© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4786.t1 |
| Gene name | |
| Location | scaffold_10:397603..398927 |
| Strand | + |
| Gene length (bp) | 1324 |
| Transcript length (bp) | 1269 |
| Coding sequence length (bp) | 1269 |
| Protein length (aa) | 423 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00724 | Oxidored_FMN | NADH:flavin oxidoreductase / NADH oxidase family | 3.5E-63 | 40 | 387 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0010181 | FMN binding | Yes |
| GO:0003824 | catalytic activity | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0043168 | anion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0036094 | small molecule binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 29 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 12.04 | 5.03 | 19.06 |
| 5d_25C | Five days - 25 degrees Celsius | 9.40 | 3.61 | 15.19 |
| 7d_25C | Seven days - 25 degrees Celsius | 14.30 | 6.25 | 22.36 |
| 10d_25C | Ten days - 25 degrees Celsius | 14.44 | 6.41 | 22.48 |
| 7d_15C | Seven days - 15 degrees Celsius | 26.35 | 13.57 | 39.13 |
| 7d_30C | Seven days - 30 degrees Celsius | 7.58 | 2.67 | 12.49 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.534935 | no |
| 3d_25C | 7d_25C | 0.671950 | no |
| 3d_25C | 7d_15C | 0.006000 | yes |
| 3d_25C | 7d_30C | 0.195514 | no |
| 3d_25C | 10d_25C | 0.651967 | no |
| 5d_25C | 7d_25C | 0.212027 | no |
| 5d_25C | 7d_15C | 0.000700 | yes |
| 5d_25C | 7d_30C | 0.623251 | no |
| 5d_25C | 10d_25C | 0.201736 | no |
| 7d_25C | 7d_15C | 0.030434 | yes |
| 7d_25C | 7d_30C | 0.056346 | no |
| 7d_25C | 10d_25C | 0.985015 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.036077 | yes |
| 7d_30C | 10d_25C | 0.049382 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4786.t1 MTWPDVSVKPAEGISYFTPAQSPPAGTARNPQTSGKPIPKLFEPITIRGVTFHNRLGLAPMCQYSAEDGHMTPWH MAHYGGIAQRGPGNLVIEATSVVPEGRITPGCLGLWKDSQIAPFKQVVEFAHSQGQKIGVQLAHAGRKASTVAPW LGGVIANNSVGGWTDNLKAPSAIPFNEGDPIPIAMTQDDIAEVKTAWVAAVKRALAAGCDFIEIHNAHGYLLSSF LSASSNHRTDNYGGSFENRIRLSLEIAQLTRDTVGEDVPVFLRISATDWLENSMPDEKGWKLEDTVEFARALAAQ GAVDLIDISTGGIHSAQKVASGPAFQVPHAIAVKKAVGDKMLVSAVGMINNGKLAEKILNEDDIDVIFVGRAFQR DTGLTWQFAKDLDVEIAMAGQIRWGFTSFRNASEYIQPNSMKACIFD* |
