© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4752.t1 |
| Gene name | |
| Location | scaffold_10:308710..309597 |
| Strand | - |
| Gene length (bp) | 887 |
| Transcript length (bp) | 840 |
| Coding sequence length (bp) | 840 |
| Protein length (aa) | 280 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00230 | MIP | Major intrinsic protein | 1.5E-33 | 7 | 251 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0015267 | channel activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0022803 | passive transmembrane transporter activity | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
| 2 | 39 | 58 | 19 |
| 3 | 90 | 112 | 22 |
| 4 | 152 | 171 | 19 |
| 5 | 184 | 206 | 22 |
| 6 | 226 | 248 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 34.36 | 16.63 | 52.09 |
| 5d_25C | Five days - 25 degrees Celsius | 24.73 | 10.86 | 38.59 |
| 7d_25C | Seven days - 25 degrees Celsius | 21.60 | 9.08 | 34.12 |
| 10d_25C | Ten days - 25 degrees Celsius | 21.29 | 8.58 | 34.01 |
| 7d_15C | Seven days - 15 degrees Celsius | 26.34 | 10.88 | 41.80 |
| 7d_30C | Seven days - 30 degrees Celsius | 32.51 | 15.15 | 49.87 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.309428 | no |
| 3d_25C | 7d_25C | 0.134341 | no |
| 3d_25C | 7d_15C | 0.440632 | no |
| 3d_25C | 7d_30C | 0.901432 | no |
| 3d_25C | 10d_25C | 0.132536 | no |
| 5d_25C | 7d_25C | 0.746976 | no |
| 5d_25C | 7d_15C | 0.893072 | no |
| 5d_25C | 7d_30C | 0.424085 | no |
| 5d_25C | 10d_25C | 0.729094 | no |
| 7d_25C | 7d_15C | 0.620168 | no |
| 7d_25C | 7d_30C | 0.205242 | no |
| 7d_25C | 10d_25C | 0.979739 | no |
| 7d_15C | 7d_30C | 0.571335 | no |
| 7d_15C | 10d_25C | 0.599442 | no |
| 7d_30C | 10d_25C | 0.205431 | no |
| Orthofinder run ID | 2 |
| Orthogroup | 7651 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4752.t1 MIPRRALKPYAAEFLGTALLIVIGDGVVAQCLLSDYNYGTWLSINLAWAAAVCLSGYLSDPGPTINPAVTLCLAL VRPSEGQWKQIPGKLAAQFLGGFVGAAIVYINYRSAIKAWDPEYTIPGGSILSPVGHHSAGIFSTYPGAFFQSNW EAVFSEMLGSAVLMFGLLSISDPGNARRFPAPQIAVFLLLLMIGAALGWQTGYAINPARDFGPRLFSAIVYGREV FTAANYYFVVPLFAPIVGCVLGAATYDGMLFEGEGSRIADALDEAEDHGSLRLQ* |
