Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g4842.t1
Gene name
Locationscaffold_10:537461..538508
Strand-
Gene length (bp)1047
Transcript length (bp)927
Coding sequence length (bp)927
Protein length (aa) 309

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF09011 HMG_box_2 HMG-box domain 3.0E-08 224 286
PF00505 HMG_box HMG (high mobility group) box 3.0E-08 224 288

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
HMG

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g4842.t1
MTWQSAARGGFLRTLHRGALPPRTGVNDLQNQLSRICLTVNSGSMRPQAQPVSSIRSLFQSNSFATASTPPKATK
TPKAKSTKKAGIKAKKPHLTEAQQENRKIKQLRAQIRELKATALIRPPKKLPTSAYSLALSEKLRAIKGQYPVKE
AFMIGVEHSTSLNPQDEERLQAQAKVNIAANAVAYESWVKSHTPLQIKDANTARLSLSRLVDKNYPSIKDDRLPK
LPKSAYLLYLGDRLETIDYQGKPGTEAFTLIAHDWNELPESEKERYYKLQIEDRQRYEREHEEAYGFPAPKSRHQ
SPEVSLST*
Coding >Pro_DTO377G3_2|g4842.t1
ATGACTTGGCAGTCTGCAGCTCGGGGGGGCTTCCTCCGCACCCTGCACCGCGGTGCTCTCCCTCCCCGTACTGGC
GTGAACGACTTGCAGAATCAGCTTAGTCGCATCTGTCTAACCGTTAACTCTGGGTCGATGCGTCCGCAAGCCCAA
CCCGTTTCCTCCATCCGTTCCCTATTCCAGTCTAATTCATTCGCTACTGCTTCTACCCCTCCCAAGGCGACTAAG
ACGCCTAAGGCGAAGAGCACCAAAAAAGCCGGCATCAAAGCGAAGAAGCCGCATCTCACCGAGGCACAACAGGAA
AATCGGAAGATCAAGCAACTCCGGGCTCAGATCAGAGAACTCAAGGCGACTGCCCTGATCCGCCCGCCTAAGAAG
CTGCCTACCTCTGCTTACAGTCTTGCTTTGTCTGAGAAGCTGCGCGCGATCAAAGGTCAATACCCGGTCAAGGAA
GCTTTTATGATTGGCGTAGAGCATTCCACATCCCTCAATCCTCAAGATGAGGAGAGACTCCAAGCCCAGGCTAAG
GTGAACATAGCTGCTAACGCTGTTGCCTACGAGTCGTGGGTCAAGTCGCACACTCCCCTTCAGATCAAGGATGCC
AACACTGCCCGCCTATCCCTTTCACGTCTTGTCGACAAGAACTACCCTTCCATCAAAGATGACCGTCTACCCAAA
CTCCCGAAATCTGCCTACCTCTTATACTTGGGAGACCGCCTCGAAACCATTGATTACCAGGGGAAGCCCGGAACA
GAGGCATTCACACTTATTGCCCACGATTGGAATGAACTACCCGAATCAGAGAAAGAACGCTACTACAAATTGCAA
ATCGAAGATCGCCAACGGTATGAGAGAGAGCACGAGGAGGCGTACGGATTCCCAGCACCCAAGAGCCGACATCAA
TCACCCGAAGTCTCGCTTTCAACCTGA
Transcript >Pro_DTO377G3_2|g4842.t1
ATGACTTGGCAGTCTGCAGCTCGGGGGGGCTTCCTCCGCACCCTGCACCGCGGTGCTCTCCCTCCCCGTACTGGC
GTGAACGACTTGCAGAATCAGCTTAGTCGCATCTGTCTAACCGTTAACTCTGGGTCGATGCGTCCGCAAGCCCAA