| Coding | >Pro_DTO377G3_2|g4786.t1 ATGACCTGGCCTGATGTCTCCGTTAAGCCCGCCGAGGGCATCTCATACTTCACCCCTGCCCAGAGTCCCCCGGCA GGCACAGCTCGCAACCCTCAAACGAGCGGAAAGCCCATTCCCAAGCTGTTCGAGCCTATCACCATCAGAGGAGTG ACTTTCCACAATCGCCTTGGTTTGGCGCCCATGTGCCAATACAGTGCCGAGGATGGCCACATGACCCCCTGGCAC ATGGCCCACTACGGCGGCATTGCCCAGCGCGGACCAGGAAACCTGGTCATCGAAGCCACCAGTGTTGTCCCCGAA GGCCGCATCACCCCCGGCTGCCTAGGCCTCTGGAAGGACTCGCAGATCGCGCCGTTCAAGCAGGTCGTTGAGTTT GCACACAGCCAAGGCCAGAAAATCGGTGTCCAGCTCGCACACGCCGGCCGTAAGGCCTCGACTGTGGCCCCTTGG CTTGGCGGCGTTATCGCGAACAACTCTGTCGGCGGTTGGACCGATAACCTCAAGGCTCCCAGCGCCATCCCCTTC AATGAGGGCGATCCCATCCCCATTGCCATGACCCAGGACGATATCGCCGAGGTCAAGACTGCCTGGGTTGCTGCT GTCAAGCGTGCTCTTGCTGCTGGTTGTGATTTCATCGAGATCCACAACGCTCATGGTTACCTCCTCTCCTCGTTC CTCAGCGCCTCCTCCAACCACCGCACCGATAACTACGGTGGCAGCTTCGAGAACCGCATTCGTCTCTCCTTGGAG ATCGCACAGTTGACCCGTGACACTGTCGGTGAGGACGTGCCCGTCTTCCTGCGTATCTCGGCTACCGACTGGCTT GAGAACAGCATGCCGGATGAGAAGGGCTGGAAGCTTGAGGACACGGTTGAGTTTGCTCGTGCACTTGCTGCGCAG GGCGCTGTCGATCTGATCGATATCAGTACTGGTGGTATTCACTCTGCTCAGAAGGTTGCCTCTGGTCCTGCTTTC CAGGTCCCTCACGCTATAGCTGTCAAGAAGGCTGTTGGGGATAAGATGCTTGTTTCTGCTGTTGGTATGATCAAC AACGGAAAATTGGCAGAGAAGATTTTGAACGAGGATGACATTGACGTCATTTTTGTTGGTCGTGCCTTCCAGCGG GATACCGGTCTCACTTGGCAGTTTGCTAAGGACTTGGATGTTGAGATTGCCATGGCTGGACAGATTCGCTGGGGT TTCACTAGCTTCCGCAATGCGTCCGAGTATATTCAGCCTAACTCTATGAAGGCTTGTATTTTTGATTAG |
| Transcript | >Pro_DTO377G3_2|g4786.t1 ATGACCTGGCCTGATGTCTCCGTTAAGCCCGCCGAGGGCATCTCATACTTCACCCCTGCCCAGAGTCCCCCGGCA GGCACAGCTCGCAACCCTCAAACGAGCGGAAAGCCCATTCCCAAGCTGTTCGAGCCTATCACCATCAGAGGAGTG ACTTTCCACAATCGCCTTGGTTTGGCGCCCATGTGCCAATACAGTGCCGAGGATGGCCACATGACCCCCTGGCAC ATGGCCCACTACGGCGGCATTGCCCAGCGCGGACCAGGAAACCTGGTCATCGAAGCCACCAGTGTTGTCCCCGAA GGCCGCATCACCCCCGGCTGCCTAGGCCTCTGGAAGGACTCGCAGATCGCGCCGTTCAAGCAGGTCGTTGAGTTT GCACACAGCCAAGGCCAGAAAATCGGTGTCCAGCTCGCACACGCCGGCCGTAAGGCCTCGACTGTGGCCCCTTGG CTTGGCGGCGTTATCGCGAACAACTCTGTCGGCGGTTGGACCGATAACCTCAAGGCTCCCAGCGCCATCCCCTTC AATGAGGGCGATCCCATCCCCATTGCCATGACCCAGGACGATATCGCCGAGGTCAAGACTGCCTGGGTTGCTGCT