© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4855.t1 |
| Gene name | |
| Location | scaffold_10:559885..560970 |
| Strand | + |
| Gene length (bp) | 1085 |
| Transcript length (bp) | 855 |
| Coding sequence length (bp) | 855 |
| Protein length (aa) | 285 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF11807 | UstYa | Mycotoxin biosynthesis protein UstYa | 2.2E-53 | 37 | 259 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0043386 | mycotoxin biosynthetic process | Yes |
| GO:0009403 | toxin biosynthetic process | No |
| GO:0008150 | biological_process | No |
| GO:0009987 | cellular process | No |
| GO:0009404 | toxin metabolic process | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0044550 | secondary metabolite biosynthetic process | No |
| GO:0019748 | secondary metabolic process | No |
| GO:0043385 | mycotoxin metabolic process | No |
| GO:0009058 | biosynthetic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 42 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 43 | 65 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 35.44 | 17.75 | 53.13 |
| 5d_25C | Five days - 25 degrees Celsius | 33.78 | 16.54 | 51.01 |
| 7d_25C | Seven days - 25 degrees Celsius | 34.41 | 15.62 | 53.20 |
| 10d_25C | Ten days - 25 degrees Celsius | 19.41 | 7.47 | 31.36 |
| 7d_15C | Seven days - 15 degrees Celsius | 52.45 | 21.77 | 83.13 |
| 7d_30C | Seven days - 30 degrees Celsius | 55.42 | 29.54 | 81.30 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.913162 | no |
| 3d_25C | 7d_25C | 0.951059 | no |
| 3d_25C | 7d_15C | 0.217400 | no |
| 3d_25C | 7d_30C | 0.099459 | no |
| 3d_25C | 10d_25C | 0.052003 | no |
| 5d_25C | 7d_25C | 0.969718 | no |
| 5d_25C | 7d_15C | 0.161749 | no |
| 5d_25C | 7d_30C | 0.068946 | no |
| 5d_25C | 10d_25C | 0.084264 | no |
| 7d_25C | 7d_15C | 0.208568 | no |
| 7d_25C | 7d_30C | 0.104111 | no |
| 7d_25C | 10d_25C | 0.081384 | no |
| 7d_15C | 7d_30C | 0.901644 | no |
| 7d_15C | 10d_25C | 0.001278 | yes |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4855.t1 MDSIFDKNCHGDYSRRESGEGLLAEEEGTLWNRKETPTPTCNSFAVCLFQLSALVLVFLVGTLFGFHWRGDLDGL CSRHVSQYSTVMKEVGIQYSLQEFNGSLLKENVFRQDAGPDVDAAWESLGVNYRSIRVPPEDAEKSGLANDQVKI NAKYGGGFPANVEGLHHLHCLNLLRQSLYYNYDYYHAKGEGPFTNNDYILRRHVSHCLDIVRQELMCTVDSGVLG QVWIYPENPEPYVDFNTQHRCKNFDAVRRWAEDNQLPQDPPSDFLQPPSEGDRIYIQMP* |
