© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g482.t1 |
| Gene name | |
| Location | scaffold_01:1219532..1221457 |
| Strand | + |
| Gene length (bp) | 1925 |
| Transcript length (bp) | 1740 |
| Coding sequence length (bp) | 1740 |
| Protein length (aa) | 580 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 2.7E-36 | 114 | 491 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 47 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 165 | 187 | 22 |
| 2 | 200 | 222 | 22 |
| 3 | 237 | 259 | 22 |
| 4 | 271 | 290 | 19 |
| 5 | 343 | 365 | 22 |
| 6 | 378 | 397 | 19 |
| 7 | 407 | 429 | 22 |
| 8 | 442 | 464 | 22 |
| 9 | 502 | 524 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 33.46 | 19.21 | 47.71 |
| 5d_25C | Five days - 25 degrees Celsius | 37.25 | 21.72 | 52.78 |
| 7d_25C | Seven days - 25 degrees Celsius | 39.34 | 22.88 | 55.81 |
| 10d_25C | Ten days - 25 degrees Celsius | 34.58 | 20.10 | 49.07 |
| 7d_15C | Seven days - 15 degrees Celsius | 34.93 | 19.16 | 50.70 |
| 7d_30C | Seven days - 30 degrees Celsius | 40.02 | 23.01 | 57.03 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.733803 | no |
| 3d_25C | 7d_25C | 0.573808 | no |
| 3d_25C | 7d_15C | 0.908130 | no |
| 3d_25C | 7d_30C | 0.530648 | no |
| 3d_25C | 10d_25C | 0.929915 | no |
| 5d_25C | 7d_25C | 0.876978 | no |
| 5d_25C | 7d_15C | 0.854888 | no |
| 5d_25C | 7d_30C | 0.832420 | no |
| 5d_25C | 10d_25C | 0.821043 | no |
| 7d_25C | 7d_15C | 0.704266 | no |
| 7d_25C | 7d_30C | 0.966004 | no |
| 7d_25C | 10d_25C | 0.668422 | no |
| 7d_15C | 7d_30C | 0.659233 | no |
| 7d_15C | 10d_25C | 0.979856 | no |
| 7d_30C | 10d_25C | 0.619375 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g482.t1 MADLHPSAAGNNASSTSSSTSSNPRFTPVSYTSDEENPVPGTAESPVGSLRLQTNFDDHQDVGDPLSDFENDGNY NTSEEREGKIPRGGLGPRYTPEEESEVVRRFDRRLVPFLALLYLLSFLDRSNIGNAKIAGLQDDLQLSSSQYEWL LTAFYITYILFEWMTLMYRVVPPHIYISLCVCGWGLVASFQCLATSFGGLVVLRALLGITEAAFGPGVPFYLSLF YRRHELAFRNGLFISAAPLATSFASSLAYLIVRFSSDGPISPWRTLFLVEGFPSVIVAVFAWFLIPDSPGRARFL