Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g4777.t1
Gene name
Locationscaffold_10:372743..373717
Strand-
Gene length (bp)974
Transcript length (bp)909
Coding sequence length (bp)909
Protein length (aa) 303

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF12874 zf-met Zinc-finger of C2H2 type 2.5E-03 29 48
PF12874 zf-met Zinc-finger of C2H2 type 3.0E-03 57 81
PF12874 zf-met Zinc-finger of C2H2 type 6.6E-02 88 110
PF12874 zf-met Zinc-finger of C2H2 type 9.0E-03 114 137
PF12874 zf-met Zinc-finger of C2H2 type 7.9E-06 219 243
PF12171 zf-C2H2_jaz Zinc-finger double-stranded RNA-binding 4.4E-05 114 138
PF13912 zf-C2H2_6 C2H2-type zinc finger 6.2E-02 29 53
PF13912 zf-C2H2_6 C2H2-type zinc finger 7.2E-02 220 237

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 18 0.45

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
C2H2 zinc finger

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g4777.t1
MFECITCDAVFWDQDDCDEHMDDERHWIECETCNRSFRTQNACNQHMNAVDHWAPTFDCETCNSTFRTQHAANNH
MNAKSHWLPKVPCEACPMKFYTQQAVENHMSAKGHYKNYCQECSRQFMNANCLRQHLNSKIHRGTNIACPFCRVG
FVTASGVSHHLESGACPQAQGLNRDRIHRIIQQLDPNGIVCKKQIAWHGEHEQDMTYLVTDNAWNGSCWVCYLCK
KGFNSPKALGSHVNSPVHNEKVYHCLKRGCPKEFHSLASLFNHLESESCGFIRFEGVQQVHRQLNDAIMGRRTIT
GF*
Coding >Pro_DTO377G3_2|g4777.t1
ATGTTCGAATGCATCACCTGCGATGCAGTATTCTGGGATCAGGATGACTGTGATGAGCATATGGATGACGAACGT
CACTGGATCGAATGTGAAACATGCAATCGATCGTTCCGCACCCAGAACGCTTGCAATCAGCATATGAATGCTGTA
GACCACTGGGCGCCGACTTTCGACTGTGAAACTTGCAACAGCACCTTCCGCACTCAACACGCCGCTAACAACCAT
ATGAACGCGAAGAGTCATTGGCTCCCGAAAGTTCCATGTGAGGCATGCCCGATGAAATTCTACACGCAGCAGGCC
GTGGAGAATCATATGAGCGCCAAAGGACATTACAAGAACTACTGCCAAGAATGCAGCCGTCAATTTATGAACGCG
AACTGTTTGCGCCAGCACCTGAATTCCAAGATCCATCGCGGCACCAACATTGCGTGTCCATTCTGTCGGGTTGGC
TTCGTCACTGCCAGCGGTGTCTCCCATCATCTTGAGTCTGGTGCCTGCCCTCAAGCTCAAGGCTTGAACCGCGAC
CGCATCCACCGCATTATTCAACAGCTTGATCCGAATGGTATTGTCTGCAAGAAGCAGATCGCGTGGCACGGTGAA
CATGAACAGGACATGACATACCTGGTCACCGACAATGCCTGGAATGGTAGCTGCTGGGTGTGTTACCTATGCAAA
AAGGGGTTCAACTCGCCAAAAGCGCTGGGGTCGCATGTCAACTCACCCGTCCACAATGAGAAGGTCTACCACTGC
CTCAAGCGAGGCTGTCCGAAGGAGTTCCACTCCCTGGCTAGTCTGTTCAACCACTTGGAAAGTGAATCGTGTGGA
