© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g4780.t1 |
| Gene name | |
| Location | scaffold_10:382451..383030 |
| Strand | - |
| Gene length (bp) | 579 |
| Transcript length (bp) | 519 |
| Coding sequence length (bp) | 519 |
| Protein length (aa) | 173 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04145 | Ctr | Ctr copper transporter family | 1.4E-31 | 17 | 145 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0035434 | copper ion transmembrane transport | Yes |
| GO:0005375 | copper ion transmembrane transporter activity | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0003674 | molecular_function | No |
| GO:0006825 | copper ion transport | No |
| GO:0055085 | transmembrane transport | No |
| GO:0006810 | transport | No |
| GO:0008150 | biological_process | No |
| GO:0005575 | cellular_component | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0051234 | establishment of localization | No |
| GO:0046915 | transition metal ion transmembrane transporter activity | No |
| GO:0098655 | cation transmembrane transport | No |
| GO:0034220 | ion transmembrane transport | No |
| GO:0008324 | cation transmembrane transporter activity | No |
| GO:0030001 | metal ion transport | No |
| GO:0022890 | inorganic cation transmembrane transporter activity | No |
| GO:0098660 | inorganic ion transmembrane transport | No |
| GO:0006812 | cation transport | No |
| GO:0006811 | ion transport | No |
| GO:0098662 | inorganic cation transmembrane transport | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0051179 | localization | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0005215 | transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0009987 | cellular process | No |
| GO:0046873 | metal ion transmembrane transporter activity | No |
| GO:0000041 | transition metal ion transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 27 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 39 | 58 | 19 |
| 2 | 118 | 140 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 45.15 | 20.04 | 70.26 |
| 5d_25C | Five days - 25 degrees Celsius | 67.39 | 33.55 | 101.24 |
| 7d_25C | Seven days - 25 degrees Celsius | 73.00 | 36.69 | 109.32 |
| 10d_25C | Ten days - 25 degrees Celsius | 68.33 | 34.06 | 102.60 |
| 7d_15C | Seven days - 15 degrees Celsius | 157.38 | 89.27 | 225.48 |
| 7d_30C | Seven days - 30 degrees Celsius | 117.45 | 63.78 | 171.11 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.186413 | no |
| 3d_25C | 7d_25C | 0.101296 | no |
| 3d_25C | 7d_15C | 0.000700 | yes |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.169602 | no |
| 5d_25C | 7d_25C | 0.839304 | no |
| 5d_25C | 7d_15C | 0.000700 | yes |
| 5d_25C | 7d_30C | 0.027278 | yes |
| 5d_25C | 10d_25C | 0.975132 | no |
| 7d_25C | 7d_15C | 0.001804 | yes |
| 7d_25C | 7d_30C | 0.064657 | no |
| 7d_25C | 10d_25C | 0.873182 | no |
| 7d_15C | 7d_30C | 0.245676 | no |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.030001 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4780.t1 MEGMDSSTSSSSCKVSMMFNFDTIDACFLSAGWQIKNNGMFAATCIGTILLVVLVEFCRRIGREYDNFLTRQFER QALHGTFVRRFESARTAVTFRATPLQQLTRAVIHAVTFAGAYITMLLAMYFNVYVIICIFIGAGLGKFLCDWMVV TVGIDDVQEEIRKLEETTICCD* |
| Coding | >Pro_DTO377G3_2|g4780.t1 ATGGAGGGCATGGATTCCAGCACCAGCTCGAGCAGCTGCAAGGTTTCGATGATGTTCAATTTCGACACCATCGAT GCCTGTTTCCTGTCCGCAGGATGGCAGATCAAGAACAATGGCATGTTTGCCGCAACCTGTATTGGCACAATTCTG CTGGTCGTGTTAGTCGAGTTCTGTCGGCGCATTGGTCGGGAATATGACAACTTCCTGACCCGCCAATTTGAGCGC CAAGCCCTACACGGCACGTTTGTCAGGAGATTTGAATCTGCCAGAACCGCCGTGACATTTCGCGCGACGCCGTTA CAACAATTGACGAGGGCTGTGATTCATGCAGTCACGTTTGCGGGGGCTTATATCACCATGTTGTTGGCCATGTAC TTCAATGTCTATGTGATTATTTGCATCTTCATTGGTGCGGGACTGGGCAAGTTCTTATGTGATTGGATGGTTGTC ACAGTGGGAATAGATGACGTGCAGGAAGAGATACGGAAATTGGAGGAGACAACGATATGTTGTGATTGA |
| Transcript | >Pro_DTO377G3_2|g4780.t1 ATGGAGGGCATGGATTCCAGCACCAGCTCGAGCAGCTGCAAGGTTTCGATGATGTTCAATTTCGACACCATCGAT GCCTGTTTCCTGTCCGCAGGATGGCAGATCAAGAACAATGGCATGTTTGCCGCAACCTGTATTGGCACAATTCTG CTGGTCGTGTTAGTCGAGTTCTGTCGGCGCATTGGTCGGGAATATGACAACTTCCTGACCCGCCAATTTGAGCGC CAAGCCCTACACGGCACGTTTGTCAGGAGATTTGAATCTGCCAGAACCGCCGTGACATTTCGCGCGACGCCGTTA CAACAATTGACGAGGGCTGTGATTCATGCAGTCACGTTTGCGGGGGCTTATATCACCATGTTGTTGGCCATGTAC TTCAATGTCTATGTGATTATTTGCATCTTCATTGGTGCGGGACTGGGCAAGTTCTTATGTGATTGGATGGTTGTC ACAGTGGGAATAGATGACGTGCAGGAAGAGATACGGAAATTGGAGGAGACAACGATATGTTGTGATTGA |
| Gene | >Pro_DTO377G3_2|g4780.t1 ATGGAGGGCATGGATTCCAGCACCAGCTCGAGCAGCTGCAAGGTTTCGGTGAGTGCCAAGATATTTGGACCTTGG CACCTTTCAAGTGGATTCGCTGACCAAAGCCAGATGATGTTCAATTTCGACACCATCGATGCCTGTTTCCTGTCC GCAGGATGGCAGATCAAGAACAATGGCATGTTTGCCGCAACCTGTATTGGCACAATTCTGCTGGTCGTGTTAGTC GAGTTCTGTCGGCGCATTGGTCGGGAATATGACAACTTCCTGACCCGCCAATTTGAGCGCCAAGCCCTACACGGC ACGTTTGTCAGGAGATTTGAATCTGCCAGAACCGCCGTGACATTTCGCGCGACGCCGTTACAACAATTGACGAGG GCTGTGATTCATGCAGTCACGTTTGCGGGGGCTTATATCACCATGTTGTTGGCCATGTACTTCAATGTCTATGTG ATTATTTGCATCTTCATTGGTGCGGGACTGGGCAAGTTCTTATGTGATTGGATGGTTGTCACAGTGGGAATAGAT GACGTGCAGGAAGAGATACGGAAATTGGAGGAGACAACGATATGTTGTGATTGA |