SRRQRVVAQQRLEESKTDYKQSYGSQFNWREILKTAADPKAYIAAFMFFSCNVAFSSMPVFLPTIIKDMGYSSLQ AQALSAPPYLVAFVVVLLTAYASDRSRSRSPYLIAHALISSLAYLAIAATGYFHSGLSPWLHTFIRYICVYPATA GFFSAITIIITWAMDNRVEKEGKGASIAILNIIRQCGPLLGTRLYPETDGPWYIRGMATCSFFMFVVAILAVVLR VLLQRMNRAVAETTYNIAQAGPVDQGEERDVLMGGGRRDDLENSTGDRRLVYII* |
| Coding | >Pro_DTO377G3_2|g482.t1 ATGGCAGACCTTCATCCCTCCGCCGCGGGGAATAATGCATCTTCCACTAGCTCCAGCACATCCTCAAACCCACGA TTCACTCCAGTTTCTTATACCTCAGACGAAGAAAACCCAGTGCCAGGGACTGCAGAATCACCCGTAGGCTCATTG CGACTGCAGACCAACTTCGATGACCACCAAGACGTTGGCGACCCTCTATCCGATTTCGAGAACGACGGCAACTAT AACACAAGTGAGGAACGAGAGGGCAAGATTCCACGCGGCGGCTTGGGTCCGAGATATACACCGGAGGAGGAGAGC GAGGTAGTGAGGAGATTTGACCGAAGGCTCGTCCCGTTTCTGGCACTTCTCTACTTGCTCTCCTTCTTGGACCGC TCCAACATTGGAAATGCAAAGATAGCAGGACTCCAAGACGATCTACAACTTTCATCTTCGCAATATGAATGGCTA CTTACTGCTTTTTACATTACCTACATTCTCTTCGAATGGATGACGCTGATGTACCGTGTTGTTCCCCCGCATATT TATATATCCCTATGTGTATGTGGATGGGGACTAGTCGCATCATTTCAGTGTCTAGCTACTTCCTTTGGGGGCCTG GTCGTTCTCCGGGCATTGCTTGGAATCACCGAGGCGGCTTTTGGCCCCGGTGTTCCGTTTTACCTGTCTTTGTTC TATCGCAGACATGAGCTGGCTTTCCGCAATGGATTGTTTATCTCAGCGGCACCGCTCGCAACATCTTTTGCGAGT AGTTTGGCCTACTTGATTGTCAGGTTCAGCAGTGACGGCCCGATCTCACCGTGGCGAACTCTCTTCCTCGTGGAG GGGTTCCCGAGTGTAATTGTTGCGGTATTTGCTTGGTTTCTGATTCCGGACTCTCCTGGTCGGGCTCGATTCCTG AGTCGCCGACAAAGGGTGGTAGCTCAGCAGCGTCTCGAAGAGAGCAAAACCGACTATAAGCAATCGTATGGGAGT CAATTTAACTGGCGAGAAATCCTGAAAACTGCAGCGGACCCCAAGGCTTATATTGCTGCCTTTATGTTTTTCAGT TGCAACGTTGCTTTCAGCTCAATGCCTGTCTTTTTGCCTACTATCATCAAAGATATGGGATACTCCTCCTTACAA GCCCAAGCCCTCTCAGCACCTCCCTATCTCGTTGCCTTTGTTGTAGTCCTCCTCACTGCATACGCCTCAGATCGC AGCCGCTCCCGAAGCCCATACCTAATAGCGCACGCTCTCATCTCCTCACTCGCTTACTTAGCGATCGCAGCAACT GGTTATTTCCACTCCGGGCTGTCACCATGGCTTCACACATTCATCCGCTACATCTGCGTCTACCCCGCCACGGCG GGGTTCTTTTCCGCAATCACCATCATCATTACATGGGCAATGGATAACCGTGTCGAAAAGGAAGGCAAGGGCGCA AGCATTGCCATTCTCAATATCATCAGACAATGTGGACCCCTGCTCGGGACGAGACTGTATCCCGAGACTGACGGG CCGTGGTATATTCGGGGCATGGCTACGTGTTCGTTTTTCATGTTTGTTGTTGCTATATTGGCGGTGGTACTGCGG GTTCTTCTACAGAGGATGAATCGGGCGGTTGCGGAAACGACCTATAATATTGCACAGGCTGGCCCTGTTGATCAG GGTGAGGAGCGGGATGTGCTCATGGGAGGTGGGAGGAGGGATGATTTGGAGAATTCCACTGGGGATAGAAGGCTT GTATATATCATATAG |
