© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g488.t1 |
| Gene name | |
| Location | scaffold_01:1241208..1243399 |
| Strand | - |
| Gene length (bp) | 2191 |
| Transcript length (bp) | 1755 |
| Coding sequence length (bp) | 1755 |
| Protein length (aa) | 585 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00153 | Mito_carr | Mitochondrial carrier protein | 1.1E-20 | 271 | 373 |
| PF00153 | Mito_carr | Mitochondrial carrier protein | 1.2E-20 | 384 | 476 |
| PF00153 | Mito_carr | Mitochondrial carrier protein | 5.2E-21 | 492 | 581 |
| PF13499 | EF-hand_7 | EF-hand domain pair | 3.0E-11 | 85 | 140 |
| PF13202 | EF-hand_5 | EF hand | 2.4E-04 | 57 | 75 |
| PF13202 | EF-hand_5 | EF hand | 2.4E-04 | 86 | 105 |
| PF13202 | EF-hand_5 | EF hand | 8.4E-05 | 120 | 142 |
| PF13833 | EF-hand_8 | EF-hand domain pair | 1.2E-03 | 46 | 76 |
| PF13833 | EF-hand_8 | EF-hand domain pair | 1.5E-02 | 95 | 142 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005509 | calcium ion binding | Yes |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0046872 | metal ion binding | No |
| GO:0043169 | cation binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 85.86 | 52.69 | 119.02 |
| 5d_25C | Five days - 25 degrees Celsius | 117.73 | 71.35 | 164.10 |
| 7d_25C | Seven days - 25 degrees Celsius | 120.55 | 73.27 | 167.84 |
| 10d_25C | Ten days - 25 degrees Celsius | 152.85 | 91.90 | 213.81 |
| 7d_15C | Seven days - 15 degrees Celsius | 142.39 | 84.29 | 200.49 |
| 7d_30C | Seven days - 30 degrees Celsius | 96.12 | 58.55 | 133.69 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.143169 | no |
| 3d_25C | 7d_25C | 0.104886 | no |
| 3d_25C | 7d_15C | 0.012609 | yes |
| 3d_25C | 7d_30C | 0.682402 | no |
| 3d_25C | 10d_25C | 0.003625 | yes |
| 5d_25C | 7d_25C | 0.942559 | no |
| 5d_25C | 7d_15C | 0.444283 | no |
| 5d_25C | 7d_30C | 0.400869 | no |
| 5d_25C | 10d_25C | 0.255838 | no |
| 7d_25C | 7d_15C | 0.523239 | no |
| 7d_25C | 7d_30C | 0.340353 | no |
| 7d_25C | 10d_25C | 0.310229 | no |
| 7d_15C | 7d_30C | 0.069248 | no |
| 7d_15C | 10d_25C | 0.821292 | no |