| Coding | >Pro_DTO377G3_2|g4752.t1 ATGATCCCTCGTCGGGCACTGAAGCCATACGCGGCTGAATTTCTCGGGACTGCTCTGCTAATCGTTATCGGGGAT GGAGTTGTCGCCCAATGTCTGCTCTCCGACTACAACTACGGCACCTGGCTGTCTATCAACCTCGCCTGGGCTGCT GCCGTGTGTCTATCCGGCTATTTATCCGATCCCGGCCCGACCATCAACCCGGCCGTGACTCTTTGCCTTGCCCTT GTACGTCCATCTGAAGGGCAATGGAAACAAATCCCAGGCAAGCTGGCTGCGCAGTTCCTGGGCGGGTTTGTCGGA GCTGCCATCGTATATATCAACTACCGTTCGGCGATTAAAGCTTGGGATCCTGAATACACCATTCCCGGCGGATCA ATCCTGAGCCCGGTCGGTCACCATTCAGCGGGCATCTTCTCGACCTACCCAGGTGCCTTCTTCCAGTCGAACTGG GAGGCTGTCTTTTCTGAGATGCTGGGCTCAGCTGTGCTGATGTTCGGCCTTCTCAGCATATCCGATCCTGGAAAT GCCCGTCGATTTCCTGCTCCCCAGATCGCTGTCTTTCTGCTGCTGCTCATGATCGGAGCAGCATTGGGCTGGCAG ACCGGTTATGCCATTAACCCAGCCAGAGATTTTGGCCCGAGATTGTTCTCTGCTATCGTCTATGGCCGAGAGGTG TTTACGGCGGCCAACTACTATTTCGTTGTTCCCCTCTTCGCCCCTATTGTTGGCTGCGTTTTAGGCGCGGCGACT TACGACGGGATGCTGTTCGAGGGAGAGGGGTCGCGTATTGCCGATGCGCTAGATGAAGCCGAGGATCACGGATCT CTTCGACTGCAGTGA |
| Transcript | >Pro_DTO377G3_2|g4752.t1 ATGATCCCTCGTCGGGCACTGAAGCCATACGCGGCTGAATTTCTCGGGACTGCTCTGCTAATCGTTATCGGGGAT GGAGTTGTCGCCCAATGTCTGCTCTCCGACTACAACTACGGCACCTGGCTGTCTATCAACCTCGCCTGGGCTGCT GCCGTGTGTCTATCCGGCTATTTATCCGATCCCGGCCCGACCATCAACCCGGCCGTGACTCTTTGCCTTGCCCTT GTACGTCCATCTGAAGGGCAATGGAAACAAATCCCAGGCAAGCTGGCTGCGCAGTTCCTGGGCGGGTTTGTCGGA GCTGCCATCGTATATATCAACTACCGTTCGGCGATTAAAGCTTGGGATCCTGAATACACCATTCCCGGCGGATCA ATCCTGAGCCCGGTCGGTCACCATTCAGCGGGCATCTTCTCGACCTACCCAGGTGCCTTCTTCCAGTCGAACTGG GAGGCTGTCTTTTCTGAGATGCTGGGCTCAGCTGTGCTGATGTTCGGCCTTCTCAGCATATCCGATCCTGGAAAT GCCCGTCGATTTCCTGCTCCCCAGATCGCTGTCTTTCTGCTGCTGCTCATGATCGGAGCAGCATTGGGCTGGCAG ACCGGTTATGCCATTAACCCAGCCAGAGATTTTGGCCCGAGATTGTTCTCTGCTATCGTCTATGGCCGAGAGGTG TTTACGGCGGCCAACTACTATTTCGTTGTTCCCCTCTTCGCCCCTATTGTTGGCTGCGTTTTAGGCGCGGCGACT TACGACGGGATGCTGTTCGAGGGAGAGGGGTCGCGTATTGCCGATGCGCTAGATGAAGCCGAGGATCACGGATCT CTTCGACTGCAGTGA |
| Gene | >Pro_DTO377G3_2|g4752.t1 ATGATCCCTCGTCGGGCACTGAAGCCATACGCGGCTGAATTTCTCGGGACTGCTCTGCTAATCGTTATCGGGGAT GGAGTTGTCGCCCAATGTCTGCTCTCCGACTACAACTACGGCACCTGGCTGTCTATCAACCTCGCCTGGGCTGCT GCCGTGTGTCTATCCGGCTATTTATCCGATCCCGGCCCGACCATCAACCCGGCCGTGACTCTTTGCCTTGCCCTT GTACGTCCATCTGAAGGGCAATGGAAACAAATCCCAGGCAAGCTGGCTGCGCAGTTCCTGGGCGGGTTTGTCGGA GCTGCCATCGTATATATCAACTACCGTTCGGCGATTAAAGCTTGGGATCCTGAATACACCATTCCCGGCGGATCA ATCCTGAGCCCGGTCGGTCACCATTCAGCGGGCATCTTCTCGACCTACCCAGGTGCCTTCTTCCAGTCGAACTGG GAGGCTGTCTTTTCTGAGATGCTGGGCTCAGCTGTGCTGATGTTCGGCCTTCTCAGCATATCCGATCCTGGAAAT GCCCGTCGATTTCCTGCTCCCCAGATCGCTGTCTTTCTGCTGCTGCTCATGATCGGAGCAGCATTGGGCTGGCAG ACCGGTTATGTATGTTCCCAGGTTATCAGGTTAGGAAATCGTACTAATAAAACCAGGCCATTAACCCAGCCAGAG ATTTTGGCCCGAGATTGTTCTCTGCTATCGTCTATGGCCGAGAGGTGTTTACGGCGGCCAACTACTATTTCGTTG TTCCCCTCTTCGCCCCTATTGTTGGCTGCGTTTTAGGCGCGGCGACTTACGACGGGATGCTGTTCGAGGGAGAGG GGTCGCGTATTGCCGATGCGCTAGATGAAGCCGAGGATCACGGATCTCTTCGACTGCAGTGA |