© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4887.t1 |
| Gene name | |
| Location | scaffold_10:673260..674479 |
| Strand | - |
| Gene length (bp) | 1219 |
| Transcript length (bp) | 1164 |
| Coding sequence length (bp) | 1164 |
| Protein length (aa) | 388 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01476 | LysM | LysM domain | 1.2E-05 | 49 | 75 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 19 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 0.26 | 0.0 | 0.68 |
| 5d_25C | Five days - 25 degrees Celsius | 0.52 | 0.0 | 1.19 |
| 7d_25C | Seven days - 25 degrees Celsius | 1.15 | 0.0 | 2.30 |
| 10d_25C | Ten days - 25 degrees Celsius | 1.43 | 0.0 | 2.87 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.39 | 0.0 | 0.95 |
| 7d_30C | Seven days - 30 degrees Celsius | 1.02 | 0.0 | 2.13 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 1.000000 | no |
| 3d_25C | 7d_25C | 0.083385 | no |
| 3d_25C | 7d_15C | 1.000000 | no |
| 3d_25C | 7d_30C | 0.112170 | no |
| 3d_25C | 10d_25C | 0.055491 | no |
| 5d_25C | 7d_25C | 0.238276 | no |
| 5d_25C | 7d_15C | 1.000000 | no |
| 5d_25C | 7d_30C | 0.361976 | no |
| 5d_25C | 10d_25C | 0.126468 | no |
| 7d_25C | 7d_15C | 0.148643 | no |
| 7d_25C | 7d_30C | 0.894076 | no |
| 7d_25C | 10d_25C | 0.781054 | no |
| 7d_15C | 7d_30C | 0.224716 | no |
| 7d_15C | 10d_25C | 0.088306 | no |
| 7d_30C | 10d_25C | 0.656255 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4887.t1 MYFIHILLSLVSVHIATAQSGHGSGDSHGHSLNKRSSFAPGSDGICYTYTIQQGDTCAALAKRYQLTTSNIETWN VGAWDWTGCGNVKQGSFVCLSSGALPMPVALPHAVCGPQVPGTRRPANYADLASLNQCSSNQCCSKFGQCGTSSD YCDASSGCLFNCGPKSTQKEVTTKSATSKATTLKTSTTKTTTKPTTSKSTTTSKSTTTSKSTTTSKSTTTSKSTT SKTTTEKVNMVTMTSIEVVTKTTSSVAPSATWQMTIYEGAGCTGDYFSLQGHETQDTENCIILADNTDTTISNTT TSCRWWTNGGLNWGTCASSKVTKPKSLYLTRGKCYMYSGSKCVDEDWIGETYAAFKGCQDDKTGYLSPRKRQAWG SLKCFEYISGSI* |
| Coding | >Pro_DTO377G3_2|g4887.t1 ATGTATTTCATTCATATCCTCCTCTCTCTTGTGTCTGTCCACATAGCAACTGCCCAATCCGGGCATGGCTCTGGC GACTCTCATGGCCATTCACTCAATAAACGCAGTTCATTTGCGCCTGGCAGCGATGGTATCTGCTATACCTATACC ATTCAGCAGGGTGATACCTGCGCAGCTCTTGCTAAGCGCTACCAGCTCACTACCAGCAATATCGAAACTTGGAAT GTCGGAGCCTGGGACTGGACAGGTTGTGGCAATGTGAAGCAAGGCAGTTTTGTTTGTCTCAGCTCCGGTGCCCTT CCTATGCCGGTTGCTCTCCCGCATGCTGTCTGCGGTCCTCAGGTTCCCGGGACAAGACGCCCTGCCAACTATGCC GATCTCGCCTCTCTAAACCAGTGCTCTTCGAATCAATGTTGTTCTAAGTTTGGTCAGTGTGGCACTAGCTCGGAT TATTGCGATGCTAGCAGCGGTTGCTTGTTCAATTGTGGACCGAAGAGTACCCAAAAGGAAGTCACAACCAAAAGT GCTACTTCGAAGGCGACTACTTTAAAGACTTCTACTACGAAAACCACTACCAAGCCCACTACTTCTAAATCTACC ACTACTTCCAAATCGACCACTACTTCCAAATCTACCACTACTTCCAAATCTACCACTACTTCCAAATCGACTACT TCAAAGACTACTACTGAGAAGGTGAACATGGTAACCATGACTAGCATAGAAGTGGTAACAAAAACCACGAGCAGT GTCGCTCCGTCTGCGACTTGGCAAATGACAATATACGAAGGTGCTGGTTGTACAGGCGATTACTTCTCTCTTCAA GGACACGAAACTCAAGATACTGAGAATTGTATCATTCTCGCTGACAATACCGACACCACAATATCGAATACAACC ACGTCCTGTCGATGGTGGACTAACGGTGGTCTCAACTGGGGCACCTGTGCTTCCAGTAAAGTGACAAAGCCTAAG TCATTGTATCTCACACGTGGCAAGTGTTATATGTATTCGGGTTCGAAATGTGTGGATGAGGACTGGATAGGAGAG ACCTATGCGGCTTTTAAGGGCTGTCAGGATGACAAGACTGGATACTTGTCTCCCAGGAAACGCCAAGCCTGGGGC TCGTTGAAGTGTTTCGAGTACATATCAGGTAGCATTTAG |
