© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4731.t1 |
| Gene name | |
| Location | scaffold_10:243420..244281 |
| Strand | + |
| Gene length (bp) | 861 |
| Transcript length (bp) | 861 |
| Coding sequence length (bp) | 861 |
| Protein length (aa) | 287 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05721 | PhyH | Phytanoyl-CoA dioxygenase (PhyH) | 1.3E-26 | 22 | 217 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 128.60 | 76.02 | 181.19 |
| 5d_25C | Five days - 25 degrees Celsius | 133.66 | 78.29 | 189.03 |
| 7d_25C | Seven days - 25 degrees Celsius | 167.53 | 85.56 | 249.50 |
| 10d_25C | Ten days - 25 degrees Celsius | 66.78 | 34.09 | 99.47 |
| 7d_15C | Seven days - 15 degrees Celsius | 197.08 | 72.97 | 321.19 |
| 7d_30C | Seven days - 30 degrees Celsius | 165.72 | 95.50 | 235.95 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.919109 | no |
| 3d_25C | 7d_25C | 0.343945 | no |
| 3d_25C | 7d_15C | 0.187321 | no |
| 3d_25C | 7d_30C | 0.333170 | no |
| 3d_25C | 10d_25C | 0.005626 | yes |
| 5d_25C | 7d_25C | 0.438271 | no |
| 5d_25C | 7d_15C | 0.233440 | no |
| 5d_25C | 7d_30C | 0.428061 | no |
| 5d_25C | 10d_25C | 0.005235 | yes |
| 7d_25C | 7d_15C | 0.693492 | no |
| 7d_25C | 7d_30C | 0.981003 | no |
| 7d_25C | 10d_25C | 0.000700 | yes |
| 7d_15C | 7d_30C | 0.645427 | no |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4731.t1 MRSPSLPRLPVSARPEAILDIYNDYGCVIIEGLLSSSEVASMNQEIDPGLAKLAPGKNGVPLEEFLGINTKRLPL APNSRTFREVILENDLMHALSESILCDSPGEGYHINCAQVIEIGPGNAAQPLHRDQSVWPFWDLIPSPAPEACIN FFCALTPFTEANGATRVAPKTHLDVDLNNLNPPQLLPVEINPGDGFLFSGRLVHGGGENRTNEYRRGITIHIARK GLMTEEAHPLSIPREIAETMSYRGQAMFGFRSNWPIKDGPVGTYWSSNFDEIGGHLGLKSS* |
| Coding | >Pro_DTO377G3_2|g4731.t1 ATGAGATCACCAAGTCTCCCGCGACTGCCAGTCTCAGCAAGACCCGAGGCCATTCTCGATATTTACAACGATTAT GGATGTGTAATTATCGAGGGGCTTCTCAGTTCATCCGAGGTTGCCTCAATGAATCAAGAGATTGATCCTGGACTG GCAAAACTTGCTCCCGGTAAAAACGGGGTGCCGTTGGAAGAGTTCCTGGGCATAAACACAAAGCGATTGCCACTG GCTCCAAATAGCCGTACTTTCCGCGAGGTGATTCTGGAGAATGATCTGATGCACGCTCTGAGTGAATCGATATTA TGTGACAGTCCTGGGGAAGGGTATCATATCAACTGTGCACAGGTGATTGAGATCGGACCCGGTAACGCGGCACAA CCACTGCATCGAGATCAAAGTGTATGGCCTTTCTGGGACCTGATTCCATCTCCAGCACCGGAGGCTTGCATCAAC TTCTTTTGCGCCTTGACCCCATTTACGGAGGCCAATGGCGCCACAAGAGTGGCCCCGAAAACGCATCTTGATGTC