© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4788.t1 |
| Gene name | err1 |
| Location | scaffold_10:402475..403581 |
| Strand | - |
| Gene length (bp) | 1106 |
| Transcript length (bp) | 927 |
| Coding sequence length (bp) | 927 |
| Protein length (aa) | 309 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00248 | Aldo_ket_red | Aldo/keto reductase family | 9.4E-47 | 16 | 284 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 27 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 10.31 | 3.61 | 17.01 |
| 5d_25C | Five days - 25 degrees Celsius | 27.19 | 12.81 | 41.56 |
| 7d_25C | Seven days - 25 degrees Celsius | 32.45 | 15.93 | 48.97 |
| 10d_25C | Ten days - 25 degrees Celsius | 56.77 | 31.84 | 81.70 |
| 7d_15C | Seven days - 15 degrees Celsius | 25.26 | 11.27 | 39.25 |
| 7d_30C | Seven days - 30 degrees Celsius | 30.96 | 14.92 | 47.00 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.001278 | yes |
| 3d_25C | 7d_25C | 0.000700 | yes |
| 3d_25C | 7d_15C | 0.003625 | yes |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.608026 | no |
| 5d_25C | 7d_15C | 0.864574 | no |
| 5d_25C | 7d_30C | 0.734038 | no |
| 5d_25C | 10d_25C | 0.002761 | yes |
| 7d_25C | 7d_15C | 0.456826 | no |
| 7d_25C | 7d_30C | 0.914919 | no |
| 7d_25C | 10d_25C | 0.027278 | yes |
| 7d_15C | 7d_30C | 0.580153 | no |
| 7d_15C | 10d_25C | 0.001804 | yes |
| 7d_30C | 10d_25C | 0.022940 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4788.t1 MPTKFKLNTGAEVPALGFGTWQDADAQEDAVAEAIKAGYRHIDTARVYATEKAVGKGVKKSGVPREELFITTKLW NNKHHPDDVASAMQQSLDDLDMDYVDLFLIHWPVAWERGEELFPVKDGKPIMVNIDIADTYKAMEQLLKTGKARA IGVSNFNKSEMEHLIKNSSVVPAVHQMECHPWLQQHDFTEWNRSQGILVMHYSPFGNQNSLYAGKRPAHLLDEPV LAEIGKPYNKTPSQVALAWAVTQGHAVLSKSKTPVRIRANLGGDFKLSPEDMKKIEKLNRKFRFNDSSNEFGREC FVGLEGKN* |
| Coding | >Pro_DTO377G3_2|g4788.t1 ATGCCCACAAAATTCAAGTTGAACACCGGAGCCGAGGTCCCAGCCCTTGGATTCGGCACCTGGCAGGATGCGGAT GCACAGGAAGATGCCGTAGCGGAAGCAATCAAGGCAGGATACCGTCACATCGACACTGCACGCGTTTATGCAACT GAGAAGGCTGTCGGCAAAGGCGTCAAGAAAAGCGGTGTCCCACGCGAAGAGCTCTTCATTACAACTAAGCTATGG AACAACAAGCACCACCCAGACGACGTGGCATCGGCTATGCAGCAATCCCTGGACGATCTAGACATGGACTACGTT GATCTGTTCCTGATTCACTGGCCTGTGGCCTGGGAACGAGGGGAGGAACTCTTTCCGGTAAAGGATGGGAAGCCG ATCATGGTGAATATCGACATTGCCGACACGTACAAAGCGATGGAACAGCTTCTGAAAACCGGCAAGGCGAGGGCG ATCGGCGTCTCGAACTTTAACAAGTCCGAGATGGAGCACTTGATCAAGAACTCTTCCGTCGTTCCCGCTGTGCAC CAGATGGAATGTCATCCGTGGCTCCAGCAGCATGATTTCACCGAATGGAATCGAAGTCAGGGTATACTTGTCATG CACTACTCGCCGTTTGGAAACCAGAACTCTCTCTATGCTGGGAAGCGCCCCGCCCATCTGCTCGATGAGCCTGTG TTGGCGGAGATAGGCAAGCCGTACAACAAAACCCCCTCTCAGGTTGCTCTTGCCTGGGCAGTCACGCAGGGGCAC GCGGTGCTGTCGAAGTCTAAAACACCTGTGAGGATCAGGGCCAATCTGGGAGGGGATTTCAAGCTGAGCCCAGAA GACATGAAGAAGATTGAGAAACTCAACAGGAAATTCCGTTTCAATGATAGCAGCAACGAGTTTGGCAGAGAGTGC TTTGTTGGTCTGGAGGGAAAGAACTGA |
