© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g4784.t1 |
| Gene name | |
| Location | scaffold_10:390764..392721 |
| Strand | - |
| Gene length (bp) | 1957 |
| Transcript length (bp) | 1836 |
| Coding sequence length (bp) | 1836 |
| Protein length (aa) | 612 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13641 | Glyco_tranf_2_3 | Glycosyltransferase like family 2 | 1.9E-16 | 104 | 334 |
| PF13632 | Glyco_trans_2_3 | Glycosyl transferase family group 2 | 4.7E-16 | 200 | 384 |
| PF00535 | Glycos_transf_2 | Glycosyl transferase family 2 | 1.1E-12 | 107 | 279 |
| PF13506 | Glyco_transf_21 | Glycosyl transferase family 21 | 9.8E-05 | 198 | 333 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016757 | glycosyltransferase activity | Yes |
| GO:0016740 | transferase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 67 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 31 | 53 | 22 |
| 2 | 365 | 387 | 22 |
| 3 | 492 | 514 | 22 |
| 4 | 524 | 546 | 22 |
| 5 | 588 | 610 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 5.06 | 1.81 | 8.31 |
| 5d_25C | Five days - 25 degrees Celsius | 1.11 | 0.07 | 2.16 |
| 7d_25C | Seven days - 25 degrees Celsius | 1.79 | 0.36 | 3.23 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.46 | 0.00 | 0.96 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.87 | 0.00 | 1.80 |
| 7d_30C | Seven days - 30 degrees Celsius | 2.87 | 0.56 | 5.18 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.002297 | yes |
| 3d_25C | 7d_25C | 0.005626 | yes |
| 3d_25C | 7d_15C | 0.002297 | yes |
| 3d_25C | 7d_30C | 0.192251 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.375080 | no |
| 5d_25C | 7d_15C | 0.741981 | no |
| 5d_25C | 7d_30C | 0.051659 | no |
| 5d_25C | 10d_25C | 0.136448 | no |
| 7d_25C | 7d_15C | 0.200400 | no |
| 7d_25C | 7d_30C | 0.349953 | no |
| 7d_25C | 10d_25C | 0.019886 | yes |
| 7d_15C | 7d_30C | 0.034353 | yes |
| 7d_15C | 10d_25C | 0.363296 | no |