CCCGTTTCCTCCATCCGTTCCCTATTCCAGTCTAATTCATTCGCTACTGCTTCTACCCCTCCCAAGGCGACTAAG
ACGCCTAAGGCGAAGAGCACCAAAAAAGCCGGCATCAAAGCGAAGAAGCCGCATCTCACCGAGGCACAACAGGAA
AATCGGAAGATCAAGCAACTCCGGGCTCAGATCAGAGAACTCAAGGCGACTGCCCTGATCCGCCCGCCTAAGAAG
CTGCCTACCTCTGCTTACAGTCTTGCTTTGTCTGAGAAGCTGCGCGCGATCAAAGGTCAATACCCGGTCAAGGAA
GCTTTTATGATTGGCGTAGAGCATTCCACATCCCTCAATCCTCAAGATGAGGAGAGACTCCAAGCCCAGGCTAAG
GTGAACATAGCTGCTAACGCTGTTGCCTACGAGTCGTGGGTCAAGTCGCACACTCCCCTTCAGATCAAGGATGCC
AACACTGCCCGCCTATCCCTTTCACGTCTTGTCGACAAGAACTACCCTTCCATCAAAGATGACCGTCTACCCAAA
CTCCCGAAATCTGCCTACCTCTTATACTTGGGAGACCGCCTCGAAACCATTGATTACCAGGGGAAGCCCGGAACA
GAGGCATTCACACTTATTGCCCACGATTGGAATGAACTACCCGAATCAGAGAAAGAACGCTACTACAAATTGCAA
ATCGAAGATCGCCAACGGTATGAGAGAGAGCACGAGGAGGCGTACGGATTCCCAGCACCCAAGAGCCGACATCAA
TCACCCGAAGTCTCGCTTTCAACCTGA
Gene >Pro_DTO377G3_2|g4842.t1
ATGACTTGGCAGTCTGCAGCTCGGGGGGGCTTCCTCCGCACCCTGCACCGCGGTGCTCTCCCTCCCCGTACTGGC
GTGAACGACTTGCAGAATCAGCTTAGTCGCATCTGTCTAACCGTTAACTCTGGGTCGATGCGTCCGCAAGCCCAA
CCCGTTTCCTCCATCCGTTCCCTATTCCAGTCTAATTCATTCGCTACTGCTTCTACCCCTCCCAAGGCGACTAAG
ACGCCTAAGGCGAAGAGCACCAAAAAAGCCGGCATCAAAGCGAAGAAGCCGCATCTCACCGAGGCACAACAGGAA
AATCGGAAGATCAAGCAACTCCGGGCTCAGATCAGAGAACTCAAGGCGACTGCCCTGATCCGCCCGCCTAAGAAG
CTGCCTACCTCTGCTTACAGTCTTGCTTTGTCTGAGAAGCTGCGCGCGATCAAAGGTCAATACCCGGTCAAGGAA
GCTTTTATGATTGGCGTAGAGCATTCCACATCCCTCAATCCTCAAGATGAGGAGGTATGTGCCCTTGAGATTCTC
CGTATACGTCAGGAGCGATATACTGATCTCCCAAATCTAGAGACTCCAAGCCCAGGCTAAGGTGAACATAGCTGC
TAACGCTGTTGCCTACGAGTCGTGGGTCAAGTCGCACACTCCCCTTCAGATCAAGGATGCCAACACTGCCCGCCT
ATCCCTTTCACGTCTTGTCGACAAGAACTACCCTTCCATCAAAGATGACCGTCTACCCAAACTCCCGAAATCTGC
CTACCTCTTATACTTGGGAGACCGCCTCGAAACCATTGATTACCAGGGGAAGCCCGGAACAGAGGCATTCACACT
TATTGCCCACGATTGGAATGAACTACCCGAATCAGAGAAAGAAGTAAGGACACCGAGCAGAATTGATACATACCG
AATTGCACGTGCTGACTAGTAATCTAGCGCTACTACAAATTGCAAATCGAAGATCGCCAACGGTATGAGAGAGAG
CACGAGGAGGCGTACGGATTCCCAGCACCCAAGAGCCGACATCAATCACCCGAAGTCTCGCTTTCAACCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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