© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4880.t1 |
| Gene name | |
| Location | scaffold_10:629379..631807 |
| Strand | + |
| Gene length (bp) | 2428 |
| Transcript length (bp) | 2124 |
| Coding sequence length (bp) | 2124 |
| Protein length (aa) | 708 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF10300 | Iml2-TPR_39 | Iml2/Tetratricopeptide repeat protein 39 | 1.2E-166 | 31 | 583 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 271 | 293 | 22 |
| 2 | 313 | 330 | 17 |
| Gene cluster ID | Type of secondary metabolism gene |
|---|---|
| Cluster 14 | (None) |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 164.99 | 98.00 | 231.97 |
| 5d_25C | Five days - 25 degrees Celsius | 217.68 | 126.10 | 309.26 |
| 7d_25C | Seven days - 25 degrees Celsius | 231.97 | 134.43 | 329.51 |
| 10d_25C | Ten days - 25 degrees Celsius | 308.81 | 172.72 | 444.90 |
| 7d_15C | Seven days - 15 degrees Celsius | 205.95 | 117.96 | 293.94 |
| 7d_30C | Seven days - 30 degrees Celsius | 168.77 | 96.90 | 240.64 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.255009 | no |
| 3d_25C | 7d_25C | 0.143169 | no |
| 3d_25C | 7d_15C | 0.378263 | no |
| 3d_25C | 7d_30C | 0.950527 | no |
| 3d_25C | 10d_25C | 0.006371 | yes |
| 5d_25C | 7d_25C | 0.854484 | no |
| 5d_25C | 7d_15C | 0.870809 | no |
| 5d_25C | 7d_30C | 0.317104 | no |
| 5d_25C | 10d_25C | 0.159527 | no |
| 7d_25C | 7d_15C | 0.690387 | no |
| 7d_25C | 7d_30C | 0.185522 | no |
| 7d_25C | 10d_25C | 0.263965 | no |
| 7d_15C | 7d_30C | 0.458338 | no |
| 7d_15C | 10d_25C | 0.089754 | no |
| 7d_30C | 10d_25C | 0.007779 | yes |
| Orthofinder run ID | 2 |
| Orthogroup | 6378 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4880.t1 MLRVGSWLYGKKPAQSVDSKVELKDLHDALTAATLILNDDVDGAESGLSTGTSSFHNLGKGVVAFVRATLGFEQE IMRQASERLYEAETSAANDQTRSQQNAQAPNAFHSDIYAAGTEYALCQAIAQLMSAVVGVLNESLTESIKAFYRL RKAYIALDAIMKMEEKFMEQRDIRKVLRPTASDLSSSSAACPDTKSESSSLLSKKSAKMANIEKSELNSSMNSLA ISSRAVSPDVSTPSTLAKHIHQDPDSDIFKNEIDVFVHSGSNFCFGILLLLISMVPPAFSKLLSIIGFHGDKQRG LRMLWQASKFHNLIGAMAALALLGYYNGFVRYCDIMPDPTPGGSDVEGYPQERLAALLAEMRFRFPNSQLWLLEE SRMLGANKKLDSALEVLSTDKKSPLKQVEGLCVFEKSLNALFLHRYNVCAEAFIECVELNTWSRSLYYYIAGSCH VVLYRQSLDDPKLAAEHAKKATMYMRKAPEFAGKKRFMARQLPFDIFVTRKIAKWEARAKEWNVSLVDAIGVDPV EEMIFFWNGHSRMTNEQLQESLTRLEWCESEKNKMWSREGSEEKAILELLRAAVFRSLYRHEEAKKILLTCVLNH EKSVFKGHLKDDWVHPVAHFEMAANLWMQRPTYQALHGITSPEASEEASAESRETNIEIERKQVSECKGYLDFAA RWESYELDARIGLKVTAAMEAINKWQSIHAEV* |