| Transcript | >Pro_DTO377G3_2|g4788.t1 ATGCCCACAAAATTCAAGTTGAACACCGGAGCCGAGGTCCCAGCCCTTGGATTCGGCACCTGGCAGGATGCGGAT GCACAGGAAGATGCCGTAGCGGAAGCAATCAAGGCAGGATACCGTCACATCGACACTGCACGCGTTTATGCAACT GAGAAGGCTGTCGGCAAAGGCGTCAAGAAAAGCGGTGTCCCACGCGAAGAGCTCTTCATTACAACTAAGCTATGG AACAACAAGCACCACCCAGACGACGTGGCATCGGCTATGCAGCAATCCCTGGACGATCTAGACATGGACTACGTT GATCTGTTCCTGATTCACTGGCCTGTGGCCTGGGAACGAGGGGAGGAACTCTTTCCGGTAAAGGATGGGAAGCCG ATCATGGTGAATATCGACATTGCCGACACGTACAAAGCGATGGAACAGCTTCTGAAAACCGGCAAGGCGAGGGCG ATCGGCGTCTCGAACTTTAACAAGTCCGAGATGGAGCACTTGATCAAGAACTCTTCCGTCGTTCCCGCTGTGCAC CAGATGGAATGTCATCCGTGGCTCCAGCAGCATGATTTCACCGAATGGAATCGAAGTCAGGGTATACTTGTCATG CACTACTCGCCGTTTGGAAACCAGAACTCTCTCTATGCTGGGAAGCGCCCCGCCCATCTGCTCGATGAGCCTGTG TTGGCGGAGATAGGCAAGCCGTACAACAAAACCCCCTCTCAGGTTGCTCTTGCCTGGGCAGTCACGCAGGGGCAC GCGGTGCTGTCGAAGTCTAAAACACCTGTGAGGATCAGGGCCAATCTGGGAGGGGATTTCAAGCTGAGCCCAGAA GACATGAAGAAGATTGAGAAACTCAACAGGAAATTCCGTTTCAATGATAGCAGCAACGAGTTTGGCAGAGAGTGC TTTGTTGGTCTGGAGGGAAAGAACTGA |
| Gene | >Pro_DTO377G3_2|g4788.t1 ATGCCCACAAAATTCAAGTTGAACACCGGAGCCGAGGTCCCAGCCCTTGGATTCGGCACCTGGCAGGATGCGGAT GCACAGGAAGATGCCGTAGCGGAAGCAATCAAGGCAGGATACCGTCACATCGACACTGCACGCGTGTGAGCAGCT TTGCTTCCCGAATGAGACGAGTGGCGAACTCAATGTACAGAACTGACTGTATACTAGTTATGCAACTGAGAAGGC TGTCGGCAAAGGCGTCAAGAAAAGCGGTGTCCCACGCGAAGAGCTCTTCATTACAACTAAGCTATGGAACAACAA GCACCACCCAGACGACGTGGCATCGGCTATGCAGCAATCCCTGGACGATCTAGACATGGACTACGTTGATCTGTT CCTGATTCACTGGCCTGTGGCCTGGGAACGAGGGGAGGAACTCTTTCCGGTAAAGGATGGGAAGCCGATCATGGT GAATATCGACATTGCCGACGTATGCAGCATTCTCATATCTTGATCTATGAATTTAGCCGTTGACACAAAAGCAGA CGTACAAAGCGATGGAACAGCTTCTGAAAACCGGCAAGGCGAGGGCGATCGGCGTCTCGAACTTTAACAAGTCCG AGATGGAGCACTTGATCAAGAACTCTTCCGTCGTTCCCGCTGTGCACCAGATGGAATGTCATCCGTGGCTCCAGC AGCATGATTTCACCGAATGGAATCGAAGTCAGGGTATACTTGTCATGCACTACTCGCCGTTTGGAAACCAGAACT CTCTCTATGCTGGGAAGCGCCCCGCCCATCTGCTCGATGAGCCTGTGTTGGCGGAGATAGGCAAGCCGTACAACA AAACCCCCTCTCAGGTTGCTCTTGGTAAGTGGAATCTGCATGGATTTAGTCTGTATGATACTAACTGCAGTTGTT CGACAGCCTGGGCAGTCACGCAGGGGCACGCGGTGCTGTCGAAGTCTAAAACACCTGTGAGGATCAGGGCCAATC TGGGAGGGGATTTCAAGCTGAGCCCAGAAGACATGAAGAAGATTGAGAAACTCAACAGGAAATTCCGTTTCAATG ATAGCAGCAACGAGTTTGGCAGAGAGTGCTTTGTTGGTCTGGAGGGAAAGAACTGA |