Fungal Genomics

at Utrecht University

General Properties

Protein ID	Pro_DTO377G3_2\|g4778.t1
Gene name
Location	scaffold_10:374005..375080
Strand	-
Gene length (bp)	1075
Transcript length (bp)	834
Coding sequence length (bp)	834
Protein length (aa)	278

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF01184	Gpr1_Fun34_YaaH	GPR1/FUN34/yaaH family	6.8E-27	52	259

GO

GO Term	Description	Terminal node
GO:0016021	integral component of membrane	Yes
GO:0110165	cellular anatomical entity	No
GO:0005575	cellular_component	No
GO:0031224	intrinsic component of membrane	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 53	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	61	80	19
2	90	112	22
3	119	141	22
4	161	180	19
5	187	209	22
6	224	241	17

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Click here for more information

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Pro_DTO377G3_2\|g4778.t1 MSDDTIGDKPETSTAEMLRRYQTTDSVMLPIPRDVFEKLYLSPKTPNAGKLRSTFGNPTPISLMGFLLSATPTAM LTMGWRGAGGNGGAILPVYIFFGAMVQIFGAIGEWILGNTFSCALFFTYGTFWLVQGTSLMPFFAVGTMYSSDGN TLKGMETAEYSATVGFYYVTLALITFVYTICALRTNVCLFLALFLLVITFGLFSGIYFQMALGNLVLAAKLQKAA GAFTFALCLPIWHIFIAQILEAVDFPIALPVGDLSTVILGRSQKARKCEVEG*
Coding	>Pro_DTO377G3_2\|g4778.t1 ATGTCCGACGATACTATCGGCGACAAGCCAGAGACCTCTACGGCAGAAATGCTTCGTCGGTATCAGACCACCGAC AGTGTTATGCTTCCTATACCACGGGATGTTTTTGAAAAGCTATACCTTAGCCCCAAGACGCCAAATGCAGGAAAG CTGCGTTCCACATTTGGAAATCCCACGCCGATTTCATTGATGGGTTTCTTGCTGTCTGCGACGCCGACCGCAATG CTTACCATGGGATGGAGAGGAGCAGGTGGAAACGGTGGTGCCATTTTACCAGTCTATATCTTCTTCGGTGCAATG GTACAAATATTCGGAGCAATTGGCGAATGGATTCTAGGGAATACATTTTCTTGCGCATTATTCTTCACATATGGT ACATTCTGGCTGGTTCAGGGAACATCGCTCATGCCATTCTTTGCCGTTGGCACAATGTACTCGTCTGATGGCAAC ACACTGAAAGGCATGGAGACCGCTGAATACAGCGCAACTGTCGGTTTCTACTACGTCACTCTCGCACTCATCACC TTCGTATACACAATTTGCGCCCTCCGCACGAACGTCTGCCTCTTCCTCGCGCTCTTTCTGCTTGTGATCACATTT GGATTATTTTCAGGAATATATTTCCAGATGGCGCTGGGGAACCTAGTGCTGGCGGCCAAATTACAAAAGGCGGCT GGTGCGTTCACCTTTGCCCTCTGTCTTCCGATTTGGCATATTTTCATTGCGCAGATCCTCGAAGCGGTCGATTTC CCCATCGCACTGCCAGTGGGCGACCTAAGTACAGTCATCCTGGGGAGGAGTCAGAAAGCCCGGAAGTGTGAGGTT GAGGGGTAG
Transcript	>Pro_DTO377G3_2\|g4778.t1 ATGTCCGACGATACTATCGGCGACAAGCCAGAGACCTCTACGGCAGAAATGCTTCGTCGGTATCAGACCACCGAC AGTGTTATGCTTCCTATACCACGGGATGTTTTTGAAAAGCTATACCTTAGCCCCAAGACGCCAAATGCAGGAAAG CTGCGTTCCACATTTGGAAATCCCACGCCGATTTCATTGATGGGTTTCTTGCTGTCTGCGACGCCGACCGCAATG CTTACCATGGGATGGAGAGGAGCAGGTGGAAACGGTGGTGCCATTTTACCAGTCTATATCTTCTTCGGTGCAATG GTACAAATATTCGGAGCAATTGGCGAATGGATTCTAGGGAATACATTTTCTTGCGCATTATTCTTCACATATGGT ACATTCTGGCTGGTTCAGGGAACATCGCTCATGCCATTCTTTGCCGTTGGCACAATGTACTCGTCTGATGGCAAC ACACTGAAAGGCATGGAGACCGCTGAATACAGCGCAACTGTCGGTTTCTACTACGTCACTCTCGCACTCATCACC TTCGTATACACAATTTGCGCCCTCCGCACGAACGTCTGCCTCTTCCTCGCGCTCTTTCTGCTTGTGATCACATTT GGATTATTTTCAGGAATATATTTCCAGATGGCGCTGGGGAACCTAGTGCTGGCGGCCAAATTACAAAAGGCGGCT GGTGCGTTCACCTTTGCCCTCTGTCTTCCGATTTGGCATATTTTCATTGCGCAGATCCTCGAAGCGGTCGATTTC CCCATCGCACTGCCAGTGGGCGACCTAAGTACAGTCATCCTGGGGAGGAGTCAGAAAGCCCGGAAGTGTGAGGTT GAGGGGTAG
Gene	>Pro_DTO377G3_2\|g4778.t1 ATGTCCGACGATACTATCGGCGACAAGCCAGAGACCTCTACGGCAGAAATGCTTCGTCGGTATCAGACCACCGAC AGTGTTATGCTTCCTATACCACGGGATGTTTTTGAAAAGCTATACCTTAGCCCCAAGACGCCAAATGCAGGAAAG CTGCGTTCCACATTTGGAAATCCCACGCCGATTTCATTGATGGGTTTCTTGCTGTCTGCGACGCCGACCGCAATG CTTACCATGGGATGGAGAGGAGCAGGTGGAAACGGTGGTGCCATTTTGTAAGAGAGGCCATACTGATGCTGCAAG GAAAACAGTACTAACAACTCCCTCCCACAGACCAGTCTATATCTTCTTCGGTGCAATGGTACAAATATTCGGAGC AATTGGCGAATGGATTCTAGGGAATACATTTTCTTGCGCATTATTCTTCACATATGGTATGTGTAGTTCGTCATG GATTAGGGACGCATCCATGCATTTGCTAACTGGAGCTCATAGGTACATTCTGGCTGGTTCAGGGAACATCGCTCA TGCCATTCTTTGCCGTTGGCACAATGTACTCGTCTGATGGCAACACACTGAAAGGCATGGAGACCGCTGAATACA GCGCAACTGTCGGTGAGTCTTACCTTTCACACCCCATCATGTACATGTGCACGTCCTGACCGAATATATTACAGG TTTCTACTACGTCACTCTCGCACTCATCACCTTCGTATACACAATTTGCGCCCTCCGCACGAACGTCTGCCTCTT CCTCGCGCTCTTTCTGCTTGTGATCACATTTGGATTATTTTCAGGAATATATTTCCAGATGGCGCTGGGGAACCT AGTGCTGGCGGCCAAATTACAAAAGGTATATTGCAAATATGGTATTGTTCTCTTCGATATTAAATGTGTACTGAT TTATCAATAGGCGGCTGGTGCGTTCACCTTTGCCCTCTGTCTTCCGATTTGGCATATTTTCATTGCGCAGATCCT CGAAGCGGTCGATTTCCCCATCGCACTGCCAGTGGGCGACCTAAGTACAGTCATCCTGGGGAGGAGTCAGAAAGC CCGGAAGTGTGAGGTTGAGGGGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail