Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g4842.t1
Gene name
Locationscaffold_10:537461..538508
Strand-
Gene length (bp)1047
Transcript length (bp)927
Coding sequence length (bp)927
Protein length (aa) 309

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF09011 HMG_box_2 HMG-box domain 3.0E-08 224 286
PF00505 HMG_box HMG (high mobility group) box 3.0E-08 224 288

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
HMG

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g4842.t1
MTWQSAARGGFLRTLHRGALPPRTGVNDLQNQLSRICLTVNSGSMRPQAQPVSSIRSLFQSNSFATASTPPKATK
TPKAKSTKKAGIKAKKPHLTEAQQENRKIKQLRAQIRELKATALIRPPKKLPTSAYSLALSEKLRAIKGQYPVKE
AFMIGVEHSTSLNPQDEERLQAQAKVNIAANAVAYESWVKSHTPLQIKDANTARLSLSRLVDKNYPSIKDDRLPK
LPKSAYLLYLGDRLETIDYQGKPGTEAFTLIAHDWNELPESEKERYYKLQIEDRQRYEREHEEAYGFPAPKSRHQ
SPEVSLST*
Coding >Pro_DTO377G3_2|g4842.t1
ATGACTTGGCAGTCTGCAGCTCGGGGGGGCTTCCTCCGCACCCTGCACCGCGGTGCTCTCCCTCCCCGTACTGGC
GTGAACGACTTGCAGAATCAGCTTAGTCGCATCTGTCTAACCGTTAACTCTGGGTCGATGCGTCCGCAAGCCCAA
CCCGTTTCCTCCATCCGTTCCCTATTCCAGTCTAATTCATTCGCTACTGCTTCTACCCCTCCCAAGGCGACTAAG
ACGCCTAAGGCGAAGAGCACCAAAAAAGCCGGCATCAAAGCGAAGAAGCCGCATCTCACCGAGGCACAACAGGAA
AATCGGAAGATCAAGCAACTCCGGGCTCAGATCAGAGAACTCAAGGCGACTGCCCTGATCCGCCCGCCTAAGAAG
CTGCCTACCTCTGCTTACAGTCTTGCTTTGTCTGAGAAGCTGCGCGCGATCAAAGGTCAATACCCGGTCAAGGAA
GCTTTTATGATTGGCGTAGAGCATTCCACATCCCTCAATCCTCAAGATGAGGAGAGACTCCAAGCCCAGGCTAAG
GTGAACATAGCTGCTAACGCTGTTGCCTACGAGTCGTGGGTCAAGTCGCACACTCCCCTTCAGATCAAGGATGCC
AACACTGCCCGCCTATCCCTTTCACGTCTTGTCGACAAGAACTACCCTTCCATCAAAGATGACCGTCTACCCAAA
CTCCCGAAATCTGCCTACCTCTTATACTTGGGAGACCGCCTCGAAACCATTGATTACCAGGGGAAGCCCGGAACA
GAGGCATTCACACTTATTGCCCACGATTGGAATGAACTACCCGAATCAGAGAAAGAACGCTACTACAAATTGCAA
ATCGAAGATCGCCAACGGTATGAGAGAGAGCACGAGGAGGCGTACGGATTCCCAGCACCCAAGAGCCGACATCAA
TCACCCGAAGTCTCGCTTTCAACCTGA
Transcript >Pro_DTO377G3_2|g4842.t1
ATGACTTGGCAGTCTGCAGCTCGGGGGGGCTTCCTCCGCACCCTGCACCGCGGTGCTCTCCCTCCCCGTACTGGC
GTGAACGACTTGCAGAATCAGCTTAGTCGCATCTGTCTAACCGTTAACTCTGGGTCGATGCGTCCGCAAGCCCAA