| Transcript | >Pro_DTO377G3_2|g482.t1 ATGGCAGACCTTCATCCCTCCGCCGCGGGGAATAATGCATCTTCCACTAGCTCCAGCACATCCTCAAACCCACGA TTCACTCCAGTTTCTTATACCTCAGACGAAGAAAACCCAGTGCCAGGGACTGCAGAATCACCCGTAGGCTCATTG CGACTGCAGACCAACTTCGATGACCACCAAGACGTTGGCGACCCTCTATCCGATTTCGAGAACGACGGCAACTAT AACACAAGTGAGGAACGAGAGGGCAAGATTCCACGCGGCGGCTTGGGTCCGAGATATACACCGGAGGAGGAGAGC GAGGTAGTGAGGAGATTTGACCGAAGGCTCGTCCCGTTTCTGGCACTTCTCTACTTGCTCTCCTTCTTGGACCGC TCCAACATTGGAAATGCAAAGATAGCAGGACTCCAAGACGATCTACAACTTTCATCTTCGCAATATGAATGGCTA CTTACTGCTTTTTACATTACCTACATTCTCTTCGAATGGATGACGCTGATGTACCGTGTTGTTCCCCCGCATATT TATATATCCCTATGTGTATGTGGATGGGGACTAGTCGCATCATTTCAGTGTCTAGCTACTTCCTTTGGGGGCCTG GTCGTTCTCCGGGCATTGCTTGGAATCACCGAGGCGGCTTTTGGCCCCGGTGTTCCGTTTTACCTGTCTTTGTTC TATCGCAGACATGAGCTGGCTTTCCGCAATGGATTGTTTATCTCAGCGGCACCGCTCGCAACATCTTTTGCGAGT AGTTTGGCCTACTTGATTGTCAGGTTCAGCAGTGACGGCCCGATCTCACCGTGGCGAACTCTCTTCCTCGTGGAG GGGTTCCCGAGTGTAATTGTTGCGGTATTTGCTTGGTTTCTGATTCCGGACTCTCCTGGTCGGGCTCGATTCCTG AGTCGCCGACAAAGGGTGGTAGCTCAGCAGCGTCTCGAAGAGAGCAAAACCGACTATAAGCAATCGTATGGGAGT CAATTTAACTGGCGAGAAATCCTGAAAACTGCAGCGGACCCCAAGGCTTATATTGCTGCCTTTATGTTTTTCAGT TGCAACGTTGCTTTCAGCTCAATGCCTGTCTTTTTGCCTACTATCATCAAAGATATGGGATACTCCTCCTTACAA GCCCAAGCCCTCTCAGCACCTCCCTATCTCGTTGCCTTTGTTGTAGTCCTCCTCACTGCATACGCCTCAGATCGC AGCCGCTCCCGAAGCCCATACCTAATAGCGCACGCTCTCATCTCCTCACTCGCTTACTTAGCGATCGCAGCAACT GGTTATTTCCACTCCGGGCTGTCACCATGGCTTCACACATTCATCCGCTACATCTGCGTCTACCCCGCCACGGCG GGGTTCTTTTCCGCAATCACCATCATCATTACATGGGCAATGGATAACCGTGTCGAAAAGGAAGGCAAGGGCGCA AGCATTGCCATTCTCAATATCATCAGACAATGTGGACCCCTGCTCGGGACGAGACTGTATCCCGAGACTGACGGG CCGTGGTATATTCGGGGCATGGCTACGTGTTCGTTTTTCATGTTTGTTGTTGCTATATTGGCGGTGGTACTGCGG GTTCTTCTACAGAGGATGAATCGGGCGGTTGCGGAAACGACCTATAATATTGCACAGGCTGGCCCTGTTGATCAG GGTGAGGAGCGGGATGTGCTCATGGGAGGTGGGAGGAGGGATGATTTGGAGAATTCCACTGGGGATAGAAGGCTT GTATATATCATATAG |
