Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g4731.t1
Gene name
Locationscaffold_10:243420..244281
Strand+
Gene length (bp)861
Transcript length (bp)861
Coding sequence length (bp)861
Protein length (aa) 287

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF05721 PhyH Phytanoyl-CoA dioxygenase (PhyH) 1.3E-26 22 217

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 12 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 128.60 76.02 181.19
5d_25C Five days - 25 degrees Celsius 133.66 78.29 189.03
7d_25C Seven days - 25 degrees Celsius 167.53 85.56 249.50
10d_25C Ten days - 25 degrees Celsius 66.78 34.09 99.47
7d_15C Seven days - 15 degrees Celsius 197.08 72.97 321.19
7d_30C Seven days - 30 degrees Celsius 165.72 95.50 235.95

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.919109 no
3d_25C 7d_25C 0.343945 no
3d_25C 7d_15C 0.187321 no
3d_25C 7d_30C 0.333170 no
3d_25C 10d_25C 0.005626 yes
5d_25C 7d_25C 0.438271 no
5d_25C 7d_15C 0.233440 no
5d_25C 7d_30C 0.428061 no
5d_25C 10d_25C 0.005235 yes
7d_25C 7d_15C 0.693492 no
7d_25C 7d_30C 0.981003 no
7d_25C 10d_25C 0.000700 yes
7d_15C 7d_30C 0.645427 no
7d_15C 10d_25C 0.000700 yes
7d_30C 10d_25C 0.000700 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g4731.t1
MRSPSLPRLPVSARPEAILDIYNDYGCVIIEGLLSSSEVASMNQEIDPGLAKLAPGKNGVPLEEFLGINTKRLPL
APNSRTFREVILENDLMHALSESILCDSPGEGYHINCAQVIEIGPGNAAQPLHRDQSVWPFWDLIPSPAPEACIN
FFCALTPFTEANGATRVAPKTHLDVDLNNLNPPQLLPVEINPGDGFLFSGRLVHGGGENRTNEYRRGITIHIARK
GLMTEEAHPLSIPREIAETMSYRGQAMFGFRSNWPIKDGPVGTYWSSNFDEIGGHLGLKSS*
Coding >Pro_DTO377G3_2|g4731.t1
ATGAGATCACCAAGTCTCCCGCGACTGCCAGTCTCAGCAAGACCCGAGGCCATTCTCGATATTTACAACGATTAT
GGATGTGTAATTATCGAGGGGCTTCTCAGTTCATCCGAGGTTGCCTCAATGAATCAAGAGATTGATCCTGGACTG
GCAAAACTTGCTCCCGGTAAAAACGGGGTGCCGTTGGAAGAGTTCCTGGGCATAAACACAAAGCGATTGCCACTG
GCTCCAAATAGCCGTACTTTCCGCGAGGTGATTCTGGAGAATGATCTGATGCACGCTCTGAGTGAATCGATATTA
TGTGACAGTCCTGGGGAAGGGTATCATATCAACTGTGCACAGGTGATTGAGATCGGACCCGGTAACGCGGCACAA
CCACTGCATCGAGATCAAAGTGTATGGCCTTTCTGGGACCTGATTCCATCTCCAGCACCGGAGGCTTGCATCAAC
TTCTTTTGCGCCTTGACCCCATTTACGGAGGCCAATGGCGCCACAAGAGTGGCCCCGAAAACGCATCTTGATGTC
GACCTAAACAACTTGAATCCGCCCCAACTTCTGCCAGTTGAGATCAACCCCGGCGATGGATTTCTCTTTTCCGGC