GACCTAAACAACTTGAATCCGCCCCAACTTCTGCCAGTTGAGATCAACCCCGGCGATGGATTTCTCTTTTCCGGC AGACTTGTTCATGGTGGGGGAGAGAACAGGACCAATGAGTACCGTCGTGGTATCACAATCCACATTGCCCGCAAG GGCCTCATGACGGAGGAAGCACATCCACTATCAATCCCTCGCGAGATTGCAGAGACCATGTCTTACAGGGGCCAG GCGATGTTCGGCTTCCGAAGCAACTGGCCGATCAAGGATGGACCCGTTGGGACCTACTGGTCCAGTAACTTTGAC GAGATTGGTGGCCATTTAGGACTAAAGTCTAGCTAG |
| Transcript | >Pro_DTO377G3_2|g4731.t1 ATGAGATCACCAAGTCTCCCGCGACTGCCAGTCTCAGCAAGACCCGAGGCCATTCTCGATATTTACAACGATTAT GGATGTGTAATTATCGAGGGGCTTCTCAGTTCATCCGAGGTTGCCTCAATGAATCAAGAGATTGATCCTGGACTG GCAAAACTTGCTCCCGGTAAAAACGGGGTGCCGTTGGAAGAGTTCCTGGGCATAAACACAAAGCGATTGCCACTG GCTCCAAATAGCCGTACTTTCCGCGAGGTGATTCTGGAGAATGATCTGATGCACGCTCTGAGTGAATCGATATTA TGTGACAGTCCTGGGGAAGGGTATCATATCAACTGTGCACAGGTGATTGAGATCGGACCCGGTAACGCGGCACAA CCACTGCATCGAGATCAAAGTGTATGGCCTTTCTGGGACCTGATTCCATCTCCAGCACCGGAGGCTTGCATCAAC TTCTTTTGCGCCTTGACCCCATTTACGGAGGCCAATGGCGCCACAAGAGTGGCCCCGAAAACGCATCTTGATGTC GACCTAAACAACTTGAATCCGCCCCAACTTCTGCCAGTTGAGATCAACCCCGGCGATGGATTTCTCTTTTCCGGC AGACTTGTTCATGGTGGGGGAGAGAACAGGACCAATGAGTACCGTCGTGGTATCACAATCCACATTGCCCGCAAG GGCCTCATGACGGAGGAAGCACATCCACTATCAATCCCTCGCGAGATTGCAGAGACCATGTCTTACAGGGGCCAG GCGATGTTCGGCTTCCGAAGCAACTGGCCGATCAAGGATGGACCCGTTGGGACCTACTGGTCCAGTAACTTTGAC GAGATTGGTGGCCATTTAGGACTAAAGTCTAGCTAG |
| Gene | >Pro_DTO377G3_2|g4731.t1 ATGAGATCACCAAGTCTCCCGCGACTGCCAGTCTCAGCAAGACCCGAGGCCATTCTCGATATTTACAACGATTAT GGATGTGTAATTATCGAGGGGCTTCTCAGTTCATCCGAGGTTGCCTCAATGAATCAAGAGATTGATCCTGGACTG GCAAAACTTGCTCCCGGTAAAAACGGGGTGCCGTTGGAAGAGTTCCTGGGCATAAACACAAAGCGATTGCCACTG GCTCCAAATAGCCGTACTTTCCGCGAGGTGATTCTGGAGAATGATCTGATGCACGCTCTGAGTGAATCGATATTA TGTGACAGTCCTGGGGAAGGGTATCATATCAACTGTGCACAGGTGATTGAGATCGGACCCGGTAACGCGGCACAA CCACTGCATCGAGATCAAAGTGTATGGCCTTTCTGGGACCTGATTCCATCTCCAGCACCGGAGGCTTGCATCAAC TTCTTTTGCGCCTTGACCCCATTTACGGAGGCCAATGGCGCCACAAGAGTGGCCCCGAAAACGCATCTTGATGTC GACCTAAACAACTTGAATCCGCCCCAACTTCTGCCAGTTGAGATCAACCCCGGCGATGGATTTCTCTTTTCCGGC AGACTTGTTCATGGTGGGGGAGAGAACAGGACCAATGAGTACCGTCGTGGTATCACAATCCACATTGCCCGCAAG GGCCTCATGACGGAGGAAGCACATCCACTATCAATCCCTCGCGAGATTGCAGAGACCATGTCTTACAGGGGCCAG GCGATGTTCGGCTTCCGAAGCAACTGGCCGATCAAGGATGGACCCGTTGGGACCTACTGGTCCAGTAACTTTGAC GAGATTGGTGGCCATTTAGGACTAAAGTCTAGCTAG |