGAAGAGATGTTGCCGGGATACCCGACACAAACCGAAGGCCCCAATACAGGATTTTGCAG GAGAGACGGAGTCTCCTGATCACGAGGGGCAAGATGTACACAGACTTTTTACATGGCATCGAGGAAACGACGAGA GATGAGGATCTGAGCTCTCGCTCTATATGCAACTGGGAGCTCTTGCGAGAGAGGGAAGCGTACCAGAGCGGGTGG TATGAGCGGAAGACGAGGACTAGCCTTACATACAGGGATGTGCTTCAGGTTGTGAAGATGGGGAATACCTTGAAG TTTTTAAGTGGGAGGTAA |
| Gene | >Pro_DTO377G3_2|g4909.t1 ATGGGATTTGATCTTGAAAAGTCACGCATCATCGCATTGCCCGAGGATGCATTCTATATATCGGACTTCATTACA GAAGACGAGGAGGACTGGCTACTTCAGAAGGTAAGTGACAGTGCTTTTCTTGTGAACATGTGTCCTTAGAAACCA TGCCCTAAGGGATTGATGTAAAATATTGCACTAATATATGTGGTTACCATTATGTCGTCTTTCTTCAATTATACC TATTTAGACGTTGCATGTCACTTATTCATGCTCAGATCTCACTCACTGCAACAATTCACAGGTAAAGTCAGCACC GCTGCCGCGCTGGACCCAACTCTCGCACCGCAGACTTCAAACATGGCCATCAGCCCTCACCAAGGGTAATGCTCT TCTCGAATCGCCCTTACCAGCTTGGCTTCGATCACCGATCGTCGAGCCGCGGTTTGAGGCCCTGTGTATCTTTAA TGATGCGCCACACAAGGCGCCCAATCATGTCCTAGTAAATGAGTACCAACCTGGACAGGGGATCATGCCACACGA AGATGGAGCTGCGTACTATCCCCTCGTTGCGACAGTGAGTCTAGGGGCGCCAATTGTGCTCAATTTGTACCACAA ACATGCCCAGGGGGACAGGGAAGAAAATGAGGCACCAGCCAAGACCGGAAGAGATGTTGCCGGGATACCCGACAC AAACCGAAGGCCCCAATACAGGATTTTGCAGGAGAGACGGAGTCTCCTGATCACGAGGGGCAAGATGTACACAGA CTTTTTACATGGCATCGAGGAAACGACGAGAGATGAGGATCTGAGCTCTCGCTCTATATGCAACTGGGAGCTCTT GCGAGAGAGGGAAGCGTACCAGAGCGGGTGGTATGAGCGGAAGACGAGGACTAGCCTTACATACAGGGATGTGCT TCAGGTTGTGAAGATGGGGAATACCTTGAAGTTTTTAAGTGGGAGGTAA |