© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4824.t1 |
| Gene name | |
| Location | scaffold_10:497920..499135 |
| Strand | + |
| Gene length (bp) | 1215 |
| Transcript length (bp) | 885 |
| Coding sequence length (bp) | 885 |
| Protein length (aa) | 295 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00083 | Sugar_tr | Sugar (and other) transporter | 2.8E-58 | 14 | 274 |
| PF07690 | MFS_1 | Major Facilitator Superfamily | 1.5E-23 | 17 | 283 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 13 | 35 | 22 |
| 2 | 50 | 72 | 22 |
| 3 | 81 | 103 | 22 |
| 4 | 108 | 127 | 19 |
| 5 | 140 | 162 | 22 |
| 6 | 172 | 194 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4824.t1 MRLSPSWYQFLVGVFASLGSFLYGYDLGVIAEVLVCQSFKAKFEADDTQTGLVVSLFTAGACIGAGLAGASGDHL GRRRTISLGCFIFTLGGGLQTGARTIAYLYSGRFLAGLGVGFLTMMIPLYQAEICHPSIRGRVTALQQFMLGIGA LCATWIGYGTYTGFAEDNNAQWQLPLGLQIAPAVFLGLLISFFPESPRWLIDHNRTEEGLRTLAKLHAHGNENDA WVQAEFAQIQESITFEHENEAKSYVELLTNRSSFRRLFLCCALQASILLTSDLWSNRYLQRRHPEVSGN* |
| Coding | >Pro_DTO377G3_2|g4824.t1 ATGCGTCTCTCGCCGTCGTGGTACCAGTTCCTGGTCGGTGTCTTTGCCTCTCTTGGATCATTCCTTTATGGATAT GATCTGGGTGTAATCGCTGAGGTGCTCGTCTGCCAATCATTTAAAGCCAAATTCGAGGCAGATGATACCCAAACA GGATTAGTCGTGTCTTTATTCACGGCTGGCGCATGCATCGGTGCCGGACTTGCGGGCGCCAGTGGTGATCATTTA GGTAGACGACGGACCATCTCATTGGGATGTTTCATCTTCACTCTCGGAGGTGGTCTTCAGACCGGTGCGAGGACA ATTGCCTATCTATACAGCGGACGATTCCTGGCCGGGTTAGGTGTCGGTTTCCTCACAATGATGATTCCTCTATAC CAAGCCGAGATCTGTCACCCCAGCATCCGTGGTCGAGTTACGGCCTTGCAGCAATTTATGCTCGGTATTGGAGCG CTCTGCGCTACATGGATTGGTTATGGAACATACACCGGCTTTGCAGAGGATAACAATGCGCAATGGCAACTGCCT CTCGGTTTGCAAATTGCCCCTGCTGTATTTTTGGGTCTTTTGATCTCTTTCTTCCCTGAGTCGCCTCGATGGCTT ATTGACCACAACCGCACCGAAGAGGGATTGCGCACATTGGCCAAGTTGCATGCGCATGGTAACGAAAACGATGCT TGGGTCCAGGCAGAATTCGCTCAAATTCAGGAGAGCATCACGTTTGAGCATGAGAACGAGGCGAAGTCATATGTC GAGTTGTTGACCAATCGCTCCTCGTTCCGTCGGTTGTTCCTCTGCTGTGCATTGCAAGCCTCAATACTACTCACC TCAGATTTATGGTCAAATCGGTATCTCCAACGAAGACACCCTGAAGTATCAGGCAATTAA |