TTCATTCGGTTCGAGGGGGTTCAACAGGTTCACAGACAGCTGAACGATGCCATCATGGGCCGCCGGACGATTACT
GGATTCTAG
Transcript >Pro_DTO377G3_2|g4777.t1
ATGTTCGAATGCATCACCTGCGATGCAGTATTCTGGGATCAGGATGACTGTGATGAGCATATGGATGACGAACGT
CACTGGATCGAATGTGAAACATGCAATCGATCGTTCCGCACCCAGAACGCTTGCAATCAGCATATGAATGCTGTA
GACCACTGGGCGCCGACTTTCGACTGTGAAACTTGCAACAGCACCTTCCGCACTCAACACGCCGCTAACAACCAT
ATGAACGCGAAGAGTCATTGGCTCCCGAAAGTTCCATGTGAGGCATGCCCGATGAAATTCTACACGCAGCAGGCC
GTGGAGAATCATATGAGCGCCAAAGGACATTACAAGAACTACTGCCAAGAATGCAGCCGTCAATTTATGAACGCG
AACTGTTTGCGCCAGCACCTGAATTCCAAGATCCATCGCGGCACCAACATTGCGTGTCCATTCTGTCGGGTTGGC
TTCGTCACTGCCAGCGGTGTCTCCCATCATCTTGAGTCTGGTGCCTGCCCTCAAGCTCAAGGCTTGAACCGCGAC
CGCATCCACCGCATTATTCAACAGCTTGATCCGAATGGTATTGTCTGCAAGAAGCAGATCGCGTGGCACGGTGAA
CATGAACAGGACATGACATACCTGGTCACCGACAATGCCTGGAATGGTAGCTGCTGGGTGTGTTACCTATGCAAA
AAGGGGTTCAACTCGCCAAAAGCGCTGGGGTCGCATGTCAACTCACCCGTCCACAATGAGAAGGTCTACCACTGC
CTCAAGCGAGGCTGTCCGAAGGAGTTCCACTCCCTGGCTAGTCTGTTCAACCACTTGGAAAGTGAATCGTGTGGA
TTCATTCGGTTCGAGGGGGTTCAACAGGTTCACAGACAGCTGAACGATGCCATCATGGGCCGCCGGACGATTACT
GGATTCTAG
Gene >Pro_DTO377G3_2|g4777.t1
ATGTTCGAATGCATCACCTGCGATGCAGTATTCTGGGATCAGGATGACTGTGATGAGCATATGGATGACGAACGT
CACTGGATCGAATGTGAAACATGCAATCGATCGTTCCGCACCCAGAACGCTTGCAATCAGCATATGAATGCTGTA
GACCACTGGGCGCCGACTTTCGACTGTGAAACTTGCAACAGCACCTTCCGCACTCAACACGCCGCTAACAACCAT
ATGAACGCGAAGAGTCATTGGCTCCCGAAAGTTCCATGTGAGGCATGCCCGATGAAATTCTACACGCAGCAGGCC
GTGGAGAATCATATGAGCGCCAAAGGACATTACAAGAACTACTGCCAAGAATGCAGCCGTCAATTTATGAACGCG
AACTGTTTGCGCCAGGTAGGCGAGCTGATATGATCCGAGAGAAACTTTGAACCCGTTCCACTCACGTCTTTATCT
CATAGCACCTGAATTCCAAGATCCATCGCGGCACCAACATTGCGTGTCCATTCTGTCGGGTTGGCTTCGTCACTG
CCAGCGGTGTCTCCCATCATCTTGAGTCTGGTGCCTGCCCTCAAGCTCAAGGCTTGAACCGCGACCGCATCCACC
GCATTATTCAACAGCTTGATCCGAATGGTATTGTCTGCAAGAAGCAGATCGCGTGGCACGGTGAACATGAACAGG
ACATGACATACCTGGTCACCGACAATGCCTGGAATGGTAGCTGCTGGGTGTGTTACCTATGCAAAAAGGGGTTCA
ACTCGCCAAAAGCGCTGGGGTCGCATGTCAACTCACCCGTCCACAATGAGAAGGTCTACCACTGCCTCAAGCGAG
GCTGTCCGAAGGAGTTCCACTCCCTGGCTAGTCTGTTCAACCACTTGGAAAGTGAATCGTGTGGATTCATTCGGT
TCGAGGGGGTTCAACAGGTTCACAGACAGCTGAACGATGCCATCATGGGCCGCCGGACGATTACTGGATTCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail