© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g4810.t1 |
| Gene name | |
| Location | scaffold_10:459618..461184 |
| Strand | - |
| Gene length (bp) | 1566 |
| Transcript length (bp) | 1455 |
| Coding sequence length (bp) | 1455 |
| Protein length (aa) | 485 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02803 | Thiolase_C | Thiolase, C-terminal domain | 6.3E-10 | 287 | 388 |
| PF00108 | Thiolase_N | Thiolase, N-terminal domain | 1.6E-09 | 6 | 121 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016747 | acyltransferase activity, transferring groups other than amino-acyl groups | Yes |
| GO:0016746 | acyltransferase activity | No |
| GO:0016740 | transferase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 25 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 1.66 | 0.21 | 3.10 |
| 5d_25C | Five days - 25 degrees Celsius | 1.76 | 0.26 | 3.27 |
| 7d_25C | Seven days - 25 degrees Celsius | 2.69 | 0.64 | 4.73 |
| 10d_25C | Ten days - 25 degrees Celsius | 1.42 | 0.15 | 2.69 |
| 7d_15C | Seven days - 15 degrees Celsius | 4.07 | 1.24 | 6.90 |
| 7d_30C | Seven days - 30 degrees Celsius | 1.81 | 0.30 | 3.32 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.934061 | no |
| 3d_25C | 7d_25C | 0.353469 | no |
| 3d_25C | 7d_15C | 0.043601 | yes |
| 3d_25C | 7d_30C | 0.902542 | no |
| 3d_25C | 10d_25C | 0.823502 | no |
| 5d_25C | 7d_25C | 0.435401 | no |
| 5d_25C | 7d_15C | 0.060739 | no |
| 5d_25C | 7d_30C | 0.974072 | no |
| 5d_25C | 10d_25C | 0.739466 | no |
| 7d_25C | 7d_15C | 0.356796 | no |
| 7d_25C | 7d_30C | 0.462412 | no |
| 7d_25C | 10d_25C | 0.187531 | no |
| 7d_15C | 7d_30C | 0.066653 | no |
| 7d_15C | 10d_25C | 0.014377 | yes |
| 7d_30C | 10d_25C | 0.704059 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4810.t1 MTASPVYIVGVGMTPFQSPKKSAATSSNPEGDYFNLAVSACVKALLDAGINYDDVDQGVGCYVFGDSAGAQRVFY TLGMTGVPIYNVHNYCSAGSTGLYMANQFIQAGSADCVLVVGFDKMYPGALPQIYKDRENPLGRILALSKRFIPE GQAESAGWTPQLYANAQAEYLEKYGSNGAKAEHFAAIASTNRTHGMNNPYSQLRQSVTTKEVSSSPQVSGSITRL QCCPSSTGAAATVLVSERFLQAHPYLKGSAIAIRGQALATDSRDLYEPASAIELIGSNMTRRAAQNAFKQASLSP KDIQVIELHDCFTTNEMCAIEDLGLAPHGEGWKLVAGGGITYDQSSKTKRTSPGWIINPSGGLISKGHPLGATGL AQTAELVWHLRGWASNRCVPQTKYCLQHNMGLGGATVVTVLGRADDKVAPLSSEIQDQVDGRRRLGYNPALEARG VNKQDIEAVKSRKAFSNWAADTFEALGNPREVRL* |