| Transcript | >Pro_DTO377G3_2|g4887.t1 ATGTATTTCATTCATATCCTCCTCTCTCTTGTGTCTGTCCACATAGCAACTGCCCAATCCGGGCATGGCTCTGGC GACTCTCATGGCCATTCACTCAATAAACGCAGTTCATTTGCGCCTGGCAGCGATGGTATCTGCTATACCTATACC ATTCAGCAGGGTGATACCTGCGCAGCTCTTGCTAAGCGCTACCAGCTCACTACCAGCAATATCGAAACTTGGAAT GTCGGAGCCTGGGACTGGACAGGTTGTGGCAATGTGAAGCAAGGCAGTTTTGTTTGTCTCAGCTCCGGTGCCCTT CCTATGCCGGTTGCTCTCCCGCATGCTGTCTGCGGTCCTCAGGTTCCCGGGACAAGACGCCCTGCCAACTATGCC GATCTCGCCTCTCTAAACCAGTGCTCTTCGAATCAATGTTGTTCTAAGTTTGGTCAGTGTGGCACTAGCTCGGAT TATTGCGATGCTAGCAGCGGTTGCTTGTTCAATTGTGGACCGAAGAGTACCCAAAAGGAAGTCACAACCAAAAGT GCTACTTCGAAGGCGACTACTTTAAAGACTTCTACTACGAAAACCACTACCAAGCCCACTACTTCTAAATCTACC ACTACTTCCAAATCGACCACTACTTCCAAATCTACCACTACTTCCAAATCTACCACTACTTCCAAATCGACTACT TCAAAGACTACTACTGAGAAGGTGAACATGGTAACCATGACTAGCATAGAAGTGGTAACAAAAACCACGAGCAGT GTCGCTCCGTCTGCGACTTGGCAAATGACAATATACGAAGGTGCTGGTTGTACAGGCGATTACTTCTCTCTTCAA GGACACGAAACTCAAGATACTGAGAATTGTATCATTCTCGCTGACAATACCGACACCACAATATCGAATACAACC ACGTCCTGTCGATGGTGGACTAACGGTGGTCTCAACTGGGGCACCTGTGCTTCCAGTAAAGTGACAAAGCCTAAG TCATTGTATCTCACACGTGGCAAGTGTTATATGTATTCGGGTTCGAAATGTGTGGATGAGGACTGGATAGGAGAG ACCTATGCGGCTTTTAAGGGCTGTCAGGATGACAAGACTGGATACTTGTCTCCCAGGAAACGCCAAGCCTGGGGC TCGTTGAAGTGTTTCGAGTACATATCAGGTAGCATTTAG |
| Gene | >Pro_DTO377G3_2|g4887.t1 ATGTATTTCATTCATATCCTCCTCTCTCTTGTGTCTGTCCACATAGCAACTGCCCAATCCGGGCATGGCTCTGGC GACTCTCATGGCCATTCACTCAATAAACGCAGTTCATTTGCGCCTGGCAGCGATGGTATCTGCTATACCTATACC ATTCAGCAGGGTGATACCTGCGCAGCTCTTGCTAAGCGCTACCAGCTCACTACCAGCAATATCGAAACTTGGAAT GTCGGAGCCTGGGACTGGACAGGTTGTGGCAATGTGAAGCAAGGCAGTTTTGTTTGTCTCAGCTCCGGTGCCCTT CCTATGCCGGTTGCTCTCCCGCATGCTGTCTGCGGTCCTCAGGTTCCCGGGACAAGACGCCCTGCCAACTATGCC GATCTCGCCTCTCTAAACCAGTGCTCTTCGAATCAATGTGTGGGTTTATTGTCGGAATTGCCCATCTTGCTGACT CTACTAATTATATCTCCAGTGTTCTAAGTTTGGTCAGTGTGGCACTAGCTCGGATTATTGCGATGCTAGCAGCGG TTGCTTGTTCAATTGTGGACCGAAGAGTACCCAAAAGGAAGTCACAACCAAAAGTGCTACTTCGAAGGCGACTAC TTTAAAGACTTCTACTACGAAAACCACTACCAAGCCCACTACTTCTAAATCTACCACTACTTCCAAATCGACCAC TACTTCCAAATCTACCACTACTTCCAAATCTACCACTACTTCCAAATCGACTACTTCAAAGACTACTACTGAGAA GGTGAACATGGTAACCATGACTAGCATAGAAGTGGTAACAAAAACCACGAGCAGTGTCGCTCCGTCTGCGACTTG GCAAATGACAATATACGAAGGTGCTGGTTGTACAGGCGATTACTTCTCTCTTCAAGGACACGAAACTCAAGATAC TGAGAATTGTATCATTCTCGCTGACAATACCGACACCACAATATCGAATACAACCACGTCCTGTCGATGGTGGAC TAACGGTGGTCTCAACTGGGGCACCTGTGCTTCCAGTAAAGTGACAAAGCCTAAGTCATTGTATCTCACACGTGG CAAGTGTTATATGTATTCGGGTTCGAAATGTGTGGATGAGGACTGGATAGGAGAGACCTATGCGGCTTTTAAGGG CTGTCAGGATGACAAGACTGGATACTTGTCTCCCAGGAAACGCCAAGCCTGGGGCTCGTTGAAGTGTTTCGAGTA CATATCAGGTAGCATTTAG |