CCCGTTTCCTCCATCCGTTCCCTATTCCAGTCTAATTCATTCGCTACTGCTTCTACCCCTCCCAAGGCGACTAAG
ACGCCTAAGGCGAAGAGCACCAAAAAAGCCGGCATCAAAGCGAAGAAGCCGCATCTCACCGAGGCACAACAGGAA
AATCGGAAGATCAAGCAACTCCGGGCTCAGATCAGAGAACTCAAGGCGACTGCCCTGATCCGCCCGCCTAAGAAG
CTGCCTACCTCTGCTTACAGTCTTGCTTTGTCTGAGAAGCTGCGCGCGATCAAAGGTCAATACCCGGTCAAGGAA
GCTTTTATGATTGGCGTAGAGCATTCCACATCCCTCAATCCTCAAGATGAGGAGAGACTCCAAGCCCAGGCTAAG
GTGAACATAGCTGCTAACGCTGTTGCCTACGAGTCGTGGGTCAAGTCGCACACTCCCCTTCAGATCAAGGATGCC
AACACTGCCCGCCTATCCCTTTCACGTCTTGTCGACAAGAACTACCCTTCCATCAAAGATGACCGTCTACCCAAA
CTCCCGAAATCTGCCTACCTCTTATACTTGGGAGACCGCCTCGAAACCATTGATTACCAGGGGAAGCCCGGAACA
GAGGCATTCACACTTATTGCCCACGATTGGAATGAACTACCCGAATCAGAGAAAGAACGCTACTACAAATTGCAA
ATCGAAGATCGCCAACGGTATGAGAGAGAGCACGAGGAGGCGTACGGATTCCCAGCACCCAAGAGCCGACATCAA
TCACCCGAAGTCTCGCTTTCAACCTGA
Gene >Pro_DTO377G3_2|g4842.t1
ATGACTTGGCAGTCTGCAGCTCGGGGGGGCTTCCTCCGCACCCTGCACCGCGGTGCTCTCCCTCCCCGTACTGGC
GTGAACGACTTGCAGAATCAGCTTAGTCGCATCTGTCTAACCGTTAACTCTGGGTCGATGCGTCCGCAAGCCCAA
CCCGTTTCCTCCATCCGTTCCCTATTCCAGTCTAATTCATTCGCTACTGCTTCTACCCCTCCCAAGGCGACTAAG
ACGCCTAAGGCGAAGAGCACCAAAAAAGCCGGCATCAAAGCGAAGAAGCCGCATCTCACCGAGGCACAACAGGAA
AATCGGAAGATCAAGCAACTCCGGGCTCAGATCAGAGAACTCAAGGCGACTGCCCTGATCCGCCCGCCTAAGAAG
CTGCCTACCTCTGCTTACAGTCTTGCTTTGTCTGAGAAGCTGCGCGCGATCAAAGGTCAATACCCGGTCAAGGAA
GCTTTTATGATTGGCGTAGAGCATTCCACATCCCTCAATCCTCAAGATGAGGAGGTATGTGCCCTTGAGATTCTC
CGTATACGTCAGGAGCGATATACTGATCTCCCAAATCTAGAGACTCCAAGCCCAGGCTAAGGTGAACATAGCTGC
TAACGCTGTTGCCTACGAGTCGTGGGTCAAGTCGCACACTCCCCTTCAGATCAAGGATGCCAACACTGCCCGCCT
ATCCCTTTCACGTCTTGTCGACAAGAACTACCCTTCCATCAAAGATGACCGTCTACCCAAACTCCCGAAATCTGC
CTACCTCTTATACTTGGGAGACCGCCTCGAAACCATTGATTACCAGGGGAAGCCCGGAACAGAGGCATTCACACT
TATTGCCCACGATTGGAATGAACTACCCGAATCAGAGAAAGAAGTAAGGACACCGAGCAGAATTGATACATACCG
AATTGCACGTGCTGACTAGTAATCTAGCGCTACTACAAATTGCAAATCGAAGATCGCCAACGGTATGAGAGAGAG
CACGAGGAGGCGTACGGATTCCCAGCACCCAAGAGCCGACATCAATCACCCGAAGTCTCGCTTTCAACCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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