| Coding | >Pro_DTO377G3_2|g4810.t1 ATGACTGCCTCCCCAGTATACATCGTCGGTGTGGGGATGACCCCATTTCAGTCTCCCAAAAAATCAGCTGCAACC TCCTCCAATCCCGAGGGAGATTATTTCAACCTCGCCGTATCCGCATGTGTGAAAGCTTTACTCGATGCCGGAATC AACTATGATGATGTTGATCAGGGAGTTGGGTGTTATGTGTTTGGTGACTCTGCTGGCGCACAGCGTGTTTTCTAC ACCCTGGGGATGACTGGAGTTCCCATTTACAATGTTCATAACTACTGCAGCGCAGGGAGTACGGGCCTGTATATG GCCAATCAGTTTATTCAGGCCGGCAGTGCTGATTGTGTCCTTGTGGTGGGATTTGACAAAATGTATCCTGGTGCT CTTCCACAGATTTATAAGGATAGGGAGAATCCCCTGGGAAGAATTCTGGCTCTTTCGAAGCGTTTTATTCCCGAA GGTCAAGCAGAATCAGCTGGCTGGACACCTCAGCTATATGCCAACGCCCAAGCTGAGTACCTGGAAAAATACGGG TCGAACGGAGCAAAAGCAGAGCATTTCGCCGCTATTGCCTCCACTAACCGTACGCATGGCATGAACAATCCATAC AGTCAGCTGCGTCAGTCTGTGACGACCAAGGAAGTTTCATCGAGTCCACAGGTGTCGGGATCGATTACTCGGCTA CAATGCTGTCCATCCTCGACCGGAGCTGCCGCCACGGTCCTAGTGTCGGAGCGTTTCCTGCAAGCTCATCCCTAC CTGAAGGGAAGCGCAATTGCCATTAGGGGCCAAGCCCTTGCAACTGACTCTCGGGATTTGTATGAGCCCGCGAGC GCCATCGAGCTGATTGGGTCCAATATGACAAGACGTGCTGCCCAGAATGCCTTCAAGCAGGCTTCACTATCACCC AAAGATATCCAAGTGATTGAGCTGCATGATTGCTTTACGACAAACGAGATGTGTGCGATCGAAGACTTGGGCCTA GCTCCACACGGCGAAGGGTGGAAGCTGGTCGCCGGTGGAGGCATCACGTATGATCAAAGTTCTAAAACGAAAAGA ACGTCTCCAGGATGGATCATCAATCCCAGTGGCGGATTGATTTCCAAGGGTCATCCGCTGGGAGCGACAGGCCTT GCTCAAACGGCCGAGTTAGTATGGCATCTACGTGGCTGGGCATCAAACCGTTGTGTACCGCAGACCAAATACTGC CTGCAGCACAACATGGGCCTCGGGGGTGCTACAGTTGTCACTGTTTTAGGTCGTGCCGATGACAAAGTTGCACCC TTGTCGTCTGAAATCCAGGATCAGGTTGACGGACGACGACGTCTCGGATATAACCCAGCTCTGGAGGCAAGGGGA GTAAACAAGCAGGATATCGAGGCCGTGAAATCTCGAAAGGCATTTAGTAATTGGGCTGCCGACACATTCGAAGCT CTGGGAAATCCACGTGAAGTTAGATTGTGA |
| Transcript | >Pro_DTO377G3_2|g4810.t1 ATGACTGCCTCCCCAGTATACATCGTCGGTGTGGGGATGACCCCATTTCAGTCTCCCAAAAAATCAGCTGCAACC TCCTCCAATCCCGAGGGAGATTATTTCAACCTCGCCGTATCCGCATGTGTGAAAGCTTTACTCGATGCCGGAATC AACTATGATGATGTTGATCAGGGAGTTGGGTGTTATGTGTTTGGTGACTCTGCTGGCGCACAGCGTGTTTTCTAC ACCCTGGGGATGACTGGAGTTCCCATTTACAATGTTCATAACTACTGCAGCGCAGGGAGTACGGGCCTGTATATG GCCAATCAGTTTATTCAGGCCGGCAGTGCTGATTGTGTCCTTGTGGTGGGATTTGACAAAATGTATCCTGGTGCT CTTCCACAGATTTATAAGGATAGGGAGAATCCCCTGGGAAGAATTCTGGCTCTTTCGAAGCGTTTTATTCCCGAA GGTCAAGCAGAATCAGCTGGCTGGACACCTCAGCTATATGCCAACGCCCAAGCTGAGTACCTGGAAAAATACGGG TCGAACGGAGCAAAAGCAGAGCATTTCGCCGCTATTGCCTCCACTAACCGTACGCATGGCATGAACAATCCATAC AGTCAGCTGCGTCAGTCTGTGACGACCAAGGAAGTTTCATCGAGTCCACAGGTGTCGGGATCGATTACTCGGCTA CAATGCTGTCCATCCTCGACCGGAGCTGCCGCCACGGTCCTAGTGTCGGAGCGTTTCCTGCAAGCTCATCCCTAC