GTCAAGCGTGCTCTTGCTGCTGGTTGTGATTTCATCGAGATCCACAACGCTCATGGTTACCTCCTCTCCTCGTTC CTCAGCGCCTCCTCCAACCACCGCACCGATAACTACGGTGGCAGCTTCGAGAACCGCATTCGTCTCTCCTTGGAG ATCGCACAGTTGACCCGTGACACTGTCGGTGAGGACGTGCCCGTCTTCCTGCGTATCTCGGCTACCGACTGGCTT GAGAACAGCATGCCGGATGAGAAGGGCTGGAAGCTTGAGGACACGGTTGAGTTTGCTCGTGCACTTGCTGCGCAG GGCGCTGTCGATCTGATCGATATCAGTACTGGTGGTATTCACTCTGCTCAGAAGGTTGCCTCTGGTCCTGCTTTC CAGGTCCCTCACGCTATAGCTGTCAAGAAGGCTGTTGGGGATAAGATGCTTGTTTCTGCTGTTGGTATGATCAAC AACGGAAAATTGGCAGAGAAGATTTTGAACGAGGATGACATTGACGTCATTTTTGTTGGTCGTGCCTTCCAGCGG GATACCGGTCTCACTTGGCAGTTTGCTAAGGACTTGGATGTTGAGATTGCCATGGCTGGACAGATTCGCTGGGGT TTCACTAGCTTCCGCAATGCGTCCGAGTATATTCAGCCTAACTCTATGAAGGCTTGTATTTTTGATTAG |
| Gene | >Pro_DTO377G3_2|g4786.t1 ATGACCTGGCCTGATGTCTCCGTTAAGCCCGCCGAGGGCATCTCATACTTCACCCCTGCCCAGAGTCCCCCGGCA GGCACAGCTCGCAACCCTCAAACGAGCGGAAAGCCCATTCCCAAGCTGTTCGAGCCTATCACCATCAGAGGAGTG ACTTTCCACAATCGCCTTGGTGTATGCAATTCCCCCAATTCCTTCCATAATCGCACAGCTAACAATAACCCTCCA GTTGGCGCCCATGTGCCAATACAGTGCCGAGGATGGCCACATGACCCCCTGGCACATGGCCCACTACGGCGGCAT TGCCCAGCGCGGACCAGGAAACCTGGTCATCGAAGCCACCAGTGTTGTCCCCGAAGGCCGCATCACCCCCGGCTG CCTAGGCCTCTGGAAGGACTCGCAGATCGCGCCGTTCAAGCAGGTCGTTGAGTTTGCACACAGCCAAGGCCAGAA AATCGGTGTCCAGCTCGCACACGCCGGCCGTAAGGCCTCGACTGTGGCCCCTTGGCTTGGCGGCGTTATCGCGAA CAACTCTGTCGGCGGTTGGACCGATAACCTCAAGGCTCCCAGCGCCATCCCCTTCAATGAGGGCGATCCCATCCC CATTGCCATGACCCAGGACGATATCGCCGAGGTCAAGACTGCCTGGGTTGCTGCTGTCAAGCGTGCTCTTGCTGC TGGTTGTGATTTCATCGAGATCCACAACGCTCATGGTTACCTCCTCTCCTCGTTCCTCAGCGCCTCCTCCAACCA CCGCACCGATAACTACGGTGGCAGCTTCGAGAACCGCATTCGTCTCTCCTTGGAGATCGCACAGTTGACCCGTGA CACTGTCGGTGAGGACGTGCCCGTCTTCCTGCGTATCTCGGCTACCGACTGGCTTGAGAACAGCATGCCGGATGA GAAGGGCTGGAAGCTTGAGGACACGGTTGAGTTTGCTCGTGCACTTGCTGCGCAGGGCGCTGTCGATCTGATCGA TATCAGTACTGGTGGTATTCACTCTGCTCAGAAGGTTGCCTCTGGTCCTGCTTTCCAGGTCCCTCACGCTATAGC TGTCAAGAAGGCTGTTGGGGATAAGATGCTTGTTTCTGCTGTTGGTATGATCAACAACGGAAAATTGGCAGAGAA GATTTTGAACGAGGATGACATTGACGTCATTTTTGTTGGTCGTGCCTTCCAGCGGGATACCGGTCTCACTTGGCA GTTTGCTAAGGACTTGGATGTTGAGATTGCCATGGCTGGACAGATTCGCTGGGGTTTCACTAGCTTCCGCAATGC GTCCGAGTATATTCAGCCTAACTCTATGAAGGCTTGTATTTTTGATTAG |