© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4826.t1 |
| Gene name | |
| Location | scaffold_10:500066..500936 |
| Strand | - |
| Gene length (bp) | 870 |
| Transcript length (bp) | 756 |
| Coding sequence length (bp) | 756 |
| Protein length (aa) | 252 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF10187 | FAM192A_Fyv6_N | FAM192A/Fyv6, N-terminal domain | 1.7E-31 | 5 | 109 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 46 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 52.84 | 28.00 | 77.69 |
| 5d_25C | Five days - 25 degrees Celsius | 64.51 | 35.50 | 93.53 |
| 7d_25C | Seven days - 25 degrees Celsius | 73.23 | 41.19 | 105.26 |
| 10d_25C | Ten days - 25 degrees Celsius | 69.82 | 38.99 | 100.65 |
| 7d_15C | Seven days - 15 degrees Celsius | 75.13 | 42.82 | 107.44 |
| 7d_30C | Seven days - 30 degrees Celsius | 64.09 | 35.32 | 92.86 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.520000 | no |
| 3d_25C | 7d_25C | 0.230934 | no |
| 3d_25C | 7d_15C | 0.178667 | no |
| 3d_25C | 7d_30C | 0.530108 | no |
| 3d_25C | 10d_25C | 0.321228 | no |
| 5d_25C | 7d_25C | 0.689705 | no |
| 5d_25C | 7d_15C | 0.615293 | no |
| 5d_25C | 7d_30C | 0.987835 | no |
| 5d_25C | 10d_25C | 0.819231 | no |
| 7d_25C | 7d_15C | 0.947118 | no |
| 7d_25C | 7d_30C | 0.675983 | no |
| 7d_25C | 10d_25C | 0.895919 | no |
| 7d_15C | 7d_30C | 0.595567 | no |
| 7d_15C | 10d_25C | 0.829139 | no |
| 7d_30C | 10d_25C | 0.802431 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4826.t1 MSSGFVSSGTNEKPIERDDEWLRVQQELEEERRRKAEIGKQDEGKSLFEVLERNKMAKQEAFEEKSRLKNQFRSL DEDEVDFLDSVLESTRAQEAAVKRETAEQLESFRRQREKAQKALLESTSSEAPIQGEEWTALARKRRSDKHKNSL IAGKKRKASVTEITAEKDTQNGKDSQKQPGSGISSTKKLDQGTSKSDQATPAASATSPETTNTATQPKVVTDTEE GQIKSKIPTKPVPVSLGLAGYSSDSE* |
| Coding | >Pro_DTO377G3_2|g4826.t1 ATGTCATCGGGTTTCGTTTCATCCGGAACAAATGAGAAGCCGATCGAGCGGGACGATGAGTGGCTTAGAGTGCAG CAGGAGCTAGAGGAGGAGCGGAGACGGAAGGCCGAAATAGGGAAGCAGGATGAGGGCAAAAGTCTCTTCGAGGTG CTGGAGCGCAATAAAATGGCCAAACAAGAAGCCTTTGAAGAGAAATCGCGTCTCAAAAACCAGTTTCGATCCCTG GATGAAGATGAAGTCGACTTCCTGGATTCTGTTCTCGAGTCAACACGTGCCCAGGAGGCTGCTGTGAAGAGGGAG ACAGCGGAACAACTTGAATCCTTCCGCCGACAGCGCGAGAAGGCGCAGAAAGCATTGCTTGAATCAACCTCGTCG