CTGAAGGGAAGCGCAATTGCCATTAGGGGCCAAGCCCTTGCAACTGACTCTCGGGATTTGTATGAGCCCGCGAGC GCCATCGAGCTGATTGGGTCCAATATGACAAGACGTGCTGCCCAGAATGCCTTCAAGCAGGCTTCACTATCACCC AAAGATATCCAAGTGATTGAGCTGCATGATTGCTTTACGACAAACGAGATGTGTGCGATCGAAGACTTGGGCCTA GCTCCACACGGCGAAGGGTGGAAGCTGGTCGCCGGTGGAGGCATCACGTATGATCAAAGTTCTAAAACGAAAAGA ACGTCTCCAGGATGGATCATCAATCCCAGTGGCGGATTGATTTCCAAGGGTCATCCGCTGGGAGCGACAGGCCTT GCTCAAACGGCCGAGTTAGTATGGCATCTACGTGGCTGGGCATCAAACCGTTGTGTACCGCAGACCAAATACTGC CTGCAGCACAACATGGGCCTCGGGGGTGCTACAGTTGTCACTGTTTTAGGTCGTGCCGATGACAAAGTTGCACCC TTGTCGTCTGAAATCCAGGATCAGGTTGACGGACGACGACGTCTCGGATATAACCCAGCTCTGGAGGCAAGGGGA GTAAACAAGCAGGATATCGAGGCCGTGAAATCTCGAAAGGCATTTAGTAATTGGGCTGCCGACACATTCGAAGCT CTGGGAAATCCACGTGAAGTTAGATTGTGA |
| Gene | >Pro_DTO377G3_2|g4810.t1 ATGACTGCCTCCCCAGTATACATCGTCGGTGTGGGGATGACCCCATTTCAGTCTCCCAAAAAATCAGCTGCAACC TCCTCCAATCCCGAGGGAGATTATTTCAACCTCGCCGTATCCGCATGTGTGAAAGCTTTACTCGATGCCGGAATC AACTATGATGATGTTGATCAGGGAGTTGGGTGTTATGTGTTTGGTGACTCTGCTGGCGCACAGCGTGTTTTCTAC ACCCTGGGGATGACTGGAGTTCCCATTTACAATGTTCATAACTACTGCAGCGCAGGGAGTACGGGCCTGTATATG GCCAATCAGTTTATTCAGGCCGGCAGTGCTGATTGTGTCCTTGTGGTGGGATTTGACAAAATGTATCCTGGTGCT CTTCCACAGATTTATAAGGATAGGGAGAATCCCCTGGGAAGAATTCTGGCTCTTTCGAAGCGTTTTATTCCCGAA GGTCAAGCAGAATCAGCTGGCTGGACACCTCAGCTATATGCCAACGCCCAAGCTGAGTACCTGGAAAAATACGGG TCGAACGGAGCAAAAGCAGAGCATTTCGCCGCTATTGCCTCCACTAACCGTACGCATGGCATGAACAATCCATAC AGTCAGCTGCGTCAGTCTGTGACGACCAAGGAAGTTTCATCGAGTCCACAGGTGTCGGGATCGATTACTCGGCTA CAATGCTGTCCATCCTCGGTAAGTACATATTCTTATCAAACCCCGCCTGCATACACCAGTGTGTACTAATATGAT AGACCGGAGCTGCCGCCACGGTCCTAGTGTCGGAGCGTTTCCTGCAAGCTCATCCCTACCTGAAGGGAAGCGCAA TTGCCATTAGGGGCCAAGCCCTTGCAACTGACTCTCGGGATTTGTATGAGCCCGCGAGCGCCATCGAGCTGATTG GGTCCAATATGACAAGACGTGCTGCCCAGAATGCCTTCAAGCAGGCTTCACTATCACCCAAAGATATCCAAGTGA TTGAGCTGCATGATTGCTTTACGACAAACGAGATGTGTGCGATCGAAGACTTGGGCCTAGCTCCACACGGCGAAG GGTGGAAGCTGGTCGCCGGTGGAGGCATCACGTATGATCAAAGTTCTAAAACGAAAAGAACGTCTCCAGGATGGA TCATCAATCCCAGTGGCGGATTGATTTCCAAGGGTCATCCGCTGGGAGCGACAGGCCTTGCTCAAACGGCCGAGT TAGGTACCTTCAATTCAACCCATTTATATAGGGGATTATGCTAATGTAGATTTAGTATGGCATCTACGTGGCTGG GCATCAAACCGTTGTGTACCGCAGACCAAATACTGCCTGCAGCACAACATGGGCCTCGGGGGTGCTACAGTTGTC ACTGTTTTAGGTCGTGCCGATGACAAAGTTGCACCCTTGTCGTCTGAAATCCAGGATCAGGTTGACGGACGACGA CGTCTCGGATATAACCCAGCTCTGGAGGCAAGGGGAGTAAACAAGCAGGATATCGAGGCCGTGAAATCTCGAAAG GCATTTAGTAATTGGGCTGCCGACACATTCGAAGCTCTGGGAAATCCACGTGAAGTTAGATTGTGA |