Protein ID | Pro_DTO377G3_2|g4731.t1 |
Gene name | |
Location | scaffold_10:243420..244281 |
Strand | + |
Gene length (bp) | 861 |
Transcript length (bp) | 861 |
Coding sequence length (bp) | 861 |
Protein length (aa) | 287 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF05721 | PhyH | Phytanoyl-CoA dioxygenase (PhyH) | 1.3E-26 | 22 | 217 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 12 | 0.45 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
3d_25C | Three days - 25 degrees Celsius | 128.60 | 76.02 | 181.19 |
5d_25C | Five days - 25 degrees Celsius | 133.66 | 78.29 | 189.03 |
7d_25C | Seven days - 25 degrees Celsius | 167.53 | 85.56 | 249.50 |
10d_25C | Ten days - 25 degrees Celsius | 66.78 | 34.09 | 99.47 |
7d_15C | Seven days - 15 degrees Celsius | 197.08 | 72.97 | 321.19 |
7d_30C | Seven days - 30 degrees Celsius | 165.72 | 95.50 | 235.95 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
3d_25C | 5d_25C | 0.919109 | no |
3d_25C | 7d_25C | 0.343945 | no |
3d_25C | 7d_15C | 0.187321 | no |
3d_25C | 7d_30C | 0.333170 | no |
3d_25C | 10d_25C | 0.005626 | yes |
5d_25C | 7d_25C | 0.438271 | no |
5d_25C | 7d_15C | 0.233440 | no |
5d_25C | 7d_30C | 0.428061 | no |
5d_25C | 10d_25C | 0.005235 | yes |
7d_25C | 7d_15C | 0.693492 | no |
7d_25C | 7d_30C | 0.981003 | no |
7d_25C | 10d_25C | 0.000700 | yes |
7d_15C | 7d_30C | 0.645427 | no |
7d_15C | 10d_25C | 0.000700 | yes |
7d_30C | 10d_25C | 0.000700 | yes |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Pro_DTO377G3_2|g4731.t1 MRSPSLPRLPVSARPEAILDIYNDYGCVIIEGLLSSSEVASMNQEIDPGLAKLAPGKNGVPLEEFLGINTKRLPL APNSRTFREVILENDLMHALSESILCDSPGEGYHINCAQVIEIGPGNAAQPLHRDQSVWPFWDLIPSPAPEACIN FFCALTPFTEANGATRVAPKTHLDVDLNNLNPPQLLPVEINPGDGFLFSGRLVHGGGENRTNEYRRGITIHIARK GLMTEEAHPLSIPREIAETMSYRGQAMFGFRSNWPIKDGPVGTYWSSNFDEIGGHLGLKSS* |
Coding | >Pro_DTO377G3_2|g4731.t1 ATGAGATCACCAAGTCTCCCGCGACTGCCAGTCTCAGCAAGACCCGAGGCCATTCTCGATATTTACAACGATTAT GGATGTGTAATTATCGAGGGGCTTCTCAGTTCATCCGAGGTTGCCTCAATGAATCAAGAGATTGATCCTGGACTG GCAAAACTTGCTCCCGGTAAAAACGGGGTGCCGTTGGAAGAGTTCCTGGGCATAAACACAAAGCGATTGCCACTG GCTCCAAATAGCCGTACTTTCCGCGAGGTGATTCTGGAGAATGATCTGATGCACGCTCTGAGTGAATCGATATTA TGTGACAGTCCTGGGGAAGGGTATCATATCAACTGTGCACAGGTGATTGAGATCGGACCCGGTAACGCGGCACAA CCACTGCATCGAGATCAAAGTGTATGGCCTTTCTGGGACCTGATTCCATCTCCAGCACCGGAGGCTTGCATCAAC TTCTTTTGCGCCTTGACCCCATTTACGGAGGCCAATGGCGCCACAAGAGTGGCCCCGAAAACGCATCTTGATGTC GACCTAAACAACTTGAATCCGCCCCAACTTCTGCCAGTTGAGATCAACCCCGGCGATGGATTTCTCTTTTCCGGC AGACTTGTTCATGGTGGGGGAGAGAACAGGACCAATGAGTACCGTCGTGGTATCACAATCCACATTGCCCGCAAG GGCCTCATGACGGAGGAAGCACATCCACTATCAATCCCTCGCGAGATTGCAGAGACCATGTCTTACAGGGGCCAG GCGATGTTCGGCTTCCGAAGCAACTGGCCGATCAAGGATGGACCCGTTGGGACCTACTGGTCCAGTAACTTTGAC GAGATTGGTGGCCATTTAGGACTAAAGTCTAGCTAG |
Transcript | >Pro_DTO377G3_2|g4731.t1 ATGAGATCACCAAGTCTCCCGCGACTGCCAGTCTCAGCAAGACCCGAGGCCATTCTCGATATTTACAACGATTAT GGATGTGTAATTATCGAGGGGCTTCTCAGTTCATCCGAGGTTGCCTCAATGAATCAAGAGATTGATCCTGGACTG GCAAAACTTGCTCCCGGTAAAAACGGGGTGCCGTTGGAAGAGTTCCTGGGCATAAACACAAAGCGATTGCCACTG GCTCCAAATAGCCGTACTTTCCGCGAGGTGATTCTGGAGAATGATCTGATGCACGCTCTGAGTGAATCGATATTA TGTGACAGTCCTGGGGAAGGGTATCATATCAACTGTGCACAGGTGATTGAGATCGGACCCGGTAACGCGGCACAA CCACTGCATCGAGATCAAAGTGTATGGCCTTTCTGGGACCTGATTCCATCTCCAGCACCGGAGGCTTGCATCAAC TTCTTTTGCGCCTTGACCCCATTTACGGAGGCCAATGGCGCCACAAGAGTGGCCCCGAAAACGCATCTTGATGTC GACCTAAACAACTTGAATCCGCCCCAACTTCTGCCAGTTGAGATCAACCCCGGCGATGGATTTCTCTTTTCCGGC AGACTTGTTCATGGTGGGGGAGAGAACAGGACCAATGAGTACCGTCGTGGTATCACAATCCACATTGCCCGCAAG GGCCTCATGACGGAGGAAGCACATCCACTATCAATCCCTCGCGAGATTGCAGAGACCATGTCTTACAGGGGCCAG GCGATGTTCGGCTTCCGAAGCAACTGGCCGATCAAGGATGGACCCGTTGGGACCTACTGGTCCAGTAACTTTGAC GAGATTGGTGGCCATTTAGGACTAAAGTCTAGCTAG |
Gene | >Pro_DTO377G3_2|g4731.t1 ATGAGATCACCAAGTCTCCCGCGACTGCCAGTCTCAGCAAGACCCGAGGCCATTCTCGATATTTACAACGATTAT GGATGTGTAATTATCGAGGGGCTTCTCAGTTCATCCGAGGTTGCCTCAATGAATCAAGAGATTGATCCTGGACTG GCAAAACTTGCTCCCGGTAAAAACGGGGTGCCGTTGGAAGAGTTCCTGGGCATAAACACAAAGCGATTGCCACTG GCTCCAAATAGCCGTACTTTCCGCGAGGTGATTCTGGAGAATGATCTGATGCACGCTCTGAGTGAATCGATATTA TGTGACAGTCCTGGGGAAGGGTATCATATCAACTGTGCACAGGTGATTGAGATCGGACCCGGTAACGCGGCACAA CCACTGCATCGAGATCAAAGTGTATGGCCTTTCTGGGACCTGATTCCATCTCCAGCACCGGAGGCTTGCATCAAC TTCTTTTGCGCCTTGACCCCATTTACGGAGGCCAATGGCGCCACAAGAGTGGCCCCGAAAACGCATCTTGATGTC GACCTAAACAACTTGAATCCGCCCCAACTTCTGCCAGTTGAGATCAACCCCGGCGATGGATTTCTCTTTTCCGGC AGACTTGTTCATGGTGGGGGAGAGAACAGGACCAATGAGTACCGTCGTGGTATCACAATCCACATTGCCCGCAAG GGCCTCATGACGGAGGAAGCACATCCACTATCAATCCCTCGCGAGATTGCAGAGACCATGTCTTACAGGGGCCAG GCGATGTTCGGCTTCCGAAGCAACTGGCCGATCAAGGATGGACCCGTTGGGACCTACTGGTCCAGTAACTTTGAC GAGATTGGTGGCCATTTAGGACTAAAGTCTAGCTAG |