| 7d_30C | 10d_25C | 0.001278 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4784.t1 MFPNNVYEIEELSPDDRALYAQKYRKYLRRIAQAAIWTTYIYFTVRLFFTVMSPEQTWQRWLMLGVEGLFAHISL NHQRLSLAATTKPPHQTLRKRLRSNENLPRVDVLVTCCGEPVEIILDTVRAACGLDYPASRFRVRLLDDGASTDL HDAIAKLATKWTHLSYHTRGKQSGQSFAKAGNLNYALFSLQTEDPPEFCTVVDADSILMPEFLRATLPHLLEDPK AALLTTRQYFYNLPCGDPLSQSRAYFYTCENTELDLLGHALDAGSGAVFRRDAILDAGGYPTYSFSEDWQLSLIL RGLGKRTMQVQEVLQFGLVPTSLAGHLKQRNRWHIGHSQQISVLLPSVNKAIPEHLRWDIALGGLSIMAGLVTYS IGFVALPFLLVSDGGFIPAGSALEVKIQLVLAIVHVASTWAYDWARSAHAGVPFAPFAHAENSWLSTAHLYAIAR FHLFGSKPKGSFVTGSTANSSENATSISSFQKAYRDTLQSGALLNICLFIATVGAMLFAIWVAVTGDGTEIPKLL TTFAWPPLLHLCFLTIVHNWVPIAHLFNSPAYHPRDSRLLTTEKEISYPRAEIEEELSSETPLLGLCCSFIVPVV LLGALAGVLIS* |
| Coding | >Pro_DTO377G3_2|g4784.t1 ATGTTTCCTAACAACGTCTATGAAATCGAGGAGCTTTCCCCTGATGATCGCGCTCTGTATGCGCAGAAGTATCGG AAATATCTCCGCCGTATAGCGCAAGCAGCAATATGGACCACCTACATCTACTTTACAGTGCGGCTATTTTTCACC GTGATGAGCCCAGAGCAAACATGGCAAAGATGGTTAATGCTCGGAGTTGAGGGTCTATTTGCTCATATTTCCCTA AACCACCAACGCTTATCGCTAGCCGCAACGACAAAGCCACCACATCAGACACTCCGCAAGAGACTACGCAGCAAC GAAAACCTGCCCAGAGTCGATGTGCTAGTAACATGCTGCGGAGAGCCAGTCGAAATCATCCTGGACACGGTCCGA GCAGCATGTGGTTTAGACTACCCAGCTTCCCGGTTTCGAGTCCGCCTTCTGGATGATGGAGCGTCAACTGACTTG CACGACGCAATTGCAAAACTCGCCACAAAATGGACTCACCTATCCTATCACACCCGCGGCAAGCAATCCGGGCAA TCCTTCGCCAAAGCAGGAAATCTTAACTACGCCCTATTCTCCCTGCAAACCGAAGACCCGCCAGAGTTCTGCACA GTCGTCGATGCAGACTCCATCCTGATGCCGGAGTTTCTGCGCGCGACACTGCCCCATCTACTTGAAGACCCAAAG GCAGCATTACTGACCACGCGACAGTATTTCTATAATCTGCCCTGTGGCGATCCCCTCTCCCAGTCGCGGGCTTAC TTCTACACGTGTGAGAATACAGAACTCGATCTTCTCGGTCATGCGCTAGACGCAGGTTCAGGTGCAGTCTTCCGT CGCGACGCGATTCTCGACGCAGGTGGATATCCGACCTATTCTTTCTCGGAAGATTGGCAGCTATCGTTGATTTTA CGAGGGCTGGGAAAGCGCACGATGCAGGTACAAGAGGTTTTGCAATTCGGCCTCGTTCCTACTTCTCTCGCGGGA CATCTCAAACAGCGGAATCGGTGGCACATCGGACACTCTCAGCAGATTTCTGTGTTGCTCCCTTCTGTCAACAAG GCGATTCCAGAGCATCTGCGTTGGGATATTGCTCTTGGGGGACTGTCTATCATGGCAGGTCTTGTGACCTACTCG ATCGGATTTGTTGCTCTGCCTTTCCTTCTGGTCTCCGATGGTGGGTTTATTCCTGCTGGGTCGGCGTTGGAGGTG AAGATTCAGCTTGTTTTAGCCATCGTGCATGTTGCGTCCACATGGGCATATGACTGGGCTCGGAGTGCACACGCG GGTGTTCCATTTGCGCCTTTTGCACACGCAGAGAACAGTTGGCTTTCTACTGCCCATCTGTACGCCATTGCTCGA TTCCACCTATTCGGAAGCAAGCCAAAGGGATCTTTTGTCACCGGAAGCACCGCCAATTCGAGCGAAAATGCTACA TCCATTTCGTCGTTCCAAAAGGCATACAGAGATACTCTTCAAAGCGGTGCTTTGTTGAACATTTGTCTTTTTATT GCGACTGTTGGAGCTATGCTCTTTGCGATCTGGGTGGCTGTGACCGGAGATGGAACAGAAATTCCTAAACTGCTC ACTACATTTGCATGGCCACCATTGCTGCACTTGTGCTTCTTGACAATTGTCCACAATTGGGTACCCATTGCTCAT CTTTTCAACTCTCCGGCCTATCACCCCAGAGACTCTAGATTGCTCACCACGGAGAAGGAAATATCATACCCACGA GCGGAAATCGAGGAGGAACTTAGTTCTGAAACACCTCTCCTCGGACTCTGCTGCTCTTTTATAGTGCCAGTTGTT CTTTTAGGAGCCCTTGCTGGTGTTCTCATATCATAG |