| Transcript | >Pro_DTO377G3_2|g4824.t1 ATGCGTCTCTCGCCGTCGTGGTACCAGTTCCTGGTCGGTGTCTTTGCCTCTCTTGGATCATTCCTTTATGGATAT GATCTGGGTGTAATCGCTGAGGTGCTCGTCTGCCAATCATTTAAAGCCAAATTCGAGGCAGATGATACCCAAACA GGATTAGTCGTGTCTTTATTCACGGCTGGCGCATGCATCGGTGCCGGACTTGCGGGCGCCAGTGGTGATCATTTA GGTAGACGACGGACCATCTCATTGGGATGTTTCATCTTCACTCTCGGAGGTGGTCTTCAGACCGGTGCGAGGACA ATTGCCTATCTATACAGCGGACGATTCCTGGCCGGGTTAGGTGTCGGTTTCCTCACAATGATGATTCCTCTATAC CAAGCCGAGATCTGTCACCCCAGCATCCGTGGTCGAGTTACGGCCTTGCAGCAATTTATGCTCGGTATTGGAGCG CTCTGCGCTACATGGATTGGTTATGGAACATACACCGGCTTTGCAGAGGATAACAATGCGCAATGGCAACTGCCT CTCGGTTTGCAAATTGCCCCTGCTGTATTTTTGGGTCTTTTGATCTCTTTCTTCCCTGAGTCGCCTCGATGGCTT ATTGACCACAACCGCACCGAAGAGGGATTGCGCACATTGGCCAAGTTGCATGCGCATGGTAACGAAAACGATGCT TGGGTCCAGGCAGAATTCGCTCAAATTCAGGAGAGCATCACGTTTGAGCATGAGAACGAGGCGAAGTCATATGTC GAGTTGTTGACCAATCGCTCCTCGTTCCGTCGGTTGTTCCTCTGCTGTGCATTGCAAGCCTCAATACTACTCACC TCAGATTTATGGTCAAATCGGTATCTCCAACGAAGACACCCTGAAGTATCAGGCAATTAA |
| Gene | >Pro_DTO377G3_2|g4824.t1 ATGCGTCTCTCGCCGTCGTGGTACCAGGTATGAAGGGACCACTGCATTGAGAAGACGGAGCTCATGCTTTGATAT AGTTCCTGGTCGGTGTCTTTGCCTCTCTTGGATCATTCCTTTATGGATGTATGTCACCAATTCCCTACGTGACAC GCGGAATCTAATAAATTCGCAGATGATCTGGGTGTAATCGCTGAGGTGCTCGTCTGCCAATCATTTAAAGCCAAA TTCGAGGCAGATGATACCCAAACGTCAGTCCCATAACATATGGAATATGGGAATATCTAACGACTTTGCAGAGGA TTAGTCGTGTCTTTATTCACGGCTGGCGCATGCATCGGTGCCGGACTTGCGGGCGCCAGTGGTGATCATTTAGGT AGACGACGGACCATCTCATTGGGATGTTTCATCTTCACTCTCGGAGGTGGTCTTCAGACCGGTGCGAGGACAATT GCCTATCTATACAGCGGACGATTCCTGGCCGGGTTAGGGTATGTGATTTCTCTCAAAACAGATACCCCAATAAGC ACTAATCAGATTAATTCTTAGTGTCGGTTTCCTCACAATGATGATTCCTCTATACCAAGCCGAGATCTGTCACCC CAGCATCCGTGGTCGAGTTACGGCCTTGCAGCAATTTATGCTCGGTATTGGAGCGCTCTGCGCTACATGGATTGG TTATGGAACATACACCGGCTTTGCAGAGGATAACAATGCGCAATGGCAACTGCCTCTCGGTTTGCAAATTGCCCC TGCTGTATTTTTGGGTCTTTTGATCTCTTTCTTCCCTGAGGTAGGGTCTGATTTCCATCGGGTGAACTCCAATAA CTGATGTTTATCCAGTCGCCTCGATGGCTTATTGACCACAACCGCACCGAAGAGGGATTGCGCACATTGGCCAAG TTGCATGCGCATGGTAACGAAAACGATGCTTGGGTCCAGGCAGAATTCGCTCAAATTCAGGAGAGCATCACGTTT GAGCATGAGAACGAGGCGAAGTCATATGTCGAGTTGTTGACCAATCGCTCCTCGTTCCGTCGGTTGTTCCTCTGC TGTGCATTGCAAGCCTCAGTAAGTGTACAATGACTTACCACTGCCAAGATATGTCAGCATAGAATCAATCAGCTA ATATGATTTCGTGCATAGATACTACTCACCTCAGATTTATGGTCAAATCGGTATCTCCAACGAAGACACCCTGAA GTATCAGGCAATTAA |