Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g4887.t1
Gene name
Locationscaffold_10:673260..674479
Strand-
Gene length (bp)1219
Transcript length (bp)1164
Coding sequence length (bp)1164
Protein length (aa) 388

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01476 LysM LysM domain 1.2E-05 49 75

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
Yes 1 - 19 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g4887.t1
MYFIHILLSLVSVHIATAQSGHGSGDSHGHSLNKRSSFAPGSDGICYTYTIQQGDTCAALAKRYQLTTSNIETWN
VGAWDWTGCGNVKQGSFVCLSSGALPMPVALPHAVCGPQVPGTRRPANYADLASLNQCSSNQCCSKFGQCGTSSD
YCDASSGCLFNCGPKSTQKEVTTKSATSKATTLKTSTTKTTTKPTTSKSTTTSKSTTTSKSTTTSKSTTTSKSTT
SKTTTEKVNMVTMTSIEVVTKTTSSVAPSATWQMTIYEGAGCTGDYFSLQGHETQDTENCIILADNTDTTISNTT
TSCRWWTNGGLNWGTCASSKVTKPKSLYLTRGKCYMYSGSKCVDEDWIGETYAAFKGCQDDKTGYLSPRKRQAWG
SLKCFEYISGSI*
Coding >Pro_DTO377G3_2|g4887.t1
ATGTATTTCATTCATATCCTCCTCTCTCTTGTGTCTGTCCACATAGCAACTGCCCAATCCGGGCATGGCTCTGGC
GACTCTCATGGCCATTCACTCAATAAACGCAGTTCATTTGCGCCTGGCAGCGATGGTATCTGCTATACCTATACC
ATTCAGCAGGGTGATACCTGCGCAGCTCTTGCTAAGCGCTACCAGCTCACTACCAGCAATATCGAAACTTGGAAT
GTCGGAGCCTGGGACTGGACAGGTTGTGGCAATGTGAAGCAAGGCAGTTTTGTTTGTCTCAGCTCCGGTGCCCTT
CCTATGCCGGTTGCTCTCCCGCATGCTGTCTGCGGTCCTCAGGTTCCCGGGACAAGACGCCCTGCCAACTATGCC
GATCTCGCCTCTCTAAACCAGTGCTCTTCGAATCAATGTTGTTCTAAGTTTGGTCAGTGTGGCACTAGCTCGGAT
TATTGCGATGCTAGCAGCGGTTGCTTGTTCAATTGTGGACCGAAGAGTACCCAAAAGGAAGTCACAACCAAAAGT
GCTACTTCGAAGGCGACTACTTTAAAGACTTCTACTACGAAAACCACTACCAAGCCCACTACTTCTAAATCTACC
ACTACTTCCAAATCGACCACTACTTCCAAATCTACCACTACTTCCAAATCTACCACTACTTCCAAATCGACTACT
TCAAAGACTACTACTGAGAAGGTGAACATGGTAACCATGACTAGCATAGAAGTGGTAACAAAAACCACGAGCAGT
GTCGCTCCGTCTGCGACTTGGCAAATGACAATATACGAAGGTGCTGGTTGTACAGGCGATTACTTCTCTCTTCAA
GGACACGAAACTCAAGATACTGAGAATTGTATCATTCTCGCTGACAATACCGACACCACAATATCGAATACAACC
ACGTCCTGTCGATGGTGGACTAACGGTGGTCTCAACTGGGGCACCTGTGCTTCCAGTAAAGTGACAAAGCCTAAG
TCATTGTATCTCACACGTGGCAAGTGTTATATGTATTCGGGTTCGAAATGTGTGGATGAGGACTGGATAGGAGAG
ACCTATGCGGCTTTTAAGGGCTGTCAGGATGACAAGACTGGATACTTGTCTCCCAGGAAACGCCAAGCCTGGGGC
TCGTTGAAGTGTTTCGAGTACATATCAGGTAGCATTTAG
Transcript >Pro_DTO377G3_2|g4887.t1
ATGTATTTCATTCATATCCTCCTCTCTCTTGTGTCTGTCCACATAGCAACTGCCCAATCCGGGCATGGCTCTGGC
GACTCTCATGGCCATTCACTCAATAAACGCAGTTCATTTGCGCCTGGCAGCGATGGTATCTGCTATACCTATACC
ATTCAGCAGGGTGATACCTGCGCAGCTCTTGCTAAGCGCTACCAGCTCACTACCAGCAATATCGAAACTTGGAAT