| 7d_30C | 10d_25C | 0.026091 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g488.t1 MASGESKDERDKRVAKLWETLDTRREGHIDLNGLKKGLKKIDHPLKNADDMVLRVAREVDTNGDGRIDQAEFRAF INRTEDGLWQMFQSIDRNKNGEIDKMELRNAFSRSGVTVSSAKLDRFFAEVDKNHDGVISYTEWRDFLLFLPLQS PTDLRAVLSYYTATGNLNPEGDVNINDLQGLGTNHPFLSSCIPAIQHVLYNFLSLPALAPFLPSAHAQTSHISKP EPVLEHEFVSLDADLDLEWLPLPQTTAMRMSFRYHGRKLTENTPQLGYFLAGGMAGAVSRTATAPLDRLKIYLIA QTSVKSTVQAAKDGSLLTAVGNDPRTLFGALKELWRAGGIRSLFAGNGLNVVKVMPESAIKFGAYESAKRAFAQL EGHNDPKRLRPTSQFMSGGFGGMVAQCFVYPLDTLKFRMQCETVKGGPKGNQLIAATARKVWNKNGLAGFFRGLP LGLVGMFPYAAIDLSTFEYLKRALIAKKARDCGCHEDDVPLGNFATGAIGAMSGGFSASIVYPLNVLRTRLQTQG TILHPPTYTGIGEVLSVTLKAEGPRGLYKGLTPNLLKVAPAMSISYVVYENAKRILGLR* |
| Coding | >Pro_DTO377G3_2|g488.t1 ATGGCATCCGGAGAGTCAAAAGATGAACGCGACAAACGAGTCGCCAAACTCTGGGAAACCTTGGACACTCGACGA GAGGGCCATATCGACCTGAATGGGTTAAAGAAGGGGTTAAAGAAAATTGATCATCCTCTAAAAAATGCAGACGAT ATGGTACTCAGGGTCGCGCGGGAGGTGGATACGAATGGTGATGGACGTATCGACCAAGCCGAATTCCGAGCATTC ATCAACCGCACCGAGGACGGACTATGGCAGATGTTCCAGAGCATTGATCGAAATAAAAACGGAGAAATCGACAAG ATGGAATTGCGGAATGCCTTTTCACGTTCCGGGGTCACAGTCTCGAGCGCCAAGTTGGACCGGTTTTTCGCGGAA GTCGATAAGAACCATGACGGCGTGATCTCTTACACTGAGTGGAGGGATTTCCTTCTATTCCTCCCTCTCCAATCC CCGACCGACCTACGCGCAGTCCTTTCATACTATACGGCCACGGGCAATCTAAACCCGGAAGGAGATGTCAACATC AATGACCTGCAGGGTTTAGGTACAAATCATCCGTTTCTTTCATCTTGTATTCCGGCCATCCAACACGTTTTGTAC AACTTTTTGTCCCTCCCCGCCTTGGCCCCCTTCCTTCCTTCAGCACACGCACAAACCAGCCATATCTCAAAACCG GAACCCGTTCTCGAGCATGAATTTGTCTCGCTAGACGCCGACTTGGATTTGGAATGGCTGCCTCTTCCCCAGACT ACCGCCATGCGGATGTCTTTCCGATATCATGGACGGAAGTTGACCGAAAATACCCCTCAATTAGGCTACTTCCTT GCAGGTGGAATGGCGGGTGCCGTGTCAAGGACGGCCACCGCCCCCCTCGATCGTCTCAAAATCTATCTCATTGCG CAGACTAGCGTCAAATCAACGGTTCAGGCGGCGAAGGACGGATCCCTGTTGACTGCGGTGGGGAACGATCCCAGA ACATTGTTCGGCGCTCTCAAGGAACTATGGCGGGCTGGAGGAATACGGAGTTTGTTCGCAGGCAATGGCTTGAAC GTGGTAAAGGTTATGCCAGAGTCTGCGATCAAGTTTGGTGCCTATGAGTCTGCGAAACGAGCATTTGCACAACTC GAAGGACACAATGATCCCAAGCGACTTCGTCCCACTTCACAGTTCATGTCGGGTGGCTTTGGTGGAATGGTTGCC CAATGTTTTGTTTACCCCCTCGATACCCTAAAATTTCGCATGCAATGCGAAACCGTGAAAGGTGGCCCGAAAGGC AATCAACTCATCGCAGCTACCGCAAGAAAGGTATGGAATAAGAATGGCTTGGCTGGCTTCTTCCGAGGACTACCG CTTGGCCTTGTGGGGATGTTCCCCTACGCCGCAATCGATCTATCGACATTTGAATACCTCAAACGAGCACTCATA GCTAAAAAGGCTCGTGACTGTGGCTGCCATGAGGATGACGTTCCCCTCGGCAACTTCGCGACAGGTGCAATTGGT GCTATGAGTGGAGGATTCAGCGCCTCGATTGTCTACCCACTCAATGTTCTCCGCACTCGACTTCAAACTCAAGGC ACGATTTTGCATCCGCCTACATACACAGGGATTGGTGAAGTCCTAAGCGTCACACTCAAAGCAGAGGGACCCCGT GGTCTTTACAAAGGTCTCACACCTAATCTTCTCAAAGTGGCACCGGCCATGTCAATCAGCTACGTGGTCTACGAG AACGCGAAACGCATTCTCGGCCTACGATGA |