| Coding | >Pro_DTO377G3_2|g4855.t1 ATGGACTCTATCTTCGACAAGAATTGTCATGGGGACTATTCTAGGCGAGAGTCCGGTGAGGGACTTCTCGCAGAG GAAGAAGGCACTCTCTGGAATAGAAAGGAAACACCAACGCCAACGTGTAACAGCTTCGCGGTGTGTCTGTTTCAG CTGAGTGCACTTGTGCTGGTATTCTTAGTCGGGACTCTGTTCGGCTTTCACTGGCGTGGTGATTTGGATGGCCTT TGCAGTCGACATGTTTCTCAATATTCAACTGTCATGAAGGAAGTTGGAATTCAATATAGTCTGCAAGAATTCAAT GGCTCTCTACTGAAAGAGAATGTTTTTCGACAAGATGCTGGCCCAGATGTTGACGCAGCATGGGAGTCGTTGGGC GTCAACTACCGCAGCATTCGAGTACCACCAGAGGATGCTGAAAAATCTGGACTTGCTAACGACCAAGTCAAGATC AATGCGAAGTATGGGGGAGGATTTCCTGCGAATGTCGAGGGCTTGCATCACCTTCACTGTCTGAATCTCCTCCGT CAGTCGCTCTACTATAACTATGACTACTACCACGCCAAGGGGGAAGGGCCCTTCACGAACAATGACTATATCCTC CGCCGCCACGTGTCACATTGCCTCGATATTGTTCGGCAAGAGCTCATGTGCACAGTTGACAGCGGAGTGCTGGGT CAAGTCTGGATTTACCCCGAGAACCCGGAGCCCTATGTTGACTTCAACACTCAGCATCGATGTAAAAACTTCGAT GCCGTTCGTCGCTGGGCCGAGGACAACCAGCTTCCTCAGGACCCCCCTTCAGACTTTTTGCAGCCGCCATCAGAG GGAGACCGAATCTATATCCAAATGCCATGA |
| Transcript | >Pro_DTO377G3_2|g4855.t1 ATGGACTCTATCTTCGACAAGAATTGTCATGGGGACTATTCTAGGCGAGAGTCCGGTGAGGGACTTCTCGCAGAG GAAGAAGGCACTCTCTGGAATAGAAAGGAAACACCAACGCCAACGTGTAACAGCTTCGCGGTGTGTCTGTTTCAG CTGAGTGCACTTGTGCTGGTATTCTTAGTCGGGACTCTGTTCGGCTTTCACTGGCGTGGTGATTTGGATGGCCTT TGCAGTCGACATGTTTCTCAATATTCAACTGTCATGAAGGAAGTTGGAATTCAATATAGTCTGCAAGAATTCAAT GGCTCTCTACTGAAAGAGAATGTTTTTCGACAAGATGCTGGCCCAGATGTTGACGCAGCATGGGAGTCGTTGGGC GTCAACTACCGCAGCATTCGAGTACCACCAGAGGATGCTGAAAAATCTGGACTTGCTAACGACCAAGTCAAGATC AATGCGAAGTATGGGGGAGGATTTCCTGCGAATGTCGAGGGCTTGCATCACCTTCACTGTCTGAATCTCCTCCGT CAGTCGCTCTACTATAACTATGACTACTACCACGCCAAGGGGGAAGGGCCCTTCACGAACAATGACTATATCCTC CGCCGCCACGTGTCACATTGCCTCGATATTGTTCGGCAAGAGCTCATGTGCACAGTTGACAGCGGAGTGCTGGGT CAAGTCTGGATTTACCCCGAGAACCCGGAGCCCTATGTTGACTTCAACACTCAGCATCGATGTAAAAACTTCGAT GCCGTTCGTCGCTGGGCCGAGGACAACCAGCTTCCTCAGGACCCCCCTTCAGACTTTTTGCAGCCGCCATCAGAG GGAGACCGAATCTATATCCAAATGCCATGA |
| Gene | >Pro_DTO377G3_2|g4855.t1 ATGGACTCTATCTTCGACAAGAATTGTCATGGGGACTATTCTAGGCGAGAGTCCGGTGAGGGACTTCTCGCAGAG GAAGAAGGCACTCTCTGGAATAGAAAGGAAACACCAACGCCAACGTGTAACAGCTTCGCGGTGTGTCTGTTTCAG CTGAGTGCACTTGTGCTGGTATTCTTAGTCGGGACTCTGTTCGGCTTTCACTGGCGTGGTGATTTGGATGGCCTT TGCAGTCGACATGTTTCTCAATATTGTAAGAGTTCCAAGCTTCTATGGTGCAACTCATTAATCTTATTGAGATAC AGCAACTGTCATGAAGGAAGTTGGAATTCAATATAGTCTGCAAGAATTCAATGGCTCTCTACTGAAAGAGAATGT TTTTCGACAAGATGCTGGCCCAGATGTTGACGCAGCATGGGAGTCGTTGGGCGTCAACTGTATGTCCCAAAGTGA TTAACTGCTTTCTGGCATGGGCTAATTAGAATCATGATCTAAGACCGCAGCATTCGAGTACCACCAGAGGATGCT GAAAAATCTGGACTTGCTAACGACCAAGTCAAGATCAATGCGAAGTATGGGGGAGGATTTCCTGCGAATGTCGAG GGCTTGCATCACCTTCACTGTCTGGTAAGTGGTCTAGACCTCGACCTATGTCTGTGAAGATGCTATACTAATACC GACAAGAATCTCCTCCGTCAGTCGCTCTACTATAACTATGACTACTACCACGCCAAGGGGGAAGGGCCCTTCACG AACAATGACTATATCCTCCGCCGCCACGTGTGTATGTTGTGCCCATTATTCCTTTCTCGATAAGATTTTGAACTA ATTATTCTCTCATCGCAGCACATTGCCTCGATATTGTTCGGCAAGAGCTCATGTGCACAGTTGACAGCGGAGTGC TGGGTCAAGTCTGGATTTACCCCGAGAACCCGGAGCCCTATGTTGACTTCAACACTCAGCATCGATGTAAAAACT TCGATGCCGTTCGTCGCTGGGCCGAGGACAACCAGCTTCCTCAGGACCCCCCTTCAGACTTTTTGCAGCCGCCAT CAGAGGGAGACCGAATCTATATCCAAATGCCATGA |