© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4732.t1 |
| Gene name | |
| Location | scaffold_10:244602..245775 |
| Strand | - |
| Gene length (bp) | 1173 |
| Transcript length (bp) | 1173 |
| Coding sequence length (bp) | 1173 |
| Protein length (aa) | 391 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02458 | Transferase | Transferase family | 4.6E-07 | 15 | 234 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 21 | 0.5 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 22.44 | 10.78 | 34.09 |
| 5d_25C | Five days - 25 degrees Celsius | 30.72 | 16.00 | 45.45 |
| 7d_25C | Seven days - 25 degrees Celsius | 40.78 | 20.48 | 61.07 |
| 10d_25C | Ten days - 25 degrees Celsius | 13.68 | 5.19 | 22.16 |
| 7d_15C | Seven days - 15 degrees Celsius | 61.73 | 29.32 | 94.15 |
| 7d_30C | Seven days - 30 degrees Celsius | 8.55 | 3.05 | 14.05 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.300393 | no |
| 3d_25C | 7d_25C | 0.024892 | yes |
| 3d_25C | 7d_15C | 0.000700 | yes |
| 3d_25C | 7d_30C | 0.001278 | yes |
| 3d_25C | 10d_25C | 0.130487 | no |
| 5d_25C | 7d_25C | 0.360277 | no |
| 5d_25C | 7d_15C | 0.009124 | yes |
| 5d_25C | 7d_30C | 0.000700 | yes |
| 5d_25C | 10d_25C | 0.008807 | yes |
| 7d_25C | 7d_15C | 0.159081 | no |
| 7d_25C | 7d_30C | 0.000700 | yes |
| 7d_25C | 10d_25C | 0.000700 | yes |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.212585 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4732.t1 MESALGGVQSGMSMLETSDSKQHLCPLPPLIPSTERQPVIRFQANIFTDAIVLAMTFSHIVFDGTGAAKILALLG RCCRDPSVTPLPLIIDEQDRAQSAIFAGLADTSPAQDHTAELGPAPAIHPVPLDAASLRTCRFEFNSERILQLKY QCSQVLKNACMFQPNSASIPVADLPPFLSSNDVLTSALADAIQRVKSQSKTYDCLDLCMAVNMRGRIELSAAREF LGNMACNLRLKTPGPEYTGPEQCLSCRKTHDCPIQTDQLRFLTDLACKVRNKVRNMDRKYFQSCMTYIANQKDWS QTGMIFTDLAFSSWRHLDIYGLDFGDSFGIVHNFDLSFGLIEGDVIFLPKRLTCDQKEAGWDVHITLPAKDLEAL VKDDLIRWLMGRDGE* |
| Coding | >Pro_DTO377G3_2|g4732.t1 ATGGAAAGCGCGTTAGGAGGCGTGCAGAGTGGCATGTCAATGCTTGAGACATCTGACTCCAAGCAGCATCTTTGT CCGCTCCCACCGCTTATTCCCTCGACTGAAAGACAGCCTGTGATTCGGTTCCAGGCAAATATTTTCACGGATGCA ATCGTGCTGGCGATGACGTTCAGCCATATTGTTTTTGACGGAACAGGCGCGGCAAAAATCCTTGCGTTACTGGGA AGATGCTGCCGAGACCCATCAGTTACCCCGCTGCCGCTCATCATTGACGAGCAAGATCGAGCTCAGAGCGCTATA TTTGCGGGACTGGCAGACACGTCTCCTGCCCAAGATCACACGGCAGAACTTGGTCCTGCGCCGGCAATACACCCC GTTCCCCTTGACGCAGCGTCGCTCAGAACATGTCGCTTTGAATTCAACAGTGAGCGAATTTTGCAGCTCAAATAC CAATGTTCTCAAGTCTTAAAGAACGCCTGCATGTTCCAGCCAAATAGTGCGTCTATTCCTGTCGCTGATCTTCCA CCCTTCTTGTCGAGCAATGATGTCTTGACTTCGGCTCTTGCGGACGCAATACAAAGGGTCAAATCTCAAAGCAAG ACATATGACTGCCTAGACTTATGCATGGCAGTCAACATGCGCGGTCGGATCGAGCTATCCGCAGCAAGAGAGTTT CTGGGAAACATGGCATGTAATCTTCGATTAAAAACTCCAGGCCCGGAGTATACCGGGCCAGAGCAGTGTTTGTCT TGCAGGAAAACCCACGATTGCCCAATTCAGACAGACCAACTCCGATTCCTGACTGATTTGGCGTGCAAAGTGAGG AACAAAGTACGAAACATGGATAGAAAATATTTCCAGAGCTGCATGACATACATCGCAAACCAGAAGGATTGGAGT CAAACCGGCATGATATTTACCGACCTTGCTTTTTCTAGTTGGCGACATCTTGATATTTATGGTCTGGATTTTGGT GACAGTTTTGGAATTGTCCACAATTTCGATCTTTCGTTCGGCCTGATTGAGGGTGATGTCATTTTTCTCCCGAAA CGACTCACTTGTGACCAAAAGGAAGCAGGTTGGGACGTTCATATCACGCTACCTGCGAAGGATCTTGAAGCACTT GTCAAAGATGATCTCATTCGCTGGTTGATGGGTCGGGATGGAGAATGA |