| Transcript | >Pro_DTO377G3_2|g4784.t1 ATGTTTCCTAACAACGTCTATGAAATCGAGGAGCTTTCCCCTGATGATCGCGCTCTGTATGCGCAGAAGTATCGG AAATATCTCCGCCGTATAGCGCAAGCAGCAATATGGACCACCTACATCTACTTTACAGTGCGGCTATTTTTCACC GTGATGAGCCCAGAGCAAACATGGCAAAGATGGTTAATGCTCGGAGTTGAGGGTCTATTTGCTCATATTTCCCTA AACCACCAACGCTTATCGCTAGCCGCAACGACAAAGCCACCACATCAGACACTCCGCAAGAGACTACGCAGCAAC GAAAACCTGCCCAGAGTCGATGTGCTAGTAACATGCTGCGGAGAGCCAGTCGAAATCATCCTGGACACGGTCCGA GCAGCATGTGGTTTAGACTACCCAGCTTCCCGGTTTCGAGTCCGCCTTCTGGATGATGGAGCGTCAACTGACTTG CACGACGCAATTGCAAAACTCGCCACAAAATGGACTCACCTATCCTATCACACCCGCGGCAAGCAATCCGGGCAA TCCTTCGCCAAAGCAGGAAATCTTAACTACGCCCTATTCTCCCTGCAAACCGAAGACCCGCCAGAGTTCTGCACA GTCGTCGATGCAGACTCCATCCTGATGCCGGAGTTTCTGCGCGCGACACTGCCCCATCTACTTGAAGACCCAAAG GCAGCATTACTGACCACGCGACAGTATTTCTATAATCTGCCCTGTGGCGATCCCCTCTCCCAGTCGCGGGCTTAC TTCTACACGTGTGAGAATACAGAACTCGATCTTCTCGGTCATGCGCTAGACGCAGGTTCAGGTGCAGTCTTCCGT CGCGACGCGATTCTCGACGCAGGTGGATATCCGACCTATTCTTTCTCGGAAGATTGGCAGCTATCGTTGATTTTA CGAGGGCTGGGAAAGCGCACGATGCAGGTACAAGAGGTTTTGCAATTCGGCCTCGTTCCTACTTCTCTCGCGGGA CATCTCAAACAGCGGAATCGGTGGCACATCGGACACTCTCAGCAGATTTCTGTGTTGCTCCCTTCTGTCAACAAG GCGATTCCAGAGCATCTGCGTTGGGATATTGCTCTTGGGGGACTGTCTATCATGGCAGGTCTTGTGACCTACTCG ATCGGATTTGTTGCTCTGCCTTTCCTTCTGGTCTCCGATGGTGGGTTTATTCCTGCTGGGTCGGCGTTGGAGGTG AAGATTCAGCTTGTTTTAGCCATCGTGCATGTTGCGTCCACATGGGCATATGACTGGGCTCGGAGTGCACACGCG GGTGTTCCATTTGCGCCTTTTGCACACGCAGAGAACAGTTGGCTTTCTACTGCCCATCTGTACGCCATTGCTCGA TTCCACCTATTCGGAAGCAAGCCAAAGGGATCTTTTGTCACCGGAAGCACCGCCAATTCGAGCGAAAATGCTACA TCCATTTCGTCGTTCCAAAAGGCATACAGAGATACTCTTCAAAGCGGTGCTTTGTTGAACATTTGTCTTTTTATT GCGACTGTTGGAGCTATGCTCTTTGCGATCTGGGTGGCTGTGACCGGAGATGGAACAGAAATTCCTAAACTGCTC ACTACATTTGCATGGCCACCATTGCTGCACTTGTGCTTCTTGACAATTGTCCACAATTGGGTACCCATTGCTCAT CTTTTCAACTCTCCGGCCTATCACCCCAGAGACTCTAGATTGCTCACCACGGAGAAGGAAATATCATACCCACGA GCGGAAATCGAGGAGGAACTTAGTTCTGAAACACCTCTCCTCGGACTCTGCTGCTCTTTTATAGTGCCAGTTGTT CTTTTAGGAGCCCTTGCTGGTGTTCTCATATCATAG |
