© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4750.t1 |
| Gene name | |
| Location | scaffold_10:303552..304469 |
| Strand | - |
| Gene length (bp) | 917 |
| Transcript length (bp) | 804 |
| Coding sequence length (bp) | 804 |
| Protein length (aa) | 268 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03328 | HpcH_HpaI | HpcH/HpaI aldolase/citrate lyase family | 7.1E-30 | 28 | 216 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003824 | catalytic activity | Yes |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 36 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 2.70 | 0.33 | 5.07 |
| 5d_25C | Five days - 25 degrees Celsius | 6.19 | 1.61 | 10.77 |
| 7d_25C | Seven days - 25 degrees Celsius | 5.45 | 1.18 | 9.72 |
| 10d_25C | Ten days - 25 degrees Celsius | 5.80 | 1.45 | 10.14 |
| 7d_15C | Seven days - 15 degrees Celsius | 1.05 | 0.00 | 2.25 |
| 7d_30C | Seven days - 30 degrees Celsius | 12.29 | 4.17 | 20.40 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.066809 | no |
| 3d_25C | 7d_25C | 0.142948 | no |
| 3d_25C | 7d_15C | 0.125542 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.094279 | no |
| 5d_25C | 7d_25C | 0.833875 | no |
| 5d_25C | 7d_15C | 0.003625 | yes |
| 5d_25C | 7d_30C | 0.067447 | no |
| 5d_25C | 10d_25C | 0.918136 | no |
| 7d_25C | 7d_15C | 0.008469 | yes |
| 7d_25C | 7d_30C | 0.039770 | yes |
| 7d_25C | 10d_25C | 0.923975 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.008807 | yes |
| 7d_30C | 10d_25C | 0.041414 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4750.t1 MGSSYTNNLLQKTAKGQICKAFGIRLVTNPQVVQLAANSGYDALFIDLEHSTLSLNDASLLCMAGLGSGITPFVR VPYQCGDGFVQRVLDGGAMGVIFPHIHNKDDALSAVSICKYPPTGKRSMTGQLPYFRLQSTPVGVFTQENNSNAS SVFVMIETRESIDNVDEIASVDGIDVLLIGSNDLSTELGVPAQFKSDGFQSAVEAVSRACKKHGKTFGLAGIYEN EELHDWALNKLGAGFILVQQDSGILARAGKDCANAITLLTGR* |
| Coding | >Pro_DTO377G3_2|g4750.t1 ATGGGTTCCAGCTACACCAATAACCTGCTGCAGAAAACGGCGAAGGGCCAAATCTGCAAGGCATTCGGTATCCGG CTAGTCACCAACCCCCAAGTGGTCCAGTTGGCGGCGAACAGTGGATACGATGCGCTCTTTATCGACCTAGAACAC TCGACGCTATCTCTCAATGATGCAAGTCTGCTGTGTATGGCGGGCCTGGGTTCAGGTATCACACCCTTTGTCCGC GTCCCCTACCAGTGTGGCGACGGCTTCGTGCAGCGCGTCTTGGATGGCGGTGCCATGGGAGTCATCTTTCCCCAT ATTCATAACAAAGATGATGCCCTAAGCGCAGTGTCCATTTGCAAATATCCACCTACGGGGAAGAGGTCTATGACA