© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4863.t1 |
| Gene name | |
| Location | scaffold_10:575965..577065 |
| Strand | - |
| Gene length (bp) | 1100 |
| Transcript length (bp) | 921 |
| Coding sequence length (bp) | 921 |
| Protein length (aa) | 307 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00096 | zf-C2H2 | Zinc finger, C2H2 type | 1.0E-05 | 226 | 246 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 66 | 0.45 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| C2H2 zinc finger |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 3.89 | 0.78 | 6.99 |
| 5d_25C | Five days - 25 degrees Celsius | 1.95 | 0.04 | 3.87 |
| 7d_25C | Seven days - 25 degrees Celsius | 1.49 | 0.00 | 3.03 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.22 | 0.00 | 0.62 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.74 | 0.00 | 1.90 |
| 7d_30C | Seven days - 30 degrees Celsius | 1.36 | 0.00 | 2.76 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.197390 | no |
| 3d_25C | 7d_25C | 0.056008 | no |
| 3d_25C | 7d_15C | 0.062802 | no |
| 3d_25C | 7d_30C | 0.039986 | yes |
| 3d_25C | 10d_25C | 0.049575 | yes |
| 5d_25C | 7d_25C | 0.708494 | no |
| 5d_25C | 7d_15C | 0.252265 | no |
| 5d_25C | 7d_30C | 0.604378 | no |
| 5d_25C | 10d_25C | 0.082612 | no |
| 7d_25C | 7d_15C | 0.404991 | no |
| 7d_25C | 7d_30C | 0.913943 | no |
| 7d_25C | 10d_25C | 0.108807 | no |
| 7d_15C | 7d_30C | 0.481507 | no |
| 7d_15C | 10d_25C | 0.305567 | no |
| 7d_30C | 10d_25C | 0.114216 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4863.t1 MLSTCYTTQRTNIFREPLYNFPASVTAYRGIGIEEMSTCRTSIVSILNNDDNPSFAVRSAPRLSRTHISSSQYPH SERPPSPISDPQYTRPAASSQSPATSPRGSRHHSDAVTDVAQPASPGSSDGSAYDYLTSQPSSYHPYARQDPRRE PYRFPARGPAAPRTSPETRSTTSETASQTGATRGTGRKNKYPCPYAASHGCSSTFTTSGHAARHGKKHTGEKSVH CPICNKAFTRKDNMKQHIRTHRSHSDEMRSISESEPDARWAMARPDAVYASVSHQRNVSQPIEAGARPVPGSVPV PGPQAP* |
| Coding | >Pro_DTO377G3_2|g4863.t1 ATGTTGTCGACGTGTTACACGACACAGAGGACAAACATATTTCGAGAGCCGCTGTATAATTTCCCAGCCTCGGTG ACCGCATATCGGGGCATTGGCATTGAGGAGATGTCCACTTGTAGGACGAGTATTGTGTCCATTCTGAATAATGAT GATAACCCATCTTTTGCGGTCCGTTCCGCGCCCCGACTTAGTCGGACTCACATATCATCATCACAATATCCACAT TCAGAGCGACCACCCTCTCCTATCAGCGACCCACAGTATACCCGCCCTGCAGCTTCATCCCAATCTCCAGCAACA TCACCACGAGGGAGCAGGCATCATTCAGACGCGGTGACGGACGTCGCCCAGCCCGCTTCGCCCGGGTCGTCCGAT GGCTCAGCTTACGACTATCTCACCAGTCAACCATCATCTTACCACCCGTATGCCCGGCAGGATCCGCGACGGGAA CCATACCGATTCCCAGCTCGCGGGCCAGCAGCTCCCCGAACATCACCCGAGACTCGTTCAACCACATCCGAAACG GCTTCTCAGACCGGAGCGACGCGCGGCACGGGGCGAAAGAACAAGTACCCGTGCCCCTATGCCGCGAGCCATGGG TGCTCTTCCACATTTACGACTTCGGGCCATGCTGCGCGCCACGGCAAAAAGCACACCGGCGAAAAGAGCGTGCAC TGTCCGATCTGCAACAAAGCCTTTACGAGGAAAGACAACATGAAACAGCACATCCGGACCCATCGCTCGCACTCG GACGAGATGCGCTCTATTTCCGAGTCGGAGCCTGATGCTCGGTGGGCGATGGCTCGTCCTGACGCGGTATACGCC TCCGTCTCGCACCAGCGCAATGTCAGTCAACCTATCGAGGCAGGTGCACGGCCGGTCCCAGGGTCTGTCCCAGTG CCTGGTCCCCAGGCGCCCTAA |