| Gene | >Pro_DTO377G3_2|g482.t1 ATGGCAGACCTTCATCCCTCCGCCGCGGGGAATAATGCATCTTCCACTAGCTCCAGCACATCCTCAAACCCACGA TTCACTCCAGTTTCTTATACCTCAGACGAAGAAAACCCAGTGCCAGGGACTGCAGAATCACCCGTAGGCTCATTG CGACTGCAGACCAACTTCGATGACCACCAAGACGTTGGCGACCCTCTATCCGATTTCGAGAACGACGGCAACTAT AACACAAGTGAGGAACGAGAGGGCAAGATTCCACGCGGCGGCTTGGGTCCGAGATATACACCGGAGGAGGAGAGC GAGGTAGTGAGGAGATTTGACCGAAGGCTCGTCCCGTTTCTGGCACTTCTCTACTTGCTCTCCTTCTTGGACCGC TCCAGTATGTTTGGTTATTCCGCACAGCGCAGTGCTCTCCCTATTGTTACAAGCATGTACTGATCGGGTATGCAG ACATTGGAAATGCAAAGATAGCAGGACTCCAAGACGATCTACAACTTTCATCTTCGCAATATGAATGGCTACTTA CTGCTTTTTACATTACCTACATTCTCTTCGAATGGATGACGCTGATGTACCGTGTTGTTCCCCCGCATATTTATA TATCCCTATGTGTATGTGGATGGGGACTAGTCGCATCATTTCAGTGTCTAGCTACTTCCTTTGGGGGCCTGGTCG TTCTCCGGGCATTGCTTGGAATCACCGAGGCGGCTTTTGGCCCCGGTGTTCCGTTTTACCTGTCTTTGTTCTATC GCAGACATGAGCTGGCTTTCCGCAATGGATTGTTTATCTCAGCGGCACCGCTCGCAACATCTTTTGCGAGTAGTT TGGCCTACTTGATTGTCAGGTTCAGCAGTGACGGCCCGATCTCACCGTGGCGAACTCTCTTCCTCGTGGAGGGGT TCCCGAGTGTAATTGTTGCGGTATTTGCTTGGTTTCTGATTCCGGACTCTCCTGGTCGGGCTCGATTCCTGAGTC GCCGACAAAGGGTGGTAGCTCAGCAGCGTCTCGAAGAGAGCAAAACCGACTATAAGCAATCGTATGGGAGTCAAT TTAACTGGCGAGAAATCCTGAAAACTGCAGCGGACCCCAAGGCTTATATTGCTGCCGTGAGTCTTTATCTATATT TGAGATTGTACAAAGGGTTTTAACACATTTACTACAGTTTATGTTTTTCAGTTGCAACGTTGCTTTCAGCTCAAT GCCTGTCTTTTTGCCTACTATCATCAAAGAGTATGCCCGTCGCCAGCATCTATTCACAATCTCAACAGCCAGCTT ACATCTCTTATAGTATGGGATACTCCTCCTTACAAGCCCAAGCCCTCTCAGCACCTCCCTATCTCGTTGCCTTTG TTGTAGTCCTCCTCACTGCATACGCCTCAGATCGCAGCCGCTCCCGAAGCCCATACCTAATAGCGCACGCTCTCA TCTCCTCACTCGCTTACTTAGCGATCGCAGCAACTGGTTATTTCCACTCCGGGCTGTCACCATGGCTTCACACAT TCATCCGCTACATCTGCGTCTACCCCGCCACGGCGGGGTTCTTTTCCGCAATCACCATCATCATTACATGGGCAA TGGATAACCGTGTCGAAAAGGAAGGCAAGGGCGCAAGCATTGCCATTCTCAATATCATCAGACAATGTGGACCCC TGCTCGGGACGAGACTGTATCCCGAGACTGACGGGCCGTGGTATATTCGGGGCATGGCTACGTGTTCGTTTTTCA TGTTTGTTGTTGCTATATTGGCGGTGGTACTGCGGGTTCTTCTACAGAGGATGAATCGGGCGGTTGCGGAAACGA CCTATAATATTGCACAGGCTGGCCCTGTTGATCAGGGTGAGGAGCGGGATGTGCTCATGGGAGGTGGGAGGAGGG ATGATTTGGAGAATTCCACTGGGGATAGAAGGCTTGTATATATCATATAG |