GGCCAGCTGCCATATTTCCGGCTTCAGTCGACGCCGGTCGGTGTTTTCACCCAGGAGAATAACTCCAATGCATCG TCTGTTTTTGTGATGATTGAGACCCGGGAGAGCATCGATAATGTGGACGAGATTGCTTCCGTGGATGGGATAGAT GTGCTGCTGATCGGCTCGAACGATTTATCTACGGAACTTGGGGTCCCTGCACAGTTCAAGAGCGATGGATTTCAG TCGGCTGTGGAGGCCGTGAGTCGGGCCTGCAAGAAACATGGCAAGACATTCGGTCTTGCTGGTATCTACGAGAAT GAAGAGCTGCATGACTGGGCTTTGAATAAGCTCGGAGCCGGTTTCATTCTGGTACAGCAAGACTCTGGCATCTTG GCCCGAGCTGGGAAGGATTGTGCAAACGCTATTACATTGCTCACTGGTCGTTAG |
| Transcript | >Pro_DTO377G3_2|g4750.t1 ATGGGTTCCAGCTACACCAATAACCTGCTGCAGAAAACGGCGAAGGGCCAAATCTGCAAGGCATTCGGTATCCGG CTAGTCACCAACCCCCAAGTGGTCCAGTTGGCGGCGAACAGTGGATACGATGCGCTCTTTATCGACCTAGAACAC TCGACGCTATCTCTCAATGATGCAAGTCTGCTGTGTATGGCGGGCCTGGGTTCAGGTATCACACCCTTTGTCCGC GTCCCCTACCAGTGTGGCGACGGCTTCGTGCAGCGCGTCTTGGATGGCGGTGCCATGGGAGTCATCTTTCCCCAT ATTCATAACAAAGATGATGCCCTAAGCGCAGTGTCCATTTGCAAATATCCACCTACGGGGAAGAGGTCTATGACA GGCCAGCTGCCATATTTCCGGCTTCAGTCGACGCCGGTCGGTGTTTTCACCCAGGAGAATAACTCCAATGCATCG TCTGTTTTTGTGATGATTGAGACCCGGGAGAGCATCGATAATGTGGACGAGATTGCTTCCGTGGATGGGATAGAT GTGCTGCTGATCGGCTCGAACGATTTATCTACGGAACTTGGGGTCCCTGCACAGTTCAAGAGCGATGGATTTCAG TCGGCTGTGGAGGCCGTGAGTCGGGCCTGCAAGAAACATGGCAAGACATTCGGTCTTGCTGGTATCTACGAGAAT GAAGAGCTGCATGACTGGGCTTTGAATAAGCTCGGAGCCGGTTTCATTCTGGTACAGCAAGACTCTGGCATCTTG GCCCGAGCTGGGAAGGATTGTGCAAACGCTATTACATTGCTCACTGGTCGTTAG |
| Gene | >Pro_DTO377G3_2|g4750.t1 ATGGGTTCCAGCTACACCAATAACCTGCTGCAGAAAACGGCGAAGGGCCAAATCTGCAAGGCAAGTCTAATTTCC AGTGACCGCTGTGTGATAATTATCTGTCTGCTAACTGGTGATAATAGGCATTCGGTATCCGGCTAGTCACCAACC CCCAAGTGGTCCAGTTGGCGGCGAACAGTGGATACGATGCGCTCTTTATCGACCTAGAACACTCGACGCTATCTC TCAATGATGCAAGTCTGCTGTGTATGGCGGGCCTGGGTTCAGGTATCACACCCTTTGTCCGCGTCCCCTACCAGT GTGGCGACGGCTTCGTGCAGCGCGTCTTGGATGGCGGTGCCATGGGAGTCATCTTTCCCCATATTCATAACAAAG GTAAGAAACATACCCTGATTTTCTTTCTTTTACTAATTTTCGCTTCCACAGATGATGCCCTAAGCGCAGTGTCCA TTTGCAAATATCCACCTACGGGGAAGAGGTCTATGACAGGCCAGCTGCCATATTTCCGGCTTCAGTCGACGCCGG TCGGTGTTTTCACCCAGGAGAATAACTCCAATGCATCGTCTGTTTTTGTGATGATTGAGACCCGGGAGAGCATCG ATAATGTGGACGAGATTGCTTCCGTGGATGGGATAGATGTGCTGCTGATCGGCTCGAACGATTTATCTACGGAAC TTGGGGTCCCTGCACAGTTCAAGAGCGATGGATTTCAGTCGGCTGTGGAGGCCGTGAGTCGGGCCTGCAAGAAAC ATGGCAAGACATTCGGTCTTGCTGGTATCTACGAGAATGAAGAGCTGCATGACTGGGCTTTGAATAAGCTCGGAG CCGGTTTCATTCTGGTACAGCAAGACTCTGGCATCTTGGCCCGAGCTGGGAAGGATTGTGCAAACGCTATTACAT TGCTCACTGGTCGTTAG |