| Transcript | >Pro_DTO377G3_2|g4732.t1 ATGGAAAGCGCGTTAGGAGGCGTGCAGAGTGGCATGTCAATGCTTGAGACATCTGACTCCAAGCAGCATCTTTGT CCGCTCCCACCGCTTATTCCCTCGACTGAAAGACAGCCTGTGATTCGGTTCCAGGCAAATATTTTCACGGATGCA ATCGTGCTGGCGATGACGTTCAGCCATATTGTTTTTGACGGAACAGGCGCGGCAAAAATCCTTGCGTTACTGGGA AGATGCTGCCGAGACCCATCAGTTACCCCGCTGCCGCTCATCATTGACGAGCAAGATCGAGCTCAGAGCGCTATA TTTGCGGGACTGGCAGACACGTCTCCTGCCCAAGATCACACGGCAGAACTTGGTCCTGCGCCGGCAATACACCCC GTTCCCCTTGACGCAGCGTCGCTCAGAACATGTCGCTTTGAATTCAACAGTGAGCGAATTTTGCAGCTCAAATAC CAATGTTCTCAAGTCTTAAAGAACGCCTGCATGTTCCAGCCAAATAGTGCGTCTATTCCTGTCGCTGATCTTCCA CCCTTCTTGTCGAGCAATGATGTCTTGACTTCGGCTCTTGCGGACGCAATACAAAGGGTCAAATCTCAAAGCAAG ACATATGACTGCCTAGACTTATGCATGGCAGTCAACATGCGCGGTCGGATCGAGCTATCCGCAGCAAGAGAGTTT CTGGGAAACATGGCATGTAATCTTCGATTAAAAACTCCAGGCCCGGAGTATACCGGGCCAGAGCAGTGTTTGTCT TGCAGGAAAACCCACGATTGCCCAATTCAGACAGACCAACTCCGATTCCTGACTGATTTGGCGTGCAAAGTGAGG AACAAAGTACGAAACATGGATAGAAAATATTTCCAGAGCTGCATGACATACATCGCAAACCAGAAGGATTGGAGT CAAACCGGCATGATATTTACCGACCTTGCTTTTTCTAGTTGGCGACATCTTGATATTTATGGTCTGGATTTTGGT GACAGTTTTGGAATTGTCCACAATTTCGATCTTTCGTTCGGCCTGATTGAGGGTGATGTCATTTTTCTCCCGAAA CGACTCACTTGTGACCAAAAGGAAGCAGGTTGGGACGTTCATATCACGCTACCTGCGAAGGATCTTGAAGCACTT GTCAAAGATGATCTCATTCGCTGGTTGATGGGTCGGGATGGAGAATGA |
| Gene | >Pro_DTO377G3_2|g4732.t1 ATGGAAAGCGCGTTAGGAGGCGTGCAGAGTGGCATGTCAATGCTTGAGACATCTGACTCCAAGCAGCATCTTTGT CCGCTCCCACCGCTTATTCCCTCGACTGAAAGACAGCCTGTGATTCGGTTCCAGGCAAATATTTTCACGGATGCA ATCGTGCTGGCGATGACGTTCAGCCATATTGTTTTTGACGGAACAGGCGCGGCAAAAATCCTTGCGTTACTGGGA AGATGCTGCCGAGACCCATCAGTTACCCCGCTGCCGCTCATCATTGACGAGCAAGATCGAGCTCAGAGCGCTATA TTTGCGGGACTGGCAGACACGTCTCCTGCCCAAGATCACACGGCAGAACTTGGTCCTGCGCCGGCAATACACCCC GTTCCCCTTGACGCAGCGTCGCTCAGAACATGTCGCTTTGAATTCAACAGTGAGCGAATTTTGCAGCTCAAATAC CAATGTTCTCAAGTCTTAAAGAACGCCTGCATGTTCCAGCCAAATAGTGCGTCTATTCCTGTCGCTGATCTTCCA CCCTTCTTGTCGAGCAATGATGTCTTGACTTCGGCTCTTGCGGACGCAATACAAAGGGTCAAATCTCAAAGCAAG ACATATGACTGCCTAGACTTATGCATGGCAGTCAACATGCGCGGTCGGATCGAGCTATCCGCAGCAAGAGAGTTT CTGGGAAACATGGCATGTAATCTTCGATTAAAAACTCCAGGCCCGGAGTATACCGGGCCAGAGCAGTGTTTGTCT TGCAGGAAAACCCACGATTGCCCAATTCAGACAGACCAACTCCGATTCCTGACTGATTTGGCGTGCAAAGTGAGG AACAAAGTACGAAACATGGATAGAAAATATTTCCAGAGCTGCATGACATACATCGCAAACCAGAAGGATTGGAGT CAAACCGGCATGATATTTACCGACCTTGCTTTTTCTAGTTGGCGACATCTTGATATTTATGGTCTGGATTTTGGT GACAGTTTTGGAATTGTCCACAATTTCGATCTTTCGTTCGGCCTGATTGAGGGTGATGTCATTTTTCTCCCGAAA CGACTCACTTGTGACCAAAAGGAAGCAGGTTGGGACGTTCATATCACGCTACCTGCGAAGGATCTTGAAGCACTT GTCAAAGATGATCTCATTCGCTGGTTGATGGGTCGGGATGGAGAATGA |