| Coding | >Pro_DTO377G3_2|g4880.t1 ATGTTGCGTGTCGGGTCCTGGTTGTACGGCAAGAAGCCGGCGCAGTCTGTGGACTCAAAGGTTGAGTTGAAAGAC TTGCATGATGCGCTGACAGCTGCAACGCTGATTCTCAATGATGATGTTGATGGCGCAGAGAGTGGTCTCTCCACG GGAACTTCATCCTTTCACAATCTGGGTAAAGGCGTGGTCGCGTTTGTCCGGGCAACATTAGGGTTCGAGCAGGAG ATTATGCGACAAGCATCCGAGCGCCTCTATGAAGCAGAAACCAGCGCGGCCAACGATCAAACCCGGTCCCAGCAA AACGCCCAAGCACCCAATGCTTTTCACTCCGATATCTATGCTGCCGGTACCGAATACGCGTTGTGCCAAGCAATC GCCCAATTGATGAGTGCAGTGGTTGGGGTGCTGAATGAAAGCCTGACAGAAAGTATCAAAGCGTTCTACCGACTG AGGAAGGCTTATATCGCACTCGATGCGATCATGAAGATGGAAGAGAAGTTTATGGAGCAGAGGGATATACGCAAA GTTTTACGGCCCACTGCGAGTGATCTCTCAAGCTCGAGCGCTGCATGCCCAGACACGAAGTCGGAGTCGTCCAGT CTTCTATCGAAAAAGAGCGCGAAAATGGCTAACATCGAGAAATCCGAGCTTAATTCCTCAATGAATTCACTGGCG ATCTCATCCAGGGCGGTATCTCCAGATGTTTCAACTCCTTCCACACTTGCGAAGCATATCCACCAAGACCCCGAC TCGGATATCTTCAAGAATGAAATCGATGTTTTTGTGCACTCTGGTTCCAATTTCTGCTTTGGTATTCTTCTTCTA CTGATCTCTATGGTTCCACCGGCGTTCAGCAAACTTCTTTCCATTATTGGCTTCCACGGTGACAAGCAACGAGGG CTGAGAATGCTCTGGCAAGCCAGCAAGTTCCACAACCTTATCGGTGCCATGGCTGCTTTGGCACTGCTGGGGTAT TACAATGGCTTTGTCCGCTACTGCGATATTATGCCCGACCCAACTCCTGGTGGATCCGACGTTGAGGGATACCCG CAGGAGAGGCTGGCTGCGTTGCTGGCGGAGATGCGGTTCCGGTTCCCCAACAGTCAACTTTGGCTGCTCGAAGAA TCGCGGATGTTAGGCGCGAACAAAAAGCTGGACAGTGCTCTGGAAGTGTTGTCCACGGACAAGAAGAGCCCGCTC AAGCAGGTAGAGGGGTTGTGCGTGTTTGAGAAGAGCTTGAACGCATTGTTTCTCCACAGATATAATGTCTGTGCT GAAGCATTCATTGAGTGCGTGGAACTCAATACGTGGTCTCGTTCATTGTATTACTACATTGCCGGATCGTGTCAT GTTGTCCTGTACCGGCAATCACTCGACGACCCAAAGCTTGCAGCGGAACATGCTAAAAAAGCCACCATGTACATG CGGAAGGCACCCGAATTCGCGGGGAAAAAGCGATTTATGGCCCGACAACTGCCGTTTGATATCTTTGTGACTCGG AAAATTGCCAAATGGGAGGCGCGCGCCAAAGAATGGAACGTATCTCTGGTGGATGCGATTGGAGTGGACCCGGTT GAAGAAATGATCTTTTTCTGGAACGGACACAGTCGCATGACCAACGAGCAACTGCAGGAGTCTTTGACCCGGCTG GAATGGTGCGAAAGCGAAAAGAACAAGATGTGGTCTCGTGAGGGAAGCGAAGAAAAGGCGATCCTGGAGCTTCTC CGGGCTGCTGTTTTTCGATCCCTGTACAGACACGAAGAGGCGAAAAAGATCCTTTTGACCTGCGTCTTGAACCAC GAGAAGTCTGTATTCAAGGGCCACCTGAAGGATGACTGGGTCCACCCAGTGGCGCATTTCGAAATGGCCGCCAAC CTCTGGATGCAGCGTCCTACATACCAGGCCCTGCATGGGATTACTTCCCCCGAGGCGTCGGAGGAAGCGTCCGCG GAATCTAGGGAGACGAACATAGAGATCGAGAGGAAGCAGGTATCCGAGTGCAAGGGATACCTCGACTTCGCTGCT CGCTGGGAGAGCTATGAGCTCGACGCTCGTATTGGACTCAAGGTTACTGCGGCGATGGAAGCAATTAACAAGTGG CAGAGCATTCATGCGGAAGTCTAA |