GAGGCACCCATACAAGGAGAAGAATGGACCGCACTGGCTCGCAAGAGACGGAGCGATAAACACAAGAACTCATTG ATTGCAGGGAAGAAGCGTAAAGCTTCAGTCACCGAGATTACTGCTGAGAAGGACACACAGAATGGGAAAGACTCG CAGAAACAGCCTGGATCTGGTATTTCAAGTACCAAGAAGCTGGATCAAGGGACTTCCAAGTCCGATCAAGCCACA CCTGCTGCTTCTGCCACATCACCCGAAACCACAAATACTGCCACACAGCCCAAGGTGGTAACAGACACAGAGGAG GGGCAAATAAAGTCCAAAATCCCGACAAAACCAGTCCCAGTTTCGCTTGGCTTGGCAGGATACAGCTCAGATTCT GAATGA |
| Transcript | >Pro_DTO377G3_2|g4826.t1 ATGTCATCGGGTTTCGTTTCATCCGGAACAAATGAGAAGCCGATCGAGCGGGACGATGAGTGGCTTAGAGTGCAG CAGGAGCTAGAGGAGGAGCGGAGACGGAAGGCCGAAATAGGGAAGCAGGATGAGGGCAAAAGTCTCTTCGAGGTG CTGGAGCGCAATAAAATGGCCAAACAAGAAGCCTTTGAAGAGAAATCGCGTCTCAAAAACCAGTTTCGATCCCTG GATGAAGATGAAGTCGACTTCCTGGATTCTGTTCTCGAGTCAACACGTGCCCAGGAGGCTGCTGTGAAGAGGGAG ACAGCGGAACAACTTGAATCCTTCCGCCGACAGCGCGAGAAGGCGCAGAAAGCATTGCTTGAATCAACCTCGTCG GAGGCACCCATACAAGGAGAAGAATGGACCGCACTGGCTCGCAAGAGACGGAGCGATAAACACAAGAACTCATTG ATTGCAGGGAAGAAGCGTAAAGCTTCAGTCACCGAGATTACTGCTGAGAAGGACACACAGAATGGGAAAGACTCG CAGAAACAGCCTGGATCTGGTATTTCAAGTACCAAGAAGCTGGATCAAGGGACTTCCAAGTCCGATCAAGCCACA CCTGCTGCTTCTGCCACATCACCCGAAACCACAAATACTGCCACACAGCCCAAGGTGGTAACAGACACAGAGGAG GGGCAAATAAAGTCCAAAATCCCGACAAAACCAGTCCCAGTTTCGCTTGGCTTGGCAGGATACAGCTCAGATTCT GAATGA |
| Gene | >Pro_DTO377G3_2|g4826.t1 ATGTCATCGGGTTTCGTTTCATCCGGAACAAATGAGAAGCCGATCGAGCGGGACGATGAGTGGCTTAGAGTGCAG CAGGAGCTAGAGGAGGAGCGGAGACGGAAGGCCGAAATAGGGAAGCAGGATGAGGGCAAAAGTCTCTTCGAGGTG CTGGAGCGCAATAAAAGTGAGCCCAACTCGGATACCTGGCCCCCGTCTGCGCGAACAAAGAAGAGTAGTGGACAA TTCATCCGGGAATCTGGCTAACATGTTAGGGTGATTTTCCTCGGTTATCATACAGTGGCCAAACAAGAAGCCTTT GAAGAGAAATCGCGTCTCAAAAACCAGTTTCGATCCCTGGATGAAGATGAAGTCGACTTCCTGGATTCTGTTCTC GAGTCAACACGTGCCCAGGAGGCTGCTGTGAAGAGGGAGACAGCGGAACAACTTGAATCCTTCCGCCGACAGCGC GAGAAGGCGCAGAAAGCATTGCTTGAATCAACCTCGTCGGAGGCACCCATACAAGGAGAAGAATGGACCGCACTG GCTCGCAAGAGACGGAGCGATAAACACAAGAACTCATTGATTGCAGGGAAGAAGCGTAAAGCTTCAGTCACCGAG ATTACTGCTGAGAAGGACACACAGAATGGGAAAGACTCGCAGAAACAGCCTGGATCTGGTATTTCAAGTACCAAG AAGCTGGATCAAGGGACTTCCAAGTCCGATCAAGCCACACCTGCTGCTTCTGCCACATCACCCGAAACCACAAAT ACTGCCACACAGCCCAAGGTGGTAACAGACACAGAGGAGGGGCAAATAAAGTCCAAAATCCCGACAAAACCAGTC CCAGTTTCGCTTGGCTTGGCAGGATACAGCTCAGATTCTGAATGA |