| Transcript | >Pro_DTO377G3_2|g488.t1 ATGGCATCCGGAGAGTCAAAAGATGAACGCGACAAACGAGTCGCCAAACTCTGGGAAACCTTGGACACTCGACGA GAGGGCCATATCGACCTGAATGGGTTAAAGAAGGGGTTAAAGAAAATTGATCATCCTCTAAAAAATGCAGACGAT ATGGTACTCAGGGTCGCGCGGGAGGTGGATACGAATGGTGATGGACGTATCGACCAAGCCGAATTCCGAGCATTC ATCAACCGCACCGAGGACGGACTATGGCAGATGTTCCAGAGCATTGATCGAAATAAAAACGGAGAAATCGACAAG ATGGAATTGCGGAATGCCTTTTCACGTTCCGGGGTCACAGTCTCGAGCGCCAAGTTGGACCGGTTTTTCGCGGAA GTCGATAAGAACCATGACGGCGTGATCTCTTACACTGAGTGGAGGGATTTCCTTCTATTCCTCCCTCTCCAATCC CCGACCGACCTACGCGCAGTCCTTTCATACTATACGGCCACGGGCAATCTAAACCCGGAAGGAGATGTCAACATC AATGACCTGCAGGGTTTAGGTACAAATCATCCGTTTCTTTCATCTTGTATTCCGGCCATCCAACACGTTTTGTAC AACTTTTTGTCCCTCCCCGCCTTGGCCCCCTTCCTTCCTTCAGCACACGCACAAACCAGCCATATCTCAAAACCG GAACCCGTTCTCGAGCATGAATTTGTCTCGCTAGACGCCGACTTGGATTTGGAATGGCTGCCTCTTCCCCAGACT ACCGCCATGCGGATGTCTTTCCGATATCATGGACGGAAGTTGACCGAAAATACCCCTCAATTAGGCTACTTCCTT GCAGGTGGAATGGCGGGTGCCGTGTCAAGGACGGCCACCGCCCCCCTCGATCGTCTCAAAATCTATCTCATTGCG CAGACTAGCGTCAAATCAACGGTTCAGGCGGCGAAGGACGGATCCCTGTTGACTGCGGTGGGGAACGATCCCAGA ACATTGTTCGGCGCTCTCAAGGAACTATGGCGGGCTGGAGGAATACGGAGTTTGTTCGCAGGCAATGGCTTGAAC GTGGTAAAGGTTATGCCAGAGTCTGCGATCAAGTTTGGTGCCTATGAGTCTGCGAAACGAGCATTTGCACAACTC GAAGGACACAATGATCCCAAGCGACTTCGTCCCACTTCACAGTTCATGTCGGGTGGCTTTGGTGGAATGGTTGCC CAATGTTTTGTTTACCCCCTCGATACCCTAAAATTTCGCATGCAATGCGAAACCGTGAAAGGTGGCCCGAAAGGC AATCAACTCATCGCAGCTACCGCAAGAAAGGTATGGAATAAGAATGGCTTGGCTGGCTTCTTCCGAGGACTACCG CTTGGCCTTGTGGGGATGTTCCCCTACGCCGCAATCGATCTATCGACATTTGAATACCTCAAACGAGCACTCATA GCTAAAAAGGCTCGTGACTGTGGCTGCCATGAGGATGACGTTCCCCTCGGCAACTTCGCGACAGGTGCAATTGGT GCTATGAGTGGAGGATTCAGCGCCTCGATTGTCTACCCACTCAATGTTCTCCGCACTCGACTTCAAACTCAAGGC ACGATTTTGCATCCGCCTACATACACAGGGATTGGTGAAGTCCTAAGCGTCACACTCAAAGCAGAGGGACCCCGT GGTCTTTACAAAGGTCTCACACCTAATCTTCTCAAAGTGGCACCGGCCATGTCAATCAGCTACGTGGTCTACGAG AACGCGAAACGCATTCTCGGCCTACGATGA |
