Fungal Genomics

at Utrecht University

General Properties

Protein ID	Pro_DTO377G3_2\|g4890.t1
Gene name
Location	scaffold_10:685328..686369
Strand	+
Gene length (bp)	1041
Transcript length (bp)	1041
Coding sequence length (bp)	1041
Protein length (aa)	347

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00877	NLPC_P60	NlpC/P60 family	2.9E-18	231	326

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 21	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
3d_25C	Three days - 25 degrees Celsius	14.87	6.13	23.60
5d_25C	Five days - 25 degrees Celsius	11.07	3.98	18.15
7d_25C	Seven days - 25 degrees Celsius	9.73	3.39	16.06
10d_25C	Ten days - 25 degrees Celsius	5.25	1.35	9.15
7d_15C	Seven days - 15 degrees Celsius	7.70	2.43	12.97
7d_30C	Seven days - 30 degrees Celsius	13.83	5.41	22.24

Differential expression

Label1	Label2	Q-value	Significant difference
3d_25C	5d_25C	0.445676	no
3d_25C	7d_25C	0.232935	no
3d_25C	7d_15C	0.064497	no
3d_25C	7d_30C	0.884641	no
3d_25C	10d_25C	0.004045	yes
5d_25C	7d_25C	0.789706	no
5d_25C	7d_15C	0.366664	no
5d_25C	7d_30C	0.604444	no
5d_25C	10d_25C	0.045566	yes
7d_25C	7d_15C	0.601837	no
7d_25C	7d_30C	0.359519	no
7d_25C	10d_25C	0.101996	no
7d_15C	7d_30C	0.110283	no
7d_15C	10d_25C	0.378049	no
7d_30C	10d_25C	0.007779	yes