| Transcript | >Pro_DTO377G3_2|g4880.t1 ATGTTGCGTGTCGGGTCCTGGTTGTACGGCAAGAAGCCGGCGCAGTCTGTGGACTCAAAGGTTGAGTTGAAAGAC TTGCATGATGCGCTGACAGCTGCAACGCTGATTCTCAATGATGATGTTGATGGCGCAGAGAGTGGTCTCTCCACG GGAACTTCATCCTTTCACAATCTGGGTAAAGGCGTGGTCGCGTTTGTCCGGGCAACATTAGGGTTCGAGCAGGAG ATTATGCGACAAGCATCCGAGCGCCTCTATGAAGCAGAAACCAGCGCGGCCAACGATCAAACCCGGTCCCAGCAA AACGCCCAAGCACCCAATGCTTTTCACTCCGATATCTATGCTGCCGGTACCGAATACGCGTTGTGCCAAGCAATC GCCCAATTGATGAGTGCAGTGGTTGGGGTGCTGAATGAAAGCCTGACAGAAAGTATCAAAGCGTTCTACCGACTG AGGAAGGCTTATATCGCACTCGATGCGATCATGAAGATGGAAGAGAAGTTTATGGAGCAGAGGGATATACGCAAA GTTTTACGGCCCACTGCGAGTGATCTCTCAAGCTCGAGCGCTGCATGCCCAGACACGAAGTCGGAGTCGTCCAGT CTTCTATCGAAAAAGAGCGCGAAAATGGCTAACATCGAGAAATCCGAGCTTAATTCCTCAATGAATTCACTGGCG ATCTCATCCAGGGCGGTATCTCCAGATGTTTCAACTCCTTCCACACTTGCGAAGCATATCCACCAAGACCCCGAC TCGGATATCTTCAAGAATGAAATCGATGTTTTTGTGCACTCTGGTTCCAATTTCTGCTTTGGTATTCTTCTTCTA CTGATCTCTATGGTTCCACCGGCGTTCAGCAAACTTCTTTCCATTATTGGCTTCCACGGTGACAAGCAACGAGGG CTGAGAATGCTCTGGCAAGCCAGCAAGTTCCACAACCTTATCGGTGCCATGGCTGCTTTGGCACTGCTGGGGTAT TACAATGGCTTTGTCCGCTACTGCGATATTATGCCCGACCCAACTCCTGGTGGATCCGACGTTGAGGGATACCCG CAGGAGAGGCTGGCTGCGTTGCTGGCGGAGATGCGGTTCCGGTTCCCCAACAGTCAACTTTGGCTGCTCGAAGAA TCGCGGATGTTAGGCGCGAACAAAAAGCTGGACAGTGCTCTGGAAGTGTTGTCCACGGACAAGAAGAGCCCGCTC AAGCAGGTAGAGGGGTTGTGCGTGTTTGAGAAGAGCTTGAACGCATTGTTTCTCCACAGATATAATGTCTGTGCT GAAGCATTCATTGAGTGCGTGGAACTCAATACGTGGTCTCGTTCATTGTATTACTACATTGCCGGATCGTGTCAT GTTGTCCTGTACCGGCAATCACTCGACGACCCAAAGCTTGCAGCGGAACATGCTAAAAAAGCCACCATGTACATG CGGAAGGCACCCGAATTCGCGGGGAAAAAGCGATTTATGGCCCGACAACTGCCGTTTGATATCTTTGTGACTCGG AAAATTGCCAAATGGGAGGCGCGCGCCAAAGAATGGAACGTATCTCTGGTGGATGCGATTGGAGTGGACCCGGTT GAAGAAATGATCTTTTTCTGGAACGGACACAGTCGCATGACCAACGAGCAACTGCAGGAGTCTTTGACCCGGCTG GAATGGTGCGAAAGCGAAAAGAACAAGATGTGGTCTCGTGAGGGAAGCGAAGAAAAGGCGATCCTGGAGCTTCTC CGGGCTGCTGTTTTTCGATCCCTGTACAGACACGAAGAGGCGAAAAAGATCCTTTTGACCTGCGTCTTGAACCAC GAGAAGTCTGTATTCAAGGGCCACCTGAAGGATGACTGGGTCCACCCAGTGGCGCATTTCGAAATGGCCGCCAAC CTCTGGATGCAGCGTCCTACATACCAGGCCCTGCATGGGATTACTTCCCCCGAGGCGTCGGAGGAAGCGTCCGCG GAATCTAGGGAGACGAACATAGAGATCGAGAGGAAGCAGGTATCCGAGTGCAAGGGATACCTCGACTTCGCTGCT CGCTGGGAGAGCTATGAGCTCGACGCTCGTATTGGACTCAAGGTTACTGCGGCGATGGAAGCAATTAACAAGTGG CAGAGCATTCATGCGGAAGTCTAA |