| Gene | >Pro_DTO377G3_2|g4784.t1 ATGTTTCCTAACAACGTCTATGAAATCGAGGAGCTTTCCCCTGATGATCGCGCTCTGTATGCGCAGAAGTATCGG AAATATCTCCGCCGTATAGCGCAAGCAGCAATATGGACCACCTACATCTACTTTACAGTGCGGCTATTTTTCACC GTGATGAGCCCAGAGCAAACATGGCAAAGATGGTTAATGCTCGGAGTTGAGGGTCTATTTGCTCGTACGTTACCT TCCAAGAAAGAACGATGAGCATCCGCTGATCTTCTTAGATATTTCCCTAAACCACCAACGCTTATCGCTAGCCGC AACGACAAAGCCACCACATCAGACACTCCGCAAGAGACTACGCAGCAACGAAAACCTGCCCAGAGTCGATGTGCT AGTAACATGCTGCGGAGAGCCAGTCGAAATCATCCTGGACACGGTCCGAGCAGCATGTGGTTTAGACTACCCAGC TTCCCGGTTTCGAGTCCGCCTTCTGGATGATGGAGCGTCAACTGACTTGCACGACGCAATTGCAAAACTCGCCAC AAAATGGACTCACCTATCCTATCACACCCGCGGCAAGCAATCCGGGCAATCCTTCGCCAAAGCAGGAAATCTTAA CTACGCCCTATTCTCCCTGCAAACCGAAGACCCGCCAGAGTTCTGCACAGTCGTCGATGCAGACTCCATCCTGAT GCCGGAGTTTCTGCGCGCGACACTGCCCCATCTACTTGAAGACCCAAAGGCAGCATTACTGACCACGCGACAGTA TTTCTATAATCTGCCCTGTGGCGATCCCCTCTCCCAGTCGCGGGCTTACTTCTACACGTGTGAGAATACAGAACT CGATCTTCTCGGTCATGCGCTAGACGCAGGTTCAGGTGCAGTCTTCCGTCGCGACGCGATTCTCGACGCAGGTGG ATATCCGACCTATTCTTTCTCGGAAGATTGGCAGCTATCGTTGATTTTACGAGGGCTGGGAAAGCGCACGATGCA GGTACAAGAGGTTTTGCAATTCGGCCTCGTTCCTACTTCTCTCGCGGGACATCTCAAACAGCGGAATCGGTGGCA CATCGGACACTCTCAGCAGATTTCTGTGTTGCTCCCTTCTGTCAACAAGGCGATTCCAGAGCATCTGCGTTGGGA TATTGCTCTTGGGGGACTGTCTATCATGGCAGGTCTTGTGACCTACTCGATCGGATTTGTTGCTCTGCCTTTCCT TCTGGTCTCCGATGGTGGGTTTATTCCTGCTGGGTCGGCGTTGGAGGTGAAGATTCAGCTTGTTTTAGCCATCGT GCATGTTGCGTCCACATGGGCATATGACTGGGCTCGGAGTGCACACGCGGGTGTTCCATTTGCGCCTTTTGCACA CGCAGAGAACAGTTGGCTTTCTACTGGTAAGTCTGAGTTAAAACTTTCCACATATCTAATGGAACCTGAAACTTG ATCCTAACATGTTGTGTTAATAGCCCATCTGTACGCCATTGCTCGATTCCACCTATTCGGAAGCAAGCCAAAGGG ATCTTTTGTCACCGGAAGCACCGCCAATTCGAGCGAAAATGCTACATCCATTTCGTCGTTCCAAAAGGCATACAG AGATACTCTTCAAAGCGGTGCTTTGTTGAACATTTGTCTTTTTATTGCGACTGTTGGAGCTATGCTCTTTGCGAT CTGGGTGGCTGTGACCGGAGATGGAACAGAAATTCCTAAACTGCTCACTACATTTGCATGGCCACCATTGCTGCA CTTGTGCTTCTTGACAATTGTCCACAATTGGGTACCCATTGCTCATCTTTTCAACTCTCCGGCCTATCACCCCAG AGACTCTAGATTGCTCACCACGGAGAAGGAAATATCATACCCACGAGCGGAAATCGAGGAGGAACTTAGTTCTGA AACACCTCTCCTCGGACTCTGCTGCTCTTTTATAGTGCCAGTTGTTCTTTTAGGAGCCCTTGCTGGTGTTCTCAT ATCATAG |