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Pro_DTO377G3_2\|g4890.t1 MISLLAKQVTLALVWGAANALPSSNASPILDTRSVQPAYVSVAVTTLWTDPSKPRAIDEPALTNPVQMDKWLSMN VSDYSDLTTNSRTQTQALFGARVDIIGHENGWYEVALPGQATPKNALGYPGWVPAAQVSFDQEYGRLLSEKPFAK VEKAATVPLYRDHSLKSKLMEVTYDTRLPVLRETKSAIEVATPGGGSAYLSTHDASVYKSASDIPYPTSLDLINT AKLFLGLPYLWGGMSGYAVDCSGFTHTLYHSHGIDIARDADAQADFTGHGTPVAQADLQPADLMFYASNLSDAST IYHVAMYIGNGEMVEAYDSGTPVRITPARFTDEYWGAERFLKHRKI*
Coding	>Pro_DTO377G3_2\|g4890.t1 ATGATTTCACTTCTTGCAAAACAAGTCACCCTGGCACTGGTCTGGGGTGCTGCCAACGCCCTTCCAAGCTCCAAT GCAAGCCCTATTCTCGACACCCGCTCCGTGCAGCCTGCCTACGTAAGTGTGGCAGTGACAACATTGTGGACCGAC CCCAGCAAGCCGCGCGCAATCGATGAGCCGGCACTGACAAACCCGGTGCAAATGGACAAATGGCTTTCTATGAAC GTGTCCGACTACAGCGACCTCACCACTAATAGCCGGACTCAGACGCAAGCGCTTTTTGGTGCACGAGTGGACATC ATCGGCCATGAGAATGGTTGGTACGAGGTGGCCCTCCCCGGACAGGCGACCCCAAAGAACGCCCTGGGATATCCC GGCTGGGTCCCTGCTGCGCAGGTATCGTTTGACCAGGAATACGGACGACTGCTCTCAGAAAAGCCCTTCGCGAAA GTCGAAAAGGCTGCCACGGTTCCGCTCTACCGCGATCATAGCCTGAAGTCGAAGCTAATGGAAGTCACCTACGAC ACAAGACTCCCCGTCCTGCGGGAGACAAAATCAGCCATTGAAGTCGCAACTCCCGGTGGTGGCTCGGCTTACTTG TCCACCCATGATGCTTCCGTCTACAAGTCTGCCTCGGATATTCCTTATCCGACGAGCCTTGACCTGATCAACACA GCGAAACTGTTCCTTGGCCTTCCTTATCTCTGGGGCGGTATGTCAGGATACGCCGTCGACTGCTCGGGATTCACG CACACCCTCTACCATTCGCATGGCATTGATATTGCTCGTGACGCTGACGCTCAAGCCGACTTCACTGGTCATGGC ACCCCTGTCGCGCAGGCGGATTTGCAACCCGCGGATCTCATGTTCTACGCGAGCAACCTCAGTGATGCAAGCACG ATTTATCACGTTGCGATGTATATCGGAAATGGAGAAATGGTCGAGGCATATGATTCTGGCACTCCAGTGAGAATC ACGCCTGCTCGCTTCACCGACGAGTACTGGGGAGCAGAGCGGTTCTTGAAGCACCGAAAGATCTGA
Transcript	>Pro_DTO377G3_2\|g4890.t1 ATGATTTCACTTCTTGCAAAACAAGTCACCCTGGCACTGGTCTGGGGTGCTGCCAACGCCCTTCCAAGCTCCAAT GCAAGCCCTATTCTCGACACCCGCTCCGTGCAGCCTGCCTACGTAAGTGTGGCAGTGACAACATTGTGGACCGAC CCCAGCAAGCCGCGCGCAATCGATGAGCCGGCACTGACAAACCCGGTGCAAATGGACAAATGGCTTTCTATGAAC GTGTCCGACTACAGCGACCTCACCACTAATAGCCGGACTCAGACGCAAGCGCTTTTTGGTGCACGAGTGGACATC ATCGGCCATGAGAATGGTTGGTACGAGGTGGCCCTCCCCGGACAGGCGACCCCAAAGAACGCCCTGGGATATCCC GGCTGGGTCCCTGCTGCGCAGGTATCGTTTGACCAGGAATACGGACGACTGCTCTCAGAAAAGCCCTTCGCGAAA GTCGAAAAGGCTGCCACGGTTCCGCTCTACCGCGATCATAGCCTGAAGTCGAAGCTAATGGAAGTCACCTACGAC ACAAGACTCCCCGTCCTGCGGGAGACAAAATCAGCCATTGAAGTCGCAACTCCCGGTGGTGGCTCGGCTTACTTG TCCACCCATGATGCTTCCGTCTACAAGTCTGCCTCGGATATTCCTTATCCGACGAGCCTTGACCTGATCAACACA GCGAAACTGTTCCTTGGCCTTCCTTATCTCTGGGGCGGTATGTCAGGATACGCCGTCGACTGCTCGGGATTCACG CACACCCTCTACCATTCGCATGGCATTGATATTGCTCGTGACGCTGACGCTCAAGCCGACTTCACTGGTCATGGC ACCCCTGTCGCGCAGGCGGATTTGCAACCCGCGGATCTCATGTTCTACGCGAGCAACCTCAGTGATGCAAGCACG ATTTATCACGTTGCGATGTATATCGGAAATGGAGAAATGGTCGAGGCATATGATTCTGGCACTCCAGTGAGAATC ACGCCTGCTCGCTTCACCGACGAGTACTGGGGAGCAGAGCGGTTCTTGAAGCACCGAAAGATCTGA
Gene	>Pro_DTO377G3_2\|g4890.t1 ATGATTTCACTTCTTGCAAAACAAGTCACCCTGGCACTGGTCTGGGGTGCTGCCAACGCCCTTCCAAGCTCCAAT GCAAGCCCTATTCTCGACACCCGCTCCGTGCAGCCTGCCTACGTAAGTGTGGCAGTGACAACATTGTGGACCGAC CCCAGCAAGCCGCGCGCAATCGATGAGCCGGCACTGACAAACCCGGTGCAAATGGACAAATGGCTTTCTATGAAC GTGTCCGACTACAGCGACCTCACCACTAATAGCCGGACTCAGACGCAAGCGCTTTTTGGTGCACGAGTGGACATC ATCGGCCATGAGAATGGTTGGTACGAGGTGGCCCTCCCCGGACAGGCGACCCCAAAGAACGCCCTGGGATATCCC GGCTGGGTCCCTGCTGCGCAGGTATCGTTTGACCAGGAATACGGACGACTGCTCTCAGAAAAGCCCTTCGCGAAA GTCGAAAAGGCTGCCACGGTTCCGCTCTACCGCGATCATAGCCTGAAGTCGAAGCTAATGGAAGTCACCTACGAC ACAAGACTCCCCGTCCTGCGGGAGACAAAATCAGCCATTGAAGTCGCAACTCCCGGTGGTGGCTCGGCTTACTTG TCCACCCATGATGCTTCCGTCTACAAGTCTGCCTCGGATATTCCTTATCCGACGAGCCTTGACCTGATCAACACA GCGAAACTGTTCCTTGGCCTTCCTTATCTCTGGGGCGGTATGTCAGGATACGCCGTCGACTGCTCGGGATTCACG CACACCCTCTACCATTCGCATGGCATTGATATTGCTCGTGACGCTGACGCTCAAGCCGACTTCACTGGTCATGGC ACCCCTGTCGCGCAGGCGGATTTGCAACCCGCGGATCTCATGTTCTACGCGAGCAACCTCAGTGATGCAAGCACG ATTTATCACGTTGCGATGTATATCGGAAATGGAGAAATGGTCGAGGCATATGATTCTGGCACTCCAGTGAGAATC ACGCCTGCTCGCTTCACCGACGAGTACTGGGGAGCAGAGCGGTTCTTGAAGCACCGAAAGATCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail