© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4778.t1 |
| Gene name | |
| Location | scaffold_10:374005..375080 |
| Strand | - |
| Gene length (bp) | 1075 |
| Transcript length (bp) | 834 |
| Coding sequence length (bp) | 834 |
| Protein length (aa) | 278 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01184 | Gpr1_Fun34_YaaH | GPR1/FUN34/yaaH family | 6.8E-27 | 52 | 259 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 53 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 61 | 80 | 19 |
| 2 | 90 | 112 | 22 |
| 3 | 119 | 141 | 22 |
| 4 | 161 | 180 | 19 |
| 5 | 187 | 209 | 22 |
| 6 | 224 | 241 | 17 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 1.19 | 0.00 | 2.53 |
| 5d_25C | Five days - 25 degrees Celsius | 1.57 | 0.00 | 3.14 |
| 7d_25C | Seven days - 25 degrees Celsius | 1.98 | 0.06 | 3.89 |
| 10d_25C | Ten days - 25 degrees Celsius | 3.17 | 0.41 | 5.92 |
| 7d_15C | Seven days - 15 degrees Celsius | 3.57 | 0.42 | 6.73 |
| 7d_30C | Seven days - 30 degrees Celsius | 1.40 | 0.00 | 2.85 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.729436 | no |
| 3d_25C | 7d_25C | 0.474659 | no |
| 3d_25C | 7d_15C | 0.065461 | no |
| 3d_25C | 7d_30C | 0.852267 | no |
| 3d_25C | 10d_25C | 0.099736 | no |
| 5d_25C | 7d_25C | 0.764701 | no |
| 5d_25C | 7d_15C | 0.130632 | no |
| 5d_25C | 7d_30C | 0.899727 | no |
| 5d_25C | 10d_25C | 0.209528 | no |
| 7d_25C | 7d_15C | 0.289559 | no |
| 7d_25C | 7d_30C | 0.629213 | no |
| 7d_25C | 10d_25C | 0.433175 | no |
| 7d_15C | 7d_30C | 0.084097 | no |
| 7d_15C | 10d_25C | 0.868461 | no |
| 7d_30C | 10d_25C | 0.136934 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4778.t1 MSDDTIGDKPETSTAEMLRRYQTTDSVMLPIPRDVFEKLYLSPKTPNAGKLRSTFGNPTPISLMGFLLSATPTAM LTMGWRGAGGNGGAILPVYIFFGAMVQIFGAIGEWILGNTFSCALFFTYGTFWLVQGTSLMPFFAVGTMYSSDGN TLKGMETAEYSATVGFYYVTLALITFVYTICALRTNVCLFLALFLLVITFGLFSGIYFQMALGNLVLAAKLQKAA GAFTFALCLPIWHIFIAQILEAVDFPIALPVGDLSTVILGRSQKARKCEVEG* |
| Coding | >Pro_DTO377G3_2|g4778.t1 ATGTCCGACGATACTATCGGCGACAAGCCAGAGACCTCTACGGCAGAAATGCTTCGTCGGTATCAGACCACCGAC AGTGTTATGCTTCCTATACCACGGGATGTTTTTGAAAAGCTATACCTTAGCCCCAAGACGCCAAATGCAGGAAAG CTGCGTTCCACATTTGGAAATCCCACGCCGATTTCATTGATGGGTTTCTTGCTGTCTGCGACGCCGACCGCAATG CTTACCATGGGATGGAGAGGAGCAGGTGGAAACGGTGGTGCCATTTTACCAGTCTATATCTTCTTCGGTGCAATG GTACAAATATTCGGAGCAATTGGCGAATGGATTCTAGGGAATACATTTTCTTGCGCATTATTCTTCACATATGGT ACATTCTGGCTGGTTCAGGGAACATCGCTCATGCCATTCTTTGCCGTTGGCACAATGTACTCGTCTGATGGCAAC ACACTGAAAGGCATGGAGACCGCTGAATACAGCGCAACTGTCGGTTTCTACTACGTCACTCTCGCACTCATCACC TTCGTATACACAATTTGCGCCCTCCGCACGAACGTCTGCCTCTTCCTCGCGCTCTTTCTGCTTGTGATCACATTT GGATTATTTTCAGGAATATATTTCCAGATGGCGCTGGGGAACCTAGTGCTGGCGGCCAAATTACAAAAGGCGGCT GGTGCGTTCACCTTTGCCCTCTGTCTTCCGATTTGGCATATTTTCATTGCGCAGATCCTCGAAGCGGTCGATTTC CCCATCGCACTGCCAGTGGGCGACCTAAGTACAGTCATCCTGGGGAGGAGTCAGAAAGCCCGGAAGTGTGAGGTT GAGGGGTAG |
| Transcript | >Pro_DTO377G3_2|g4778.t1 ATGTCCGACGATACTATCGGCGACAAGCCAGAGACCTCTACGGCAGAAATGCTTCGTCGGTATCAGACCACCGAC AGTGTTATGCTTCCTATACCACGGGATGTTTTTGAAAAGCTATACCTTAGCCCCAAGACGCCAAATGCAGGAAAG CTGCGTTCCACATTTGGAAATCCCACGCCGATTTCATTGATGGGTTTCTTGCTGTCTGCGACGCCGACCGCAATG CTTACCATGGGATGGAGAGGAGCAGGTGGAAACGGTGGTGCCATTTTACCAGTCTATATCTTCTTCGGTGCAATG GTACAAATATTCGGAGCAATTGGCGAATGGATTCTAGGGAATACATTTTCTTGCGCATTATTCTTCACATATGGT ACATTCTGGCTGGTTCAGGGAACATCGCTCATGCCATTCTTTGCCGTTGGCACAATGTACTCGTCTGATGGCAAC ACACTGAAAGGCATGGAGACCGCTGAATACAGCGCAACTGTCGGTTTCTACTACGTCACTCTCGCACTCATCACC TTCGTATACACAATTTGCGCCCTCCGCACGAACGTCTGCCTCTTCCTCGCGCTCTTTCTGCTTGTGATCACATTT GGATTATTTTCAGGAATATATTTCCAGATGGCGCTGGGGAACCTAGTGCTGGCGGCCAAATTACAAAAGGCGGCT GGTGCGTTCACCTTTGCCCTCTGTCTTCCGATTTGGCATATTTTCATTGCGCAGATCCTCGAAGCGGTCGATTTC CCCATCGCACTGCCAGTGGGCGACCTAAGTACAGTCATCCTGGGGAGGAGTCAGAAAGCCCGGAAGTGTGAGGTT GAGGGGTAG |
| Gene | >Pro_DTO377G3_2|g4778.t1 ATGTCCGACGATACTATCGGCGACAAGCCAGAGACCTCTACGGCAGAAATGCTTCGTCGGTATCAGACCACCGAC AGTGTTATGCTTCCTATACCACGGGATGTTTTTGAAAAGCTATACCTTAGCCCCAAGACGCCAAATGCAGGAAAG CTGCGTTCCACATTTGGAAATCCCACGCCGATTTCATTGATGGGTTTCTTGCTGTCTGCGACGCCGACCGCAATG CTTACCATGGGATGGAGAGGAGCAGGTGGAAACGGTGGTGCCATTTTGTAAGAGAGGCCATACTGATGCTGCAAG GAAAACAGTACTAACAACTCCCTCCCACAGACCAGTCTATATCTTCTTCGGTGCAATGGTACAAATATTCGGAGC AATTGGCGAATGGATTCTAGGGAATACATTTTCTTGCGCATTATTCTTCACATATGGTATGTGTAGTTCGTCATG GATTAGGGACGCATCCATGCATTTGCTAACTGGAGCTCATAGGTACATTCTGGCTGGTTCAGGGAACATCGCTCA TGCCATTCTTTGCCGTTGGCACAATGTACTCGTCTGATGGCAACACACTGAAAGGCATGGAGACCGCTGAATACA GCGCAACTGTCGGTGAGTCTTACCTTTCACACCCCATCATGTACATGTGCACGTCCTGACCGAATATATTACAGG TTTCTACTACGTCACTCTCGCACTCATCACCTTCGTATACACAATTTGCGCCCTCCGCACGAACGTCTGCCTCTT CCTCGCGCTCTTTCTGCTTGTGATCACATTTGGATTATTTTCAGGAATATATTTCCAGATGGCGCTGGGGAACCT AGTGCTGGCGGCCAAATTACAAAAGGTATATTGCAAATATGGTATTGTTCTCTTCGATATTAAATGTGTACTGAT TTATCAATAGGCGGCTGGTGCGTTCACCTTTGCCCTCTGTCTTCCGATTTGGCATATTTTCATTGCGCAGATCCT CGAAGCGGTCGATTTCCCCATCGCACTGCCAGTGGGCGACCTAAGTACAGTCATCCTGGGGAGGAGTCAGAAAGC CCGGAAGTGTGAGGTTGAGGGGTAG |