Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g4780.t1
Gene name
Locationscaffold_10:382451..383030
Strand-
Gene length (bp)579
Transcript length (bp)519
Coding sequence length (bp)519
Protein length (aa) 173

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04145 Ctr Ctr copper transporter family 1.4E-31 17 145

GO

GO Term Description Terminal node
GO:0035434 copper ion transmembrane transport Yes
GO:0005375 copper ion transmembrane transporter activity Yes
GO:0016021 integral component of membrane Yes
GO:0003674 molecular_function No
GO:0006825 copper ion transport No
GO:0055085 transmembrane transport No
GO:0006810 transport No
GO:0008150 biological_process No
GO:0005575 cellular_component No
GO:0022857 transmembrane transporter activity No
GO:0051234 establishment of localization No
GO:0046915 transition metal ion transmembrane transporter activity No
GO:0098655 cation transmembrane transport No
GO:0034220 ion transmembrane transport No
GO:0008324 cation transmembrane transporter activity No
GO:0030001 metal ion transport No
GO:0022890 inorganic cation transmembrane transporter activity No
GO:0098660 inorganic ion transmembrane transport No
GO:0006812 cation transport No
GO:0006811 ion transport No
GO:0098662 inorganic cation transmembrane transport No
GO:0015075 ion transmembrane transporter activity No
GO:0051179 localization No
GO:0031224 intrinsic component of membrane No
GO:0015318 inorganic molecular entity transmembrane transporter activity No
GO:0005215 transporter activity No
GO:0110165 cellular anatomical entity No
GO:0009987 cellular process No
GO:0046873 metal ion transmembrane transporter activity No
GO:0000041 transition metal ion transport No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 27 0.5

Transmembrane Domains

Domain # Start End Length
1 39 58 19
2 118 140 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 45.15 20.04 70.26
5d_25C Five days - 25 degrees Celsius 67.39 33.55 101.24
7d_25C Seven days - 25 degrees Celsius 73.00 36.69 109.32
10d_25C Ten days - 25 degrees Celsius 68.33 34.06 102.60
7d_15C Seven days - 15 degrees Celsius 157.38 89.27 225.48
7d_30C Seven days - 30 degrees Celsius 117.45 63.78 171.11

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.186413 no
3d_25C 7d_25C 0.101296 no
3d_25C 7d_15C 0.000700 yes
3d_25C 7d_30C 0.000700 yes
3d_25C 10d_25C 0.169602 no
5d_25C 7d_25C 0.839304 no
5d_25C 7d_15C 0.000700 yes
5d_25C 7d_30C 0.027278 yes
5d_25C 10d_25C 0.975132 no
7d_25C 7d_15C 0.001804 yes
7d_25C 7d_30C 0.064657 no
7d_25C 10d_25C 0.873182 no
7d_15C 7d_30C 0.245676 no
7d_15C 10d_25C 0.000700 yes
7d_30C 10d_25C 0.030001 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g4780.t1
MEGMDSSTSSSSCKVSMMFNFDTIDACFLSAGWQIKNNGMFAATCIGTILLVVLVEFCRRIGREYDNFLTRQFER
QALHGTFVRRFESARTAVTFRATPLQQLTRAVIHAVTFAGAYITMLLAMYFNVYVIICIFIGAGLGKFLCDWMVV
TVGIDDVQEEIRKLEETTICCD*
Coding >Pro_DTO377G3_2|g4780.t1
ATGGAGGGCATGGATTCCAGCACCAGCTCGAGCAGCTGCAAGGTTTCGATGATGTTCAATTTCGACACCATCGAT
GCCTGTTTCCTGTCCGCAGGATGGCAGATCAAGAACAATGGCATGTTTGCCGCAACCTGTATTGGCACAATTCTG
CTGGTCGTGTTAGTCGAGTTCTGTCGGCGCATTGGTCGGGAATATGACAACTTCCTGACCCGCCAATTTGAGCGC
CAAGCCCTACACGGCACGTTTGTCAGGAGATTTGAATCTGCCAGAACCGCCGTGACATTTCGCGCGACGCCGTTA
CAACAATTGACGAGGGCTGTGATTCATGCAGTCACGTTTGCGGGGGCTTATATCACCATGTTGTTGGCCATGTAC
TTCAATGTCTATGTGATTATTTGCATCTTCATTGGTGCGGGACTGGGCAAGTTCTTATGTGATTGGATGGTTGTC
ACAGTGGGAATAGATGACGTGCAGGAAGAGATACGGAAATTGGAGGAGACAACGATATGTTGTGATTGA
Transcript >Pro_DTO377G3_2|g4780.t1
ATGGAGGGCATGGATTCCAGCACCAGCTCGAGCAGCTGCAAGGTTTCGATGATGTTCAATTTCGACACCATCGAT
GCCTGTTTCCTGTCCGCAGGATGGCAGATCAAGAACAATGGCATGTTTGCCGCAACCTGTATTGGCACAATTCTG
CTGGTCGTGTTAGTCGAGTTCTGTCGGCGCATTGGTCGGGAATATGACAACTTCCTGACCCGCCAATTTGAGCGC
CAAGCCCTACACGGCACGTTTGTCAGGAGATTTGAATCTGCCAGAACCGCCGTGACATTTCGCGCGACGCCGTTA
CAACAATTGACGAGGGCTGTGATTCATGCAGTCACGTTTGCGGGGGCTTATATCACCATGTTGTTGGCCATGTAC
TTCAATGTCTATGTGATTATTTGCATCTTCATTGGTGCGGGACTGGGCAAGTTCTTATGTGATTGGATGGTTGTC
ACAGTGGGAATAGATGACGTGCAGGAAGAGATACGGAAATTGGAGGAGACAACGATATGTTGTGATTGA
Gene >Pro_DTO377G3_2|g4780.t1
ATGGAGGGCATGGATTCCAGCACCAGCTCGAGCAGCTGCAAGGTTTCGGTGAGTGCCAAGATATTTGGACCTTGG
CACCTTTCAAGTGGATTCGCTGACCAAAGCCAGATGATGTTCAATTTCGACACCATCGATGCCTGTTTCCTGTCC
GCAGGATGGCAGATCAAGAACAATGGCATGTTTGCCGCAACCTGTATTGGCACAATTCTGCTGGTCGTGTTAGTC
GAGTTCTGTCGGCGCATTGGTCGGGAATATGACAACTTCCTGACCCGCCAATTTGAGCGCCAAGCCCTACACGGC
ACGTTTGTCAGGAGATTTGAATCTGCCAGAACCGCCGTGACATTTCGCGCGACGCCGTTACAACAATTGACGAGG
GCTGTGATTCATGCAGTCACGTTTGCGGGGGCTTATATCACCATGTTGTTGGCCATGTACTTCAATGTCTATGTG
ATTATTTGCATCTTCATTGGTGCGGGACTGGGCAAGTTCTTATGTGATTGGATGGTTGTCACAGTGGGAATAGAT
GACGTGCAGGAAGAGATACGGAAATTGGAGGAGACAACGATATGTTGTGATTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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