| Gene | >Pro_DTO377G3_2|g488.t1 ATGGCATCCGGAGAGTCAAAAGATGAACGCGACAAACGAGTCGCCAAACTCTGGGAAACCTTGGACACTCGACGA GAGGGCCATATCGACCTGAATGGGTTAAAGAAGGGGTTAAAGAAAATTGATCATCGTGAGTTGGACCTGGTTTCT TGCTCTATATCTACGCTTGTCTAATCTCTTTCTAGCTCTAAAAAATGCAGACGATATGGTACTCAGGGTCGCGCG GGAGGTGGATACGAATGGTGATGGACGTATCGACCAAGCCGGTAAGCTCACGAGAACCACCTAGGGATCACTCGG CGAAGGGGTGCCCTGGCCAAGATTTGGTCCAATCCTAATCACCACCAGAATTCCGAGCATTCATCAACCGCACCG AGGACGGACTATGGCAGATGTTCCAGAGCATTGATCGAAATAAAAACGGAGAAATCGACAAGATGGAATTGCGGA ATGCCTTTTCACGTTCCGGGGTCACAGTCTCGAGCGCCAAGTTGGACCGGTTTTTCGCGGAAGTCGATAAGAACC ATGACGGCGTGATCTCTTACACTGAGTGGAGGTATACGCATCCTCACTCTGGTCAATGAAGGCTGAAAAATCCTA GGCTAACAAATTTACCCTTCTCTTTTTTTTAGGGATTTCCTTCTATTCCTCCCTCTCCAATCCCCGACCGACCTA CGCGCAGTCCTTTCATACTATACGGCCACGGGCAATCTAAACCCGGAAGGAGATGTCAACATCAATGACCTGCAG GGTTTAGGTACAAATCATCCGTTTCTTTCATCTTGTATTCCGGCCATCCAACACGTTTTGTACAACTTTTTGTCC CTCCCCGCCTTGGCCCCCTTCCTTCCTTCAGCACACGCACAAACCAGCCATATCTCAAAACCGGAACCCGTTCTC GAGCATGAATTTGTCTCGCTAGACGCCGACTTGGATTTGGAATGGCTGCCTCTTCCCCAGACTACCGCCATGCGG ATGTCTTTCCGATATCATGGACGGAAGTTGACCGAAAATACCCCTCAATTAGGCTACTTCCTTGCAGGTGGAATG GCGGGTGCCGTGTCAAGGACGGCCACCGCCCCCCTCGATCGTCTCAAAATCTATCTCATTGCGCAGACTAGCGTC AAATCAACGGTTCAGGCGGCGAAGGACGGATCCCTGTTGACTGCGGTGGGGAACGATCCCAGAACATTGTTCGGC GCTCTCAAGGAACTATGGCGGGCTGGAGGAATACGGAGTTTGTTCGCAGGTTTGTCATATTGTCAACCTGGACTC GAAGTGGCAGCGACTAACTATAAGTAGGCAATGGCTTGAACGTGGTAAAGGTTATGCCAGAGTCTGCGATCAAGT TTGGTGCCTATGAGGTTTGTAATCTTGCTATTCGATTTCGCCTACACAACTAGACGAATACTGACCAGAGAACAG TCTGCGAAACGAGCATTTGCACAACTCGAAGGACACAATGATCCCAAGCGACTTCGTCCCACTTCACAGTTCATG TCGGGTGGCTTTGGTGGAATGGTTGCCCAGTAGGTCTTGCGCGTTATCTATGAAAGGCAAGTCGGTTCTGATTGT GACTAGATGTTTTGTTTACCCCCTCGATACCCTAAAATTGTGAGTACATCGACCAAAGTGAGTTGTGAGAGCATT GTGGCTCATAGTTATCAATAGTCGCATGCAATGCGAAACCGTGAAAGGTGGCCCGAAAGGCAATCAACTCATCGC AGCTACCGCAAGAAAGGTATGGAATAAGAATGGCTTGGCTGGCTTCTTCCGAGGACTACCGCTTGGCCTTGTGGG GATGTTCCCCTACGCCGCAATCGATCTATCGACATTTGAATACCTCAAACGAGCACTCATAGCTAAAAAGGCTCG TGACTGTGGCTGCCATGAGGATGACGTTCCCCTCGGCAACTTCGCGACAGGTGCAATTGGTGCTATGAGTGGAGG ATTCAGCGCCTCGATTGTCTACCCACTCAATGTTCTCCGCACTCGACTTCAAACTCAAGGCACGATTTTGCATCC GCCTACATACACAGGGATTGGTGAAGTCCTAAGCGTCACACTCAAAGCAGAGGGACCCCGTGGTCTTTACAAAGG TCTCACACCTAATCTTCTCAAAGTGGCACCGGCCATGTCAATCAGCTACGTGGTCTACGAGAACGCGAAACGCAT TCTCGGCCTACGATGA |