GTCGGAGCCTGGGACTGGACAGGTTGTGGCAATGTGAAGCAAGGCAGTTTTGTTTGTCTCAGCTCCGGTGCCCTT
CCTATGCCGGTTGCTCTCCCGCATGCTGTCTGCGGTCCTCAGGTTCCCGGGACAAGACGCCCTGCCAACTATGCC
GATCTCGCCTCTCTAAACCAGTGCTCTTCGAATCAATGTTGTTCTAAGTTTGGTCAGTGTGGCACTAGCTCGGAT
TATTGCGATGCTAGCAGCGGTTGCTTGTTCAATTGTGGACCGAAGAGTACCCAAAAGGAAGTCACAACCAAAAGT
GCTACTTCGAAGGCGACTACTTTAAAGACTTCTACTACGAAAACCACTACCAAGCCCACTACTTCTAAATCTACC
ACTACTTCCAAATCGACCACTACTTCCAAATCTACCACTACTTCCAAATCTACCACTACTTCCAAATCGACTACT
TCAAAGACTACTACTGAGAAGGTGAACATGGTAACCATGACTAGCATAGAAGTGGTAACAAAAACCACGAGCAGT
GTCGCTCCGTCTGCGACTTGGCAAATGACAATATACGAAGGTGCTGGTTGTACAGGCGATTACTTCTCTCTTCAA
GGACACGAAACTCAAGATACTGAGAATTGTATCATTCTCGCTGACAATACCGACACCACAATATCGAATACAACC
ACGTCCTGTCGATGGTGGACTAACGGTGGTCTCAACTGGGGCACCTGTGCTTCCAGTAAAGTGACAAAGCCTAAG
TCATTGTATCTCACACGTGGCAAGTGTTATATGTATTCGGGTTCGAAATGTGTGGATGAGGACTGGATAGGAGAG
ACCTATGCGGCTTTTAAGGGCTGTCAGGATGACAAGACTGGATACTTGTCTCCCAGGAAACGCCAAGCCTGGGGC
TCGTTGAAGTGTTTCGAGTACATATCAGGTAGCATTTAG
Gene >Pro_DTO377G3_2|g4887.t1
ATGTATTTCATTCATATCCTCCTCTCTCTTGTGTCTGTCCACATAGCAACTGCCCAATCCGGGCATGGCTCTGGC
GACTCTCATGGCCATTCACTCAATAAACGCAGTTCATTTGCGCCTGGCAGCGATGGTATCTGCTATACCTATACC
ATTCAGCAGGGTGATACCTGCGCAGCTCTTGCTAAGCGCTACCAGCTCACTACCAGCAATATCGAAACTTGGAAT
GTCGGAGCCTGGGACTGGACAGGTTGTGGCAATGTGAAGCAAGGCAGTTTTGTTTGTCTCAGCTCCGGTGCCCTT
CCTATGCCGGTTGCTCTCCCGCATGCTGTCTGCGGTCCTCAGGTTCCCGGGACAAGACGCCCTGCCAACTATGCC
GATCTCGCCTCTCTAAACCAGTGCTCTTCGAATCAATGTGTGGGTTTATTGTCGGAATTGCCCATCTTGCTGACT
CTACTAATTATATCTCCAGTGTTCTAAGTTTGGTCAGTGTGGCACTAGCTCGGATTATTGCGATGCTAGCAGCGG
TTGCTTGTTCAATTGTGGACCGAAGAGTACCCAAAAGGAAGTCACAACCAAAAGTGCTACTTCGAAGGCGACTAC
TTTAAAGACTTCTACTACGAAAACCACTACCAAGCCCACTACTTCTAAATCTACCACTACTTCCAAATCGACCAC
TACTTCCAAATCTACCACTACTTCCAAATCTACCACTACTTCCAAATCGACTACTTCAAAGACTACTACTGAGAA
GGTGAACATGGTAACCATGACTAGCATAGAAGTGGTAACAAAAACCACGAGCAGTGTCGCTCCGTCTGCGACTTG
GCAAATGACAATATACGAAGGTGCTGGTTGTACAGGCGATTACTTCTCTCTTCAAGGACACGAAACTCAAGATAC
TGAGAATTGTATCATTCTCGCTGACAATACCGACACCACAATATCGAATACAACCACGTCCTGTCGATGGTGGAC
TAACGGTGGTCTCAACTGGGGCACCTGTGCTTCCAGTAAAGTGACAAAGCCTAAGTCATTGTATCTCACACGTGG
CAAGTGTTATATGTATTCGGGTTCGAAATGTGTGGATGAGGACTGGATAGGAGAGACCTATGCGGCTTTTAAGGG
CTGTCAGGATGACAAGACTGGATACTTGTCTCCCAGGAAACGCCAAGCCTGGGGCTCGTTGAAGTGTTTCGAGTA
CATATCAGGTAGCATTTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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