| Transcript | >Pro_DTO377G3_2|g4863.t1 ATGTTGTCGACGTGTTACACGACACAGAGGACAAACATATTTCGAGAGCCGCTGTATAATTTCCCAGCCTCGGTG ACCGCATATCGGGGCATTGGCATTGAGGAGATGTCCACTTGTAGGACGAGTATTGTGTCCATTCTGAATAATGAT GATAACCCATCTTTTGCGGTCCGTTCCGCGCCCCGACTTAGTCGGACTCACATATCATCATCACAATATCCACAT TCAGAGCGACCACCCTCTCCTATCAGCGACCCACAGTATACCCGCCCTGCAGCTTCATCCCAATCTCCAGCAACA TCACCACGAGGGAGCAGGCATCATTCAGACGCGGTGACGGACGTCGCCCAGCCCGCTTCGCCCGGGTCGTCCGAT GGCTCAGCTTACGACTATCTCACCAGTCAACCATCATCTTACCACCCGTATGCCCGGCAGGATCCGCGACGGGAA CCATACCGATTCCCAGCTCGCGGGCCAGCAGCTCCCCGAACATCACCCGAGACTCGTTCAACCACATCCGAAACG GCTTCTCAGACCGGAGCGACGCGCGGCACGGGGCGAAAGAACAAGTACCCGTGCCCCTATGCCGCGAGCCATGGG TGCTCTTCCACATTTACGACTTCGGGCCATGCTGCGCGCCACGGCAAAAAGCACACCGGCGAAAAGAGCGTGCAC TGTCCGATCTGCAACAAAGCCTTTACGAGGAAAGACAACATGAAACAGCACATCCGGACCCATCGCTCGCACTCG GACGAGATGCGCTCTATTTCCGAGTCGGAGCCTGATGCTCGGTGGGCGATGGCTCGTCCTGACGCGGTATACGCC TCCGTCTCGCACCAGCGCAATGTCAGTCAACCTATCGAGGCAGGTGCACGGCCGGTCCCAGGGTCTGTCCCAGTG CCTGGTCCCCAGGCGCCCTAA |
| Gene | >Pro_DTO377G3_2|g4863.t1 ATGTTGTCGACGTGTTACACGACACAGAGGACAAACATATTTCGAGAGCCGCTGGTGCGTTTGTCGGGTCCTCCG GGGGGGCAAGAAATGAGAGAGATATTCTTTCTCTTCTTCTACACCCTCTTCCCTTTCTCCCCTTGTCTCAGACCG GCGATCTCTCGAGTTCTTGCGAGTTCCCAGAGCCCGGCTGAGCCGGTTGCCAACAGTCTAAACTAACTTCATTTT GTCTCTAGTATAATTTCCCAGCCTCGGTGACCGCATATCGGGGCATTGGCATTGAGGAGATGTCCACTTGTAGGA CGAGTATTGTGTCCATTCTGAATAATGATGATAACCCATCTTTTGCGGTCCGTTCCGCGCCCCGACTTAGTCGGA CTCACATATCATCATCACAATATCCACATTCAGAGCGACCACCCTCTCCTATCAGCGACCCACAGTATACCCGCC CTGCAGCTTCATCCCAATCTCCAGCAACATCACCACGAGGGAGCAGGCATCATTCAGACGCGGTGACGGACGTCG CCCAGCCCGCTTCGCCCGGGTCGTCCGATGGCTCAGCTTACGACTATCTCACCAGTCAACCATCATCTTACCACC CGTATGCCCGGCAGGATCCGCGACGGGAACCATACCGATTCCCAGCTCGCGGGCCAGCAGCTCCCCGAACATCAC CCGAGACTCGTTCAACCACATCCGAAACGGCTTCTCAGACCGGAGCGACGCGCGGCACGGGGCGAAAGAACAAGT ACCCGTGCCCCTATGCCGCGAGCCATGGGTGCTCTTCCACATTTACGACTTCGGGCCATGCTGCGCGCCACGGCA AAAAGCACACCGGCGAAAAGAGCGTGCACTGTCCGATCTGCAACAAAGCCTTTACGAGGAAAGACAACATGAAAC AGCACATCCGGACCCATCGCTCGCACTCGGACGAGATGCGCTCTATTTCCGAGTCGGAGCCTGATGCTCGGTGGG CGATGGCTCGTCCTGACGCGGTATACGCCTCCGTCTCGCACCAGCGCAATGTCAGTCAACCTATCGAGGCAGGTG CACGGCCGGTCCCAGGGTCTGTCCCAGTGCCTGGTCCCCAGGCGCCCTAA |