AGACTTGTTCATGGTGGGGGAGAGAACAGGACCAATGAGTACCGTCGTGGTATCACAATCCACATTGCCCGCAAG
GGCCTCATGACGGAGGAAGCACATCCACTATCAATCCCTCGCGAGATTGCAGAGACCATGTCTTACAGGGGCCAG
GCGATGTTCGGCTTCCGAAGCAACTGGCCGATCAAGGATGGACCCGTTGGGACCTACTGGTCCAGTAACTTTGAC
GAGATTGGTGGCCATTTAGGACTAAAGTCTAGCTAG
Transcript >Pro_DTO377G3_2|g4731.t1
ATGAGATCACCAAGTCTCCCGCGACTGCCAGTCTCAGCAAGACCCGAGGCCATTCTCGATATTTACAACGATTAT
GGATGTGTAATTATCGAGGGGCTTCTCAGTTCATCCGAGGTTGCCTCAATGAATCAAGAGATTGATCCTGGACTG
GCAAAACTTGCTCCCGGTAAAAACGGGGTGCCGTTGGAAGAGTTCCTGGGCATAAACACAAAGCGATTGCCACTG
GCTCCAAATAGCCGTACTTTCCGCGAGGTGATTCTGGAGAATGATCTGATGCACGCTCTGAGTGAATCGATATTA
TGTGACAGTCCTGGGGAAGGGTATCATATCAACTGTGCACAGGTGATTGAGATCGGACCCGGTAACGCGGCACAA
CCACTGCATCGAGATCAAAGTGTATGGCCTTTCTGGGACCTGATTCCATCTCCAGCACCGGAGGCTTGCATCAAC
TTCTTTTGCGCCTTGACCCCATTTACGGAGGCCAATGGCGCCACAAGAGTGGCCCCGAAAACGCATCTTGATGTC
GACCTAAACAACTTGAATCCGCCCCAACTTCTGCCAGTTGAGATCAACCCCGGCGATGGATTTCTCTTTTCCGGC
AGACTTGTTCATGGTGGGGGAGAGAACAGGACCAATGAGTACCGTCGTGGTATCACAATCCACATTGCCCGCAAG
GGCCTCATGACGGAGGAAGCACATCCACTATCAATCCCTCGCGAGATTGCAGAGACCATGTCTTACAGGGGCCAG
GCGATGTTCGGCTTCCGAAGCAACTGGCCGATCAAGGATGGACCCGTTGGGACCTACTGGTCCAGTAACTTTGAC
GAGATTGGTGGCCATTTAGGACTAAAGTCTAGCTAG
Gene >Pro_DTO377G3_2|g4731.t1
ATGAGATCACCAAGTCTCCCGCGACTGCCAGTCTCAGCAAGACCCGAGGCCATTCTCGATATTTACAACGATTAT
GGATGTGTAATTATCGAGGGGCTTCTCAGTTCATCCGAGGTTGCCTCAATGAATCAAGAGATTGATCCTGGACTG
GCAAAACTTGCTCCCGGTAAAAACGGGGTGCCGTTGGAAGAGTTCCTGGGCATAAACACAAAGCGATTGCCACTG
GCTCCAAATAGCCGTACTTTCCGCGAGGTGATTCTGGAGAATGATCTGATGCACGCTCTGAGTGAATCGATATTA
TGTGACAGTCCTGGGGAAGGGTATCATATCAACTGTGCACAGGTGATTGAGATCGGACCCGGTAACGCGGCACAA
CCACTGCATCGAGATCAAAGTGTATGGCCTTTCTGGGACCTGATTCCATCTCCAGCACCGGAGGCTTGCATCAAC
TTCTTTTGCGCCTTGACCCCATTTACGGAGGCCAATGGCGCCACAAGAGTGGCCCCGAAAACGCATCTTGATGTC
GACCTAAACAACTTGAATCCGCCCCAACTTCTGCCAGTTGAGATCAACCCCGGCGATGGATTTCTCTTTTCCGGC
AGACTTGTTCATGGTGGGGGAGAGAACAGGACCAATGAGTACCGTCGTGGTATCACAATCCACATTGCCCGCAAG
GGCCTCATGACGGAGGAAGCACATCCACTATCAATCCCTCGCGAGATTGCAGAGACCATGTCTTACAGGGGCCAG
GCGATGTTCGGCTTCCGAAGCAACTGGCCGATCAAGGATGGACCCGTTGGGACCTACTGGTCCAGTAACTTTGAC
GAGATTGGTGGCCATTTAGGACTAAAGTCTAGCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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