| Gene | >Pro_DTO377G3_2|g4880.t1 ATGTTGCGTGTCGGGTCCTGGTTGTACGGCAAGAAGCCGGCGCAGTCTGTGGACTCAAAGGTTGAGTTGAAAGAC TGTGAGTGGCGATACACTCTAGGAAAGCCATGATGATTATTATGTTGCATACTGACCGCCCTCTTCTGAGCTAGT GCATGATGCGCTGACAGGTATGTCTTATGGGAAATGTGCGCCCCTTTAGATACCGACTAATGCGATGAAACTAGC TGCAACGCTGATTCTCAATGATGATGTTGATGGCGCAGAGAGTGGTCTCTCCACGGGAACTTCATCCTTTCACAA TGTGGGTATCATAAATACAAGCTATGACGTAGCACATACCTTGAGGAAAGGCGCTGACTCCTGATCGAGTACATA GCTGGGTAAAGGCGTGGTCGCGTTTGTCCGGGCAACATTAGGGTTCGAGCAGGAGATTATGCGACAAGGTCCATT GCTCTTTCTATCTTCTAAATCCACATTTTCTGACAATCCGCAGCATCCGAGCGCCTCTATGAAGCAGAAACCAGC GCGGCCAACGATCAAACCCGGTCCCAGCAAAACGCCCAAGCACCCAATGCTTTTCACTCCGATATCTATGCTGCC GGTACCGAATACGCGTTGTGCCAAGCAATCGCCCAATTGATGAGTGCAGTGGTTGGGGTGCTGAATGAAAGCCTG ACAGAAAGTATCAAAGCGTTCTACCGACTGAGGAAGGCTTATATCGCACTCGATGCGATCATGAAGATGGAAGAG AAGTTTATGGAGCAGAGGGATATACGCAAAGTTTTACGGCCCACTGCGAGTGATCTCTCAAGCTCGAGCGCTGCA TGCCCAGACACGAAGTCGGAGTCGTCCAGTCTTCTATCGAAAAAGAGCGCGAAAATGGCTAACATCGAGAAATCC GAGCTTAATTCCTCAATGAATTCACTGGCGATCTCATCCAGGGCGGTATCTCCAGATGTTTCAACTCCTTCCACA CTTGCGAAGCATATCCACCAAGACCCCGACTCGGATATCTTCAAGAATGAAATCGATGTTTTTGTGCACTCTGGT TCCAATTTCTGCTTTGGTATTCTTCTTCTACTGATCTCTATGGTTCCACCGGCGTTCAGCAAACTTCTTTCCATT ATTGGCTTCCACGGTGACAAGCAACGAGGGCTGAGAATGCTCTGGCAAGCCAGCAAGTTCCACAACCTTATCGGT GCCATGGCTGCTTTGGCACTGCTGGGGTATTACAATGGCTTTGTCCGCTACTGCGATATTATGCCCGACCCAACT CCTGGTGGATCCGACGTTGAGGGATACCCGCAGGAGAGGCTGGCTGCGTTGCTGGCGGAGATGCGGTTCCGGTTC CCCAACAGTCAACTTTGGCTGCTCGAAGAATCGCGGATGTTAGGCGCGAACAAAAAGCTGGACAGTGCTCTGGAA GTGTTGTCCACGGACAAGAAGAGCCCGCTCAAGCAGGTAGAGGGGTTGTGCGTGTTTGAGAAGAGCTTGAACGCA TTGTTTCTCCACAGATATAATGTCTGTGCTGAAGCATTCATTGAGGTATAAATCTTATCTGGAGATTTTTGAAAC ATCAAGCTAATCCTTTCAGTGCGTGGAACTCAATACGTGGTCTCGTTCATTGTATTACTACATTGCCGGATCGTG TCATGTTGTCCTGTACCGGCAATCACTCGACGACCCAAAGCTTGCAGCGGAACATGCTAAAAAAGCCACCATGTA CATGCGGAAGGCACCCGAATTCGCGGGGAAAAAGCGATTTATGGCCCGACAACTGCCGTTTGATATCTTTGTGAC TCGGAAAATTGCCAAATGGGAGGCGCGCGCCAAAGAATGGAACGTATCTCTGGTGGATGCGATTGGAGTGGACCC GGTTGAAGAAATGATCTTTTTCTGGAACGGACACAGTCGCATGACCAACGAGCAACTGCAGGAGTCTTTGACCCG GCTGGAATGGTGCGAAAGCGAAAAGAACAAGATGTGGTCTCGTGAGGGAAGCGAAGAAAAGGCGATCCTGGAGCT TCTCCGGGCTGCTGTTTTTCGATCCCTGTACAGACACGAAGAGGCGAAAAAGATCCTTTTGACCTGCGTCTTGAA CCACGAGAAGTCTGTATTCAAGGGCCACCTGAAGGATGACTGGGTCCACCCAGTGGCGCATTTCGAAATGGCCGC CAACCTCTGGATGCAGCGTCCTACATACCAGGCCCTGCATGGGATTACTTCCCCCGAGGCGTCGGAGGAAGCGTC CGCGGAATCTAGGGAGACGAACATAGAGATCGAGAGGAAGCAGGTATCCGAGTGCAAGGGATACCTCGACTTCGC TGCTCGCTGGGAGAGCTATGAGCTCGACGCTCGTATTGGACTCAAGGTTACTGCGGCGATGGAAGCAATTAACAA GTGGCAGAGCATTCATGCGGAAGTCTAA |