© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4727.t1 |
| Gene name | |
| Location | scaffold_10:233227..234964 |
| Strand | + |
| Gene length (bp) | 1737 |
| Transcript length (bp) | 1626 |
| Coding sequence length (bp) | 1626 |
| Protein length (aa) | 542 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01565 | FAD_binding_4 | FAD binding domain | 2.7E-23 | 107 | 242 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0050660 | flavin adenine dinucleotide binding | Yes |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0043168 | anion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0036094 | small molecule binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 20 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 3.21 | 0.87 | 5.55 |
| 5d_25C | Five days - 25 degrees Celsius | 1.37 | 0.17 | 2.57 |
| 7d_25C | Seven days - 25 degrees Celsius | 1.91 | 0.14 | 3.68 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.75 | 0.00 | 1.54 |
| 7d_15C | Seven days - 15 degrees Celsius | 1.13 | 0.00 | 2.43 |
| 7d_30C | Seven days - 30 degrees Celsius | 2.31 | 0.41 | 4.22 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.055667 | no |
| 3d_25C | 7d_25C | 0.295000 | no |
| 3d_25C | 7d_15C | 0.090497 | no |
| 3d_25C | 7d_30C | 0.535352 | no |
| 3d_25C | 10d_25C | 0.007091 | yes |
| 5d_25C | 7d_25C | 0.588085 | no |
| 5d_25C | 7d_15C | 0.810022 | no |
| 5d_25C | 7d_30C | 0.323588 | no |
| 5d_25C | 10d_25C | 0.316866 | no |
| 7d_25C | 7d_15C | 0.447549 | no |
| 7d_25C | 7d_30C | 0.774000 | no |
| 7d_25C | 10d_25C | 0.097861 | no |
| 7d_15C | 7d_30C | 0.262088 | no |
| 7d_15C | 10d_25C | 0.616418 | no |
| 7d_30C | 10d_25C | 0.037351 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4727.t1 MHISTFIGGLSAICGLTLAQTTVTSPVIEADDFSVTGALEDLGVDVSQIPALESFTAIETRSTDKACAAACASLG FLFGSKVAAQDTTGYSNFTSSFWSVQQEEVQPRCIFRPTKNTEVSTAVLLSRLTGCEFAARSGGHAAFTGASSAP GGISIWFKDMNAVTLNADKTVASIEPGNNWLTTYTALEPYGLAVIGGRAASIGVGGFVLGGGISYHSNLYGWACD NVHSFEVVTASGLIVTASETSHADLYWALRGGGNNFGLVTKYNMYTIPSPKLYGGARTFLQTEFPEVINAWINVI NNATIDGKAQQYVAFLRTQDMNLASAELTYVHNDPNPEIYKQYRSIPAISDTSSAKTLVEYVEYLESENPFGLRE VYWPISAALDEKFANWVVDLFYSMISEVADVAGAQPVLIYQGITEAMLNNMKNHGGNALGLAGSSGPVHLLHISC WWTNEADDETIYAFVNKFMEKVIAEAKSVGVFNEYVYMNYASMFQDAVAGYGATNKAQLKNIAKKYDPREVYQKL QPGYFKLDGPPVTPSF* |
| Coding | >Pro_DTO377G3_2|g4727.t1 ATGCATATTTCGACCTTTATTGGCGGGCTATCCGCGATTTGCGGATTGACCCTAGCCCAGACAACTGTGACCAGC CCGGTCATCGAAGCGGATGATTTCAGCGTCACTGGCGCATTGGAGGATCTCGGTGTGGATGTGTCGCAAATTCCT GCATTGGAGTCATTCACCGCCATTGAGACACGGTCAACCGATAAGGCCTGTGCAGCTGCTTGCGCAAGTTTGGGA TTCCTTTTTGGCTCCAAGGTTGCTGCTCAAGATACTACTGGGTACAGCAACTTCACTAGCTCGTTCTGGTCAGTG CAGCAAGAAGAGGTCCAGCCTCGTTGTATTTTCCGTCCTACCAAGAATACGGAGGTCAGCACTGCAGTTTTACTT TCCCGGTTGACAGGCTGTGAGTTTGCTGCTCGCAGTGGCGGCCATGCGGCCTTTACCGGGGCTTCCAGCGCGCCT GGCGGAATCAGCATCTGGTTCAAGGATATGAATGCCGTTACCCTGAACGCAGACAAGACAGTCGCCTCAATTGAG CCTGGAAATAACTGGCTCACTACCTACACTGCCCTCGAGCCTTATGGATTGGCCGTTATTGGAGGTCGTGCCGCC AGCATTGGTGTTGGTGGCTTTGTTTTGGGTGGTGGAATCTCCTATCACTCCAACCTGTACGGATGGGCTTGCGAT AATGTCCACAGCTTTGAGGTCGTGACCGCTAGTGGTCTGATTGTAACCGCGAGTGAAACTTCCCACGCTGACCTA TATTGGGCTCTGCGCGGCGGTGGAAACAACTTTGGCCTTGTCACCAAGTACAATATGTACACCATCCCCTCGCCA AAGCTTTACGGTGGTGCCAGAACTTTCCTCCAGACCGAGTTTCCCGAGGTTATCAATGCTTGGATCAACGTGATC AACAATGCCACCATTGACGGCAAAGCCCAGCAATACGTCGCCTTCCTCCGGACCCAAGATATGAACCTTGCCTCT GCTGAGTTGACCTACGTGCACAACGACCCCAACCCCGAAATCTACAAGCAATACAGAAGCATTCCCGCCATTTCC GACACATCTAGTGCCAAGACCCTTGTCGAGTACGTCGAGTACCTTGAGAGCGAGAACCCATTCGGTCTTCGCGAG GTGTACTGGCCTATCAGTGCGGCTCTCGACGAGAAATTTGCCAACTGGGTGGTGGATCTCTTCTACTCGATGATC TCTGAGGTGGCCGATGTCGCCGGCGCCCAGCCCGTGCTCATCTACCAGGGAATCACCGAGGCCATGTTGAACAAT ATGAAGAACCACGGCGGTAACGCTCTTGGACTCGCCGGCTCATCTGGCCCTGTTCACCTTTTGCACATTTCTTGC TGGTGGACGAACGAGGCTGATGACGAGACTATCTACGCGTTTGTCAACAAATTCATGGAGAAGGTCATTGCTGAG GCTAAGAGCGTCGGAGTCTTCAATGAATATGTTTACATGAACTACGCCAGCATGTTCCAGGATGCTGTCGCTGGA TATGGTGCTACTAACAAGGCTCAGCTGAAGAATATTGCCAAGAAGTACGACCCCAGGGAGGTTTACCAAAAGCTC CAGCCTGGTTACTTCAAGCTTGATGGTCCTCCTGTGACTCCATCTTTCTAG |
| Transcript | >Pro_DTO377G3_2|g4727.t1 ATGCATATTTCGACCTTTATTGGCGGGCTATCCGCGATTTGCGGATTGACCCTAGCCCAGACAACTGTGACCAGC CCGGTCATCGAAGCGGATGATTTCAGCGTCACTGGCGCATTGGAGGATCTCGGTGTGGATGTGTCGCAAATTCCT GCATTGGAGTCATTCACCGCCATTGAGACACGGTCAACCGATAAGGCCTGTGCAGCTGCTTGCGCAAGTTTGGGA TTCCTTTTTGGCTCCAAGGTTGCTGCTCAAGATACTACTGGGTACAGCAACTTCACTAGCTCGTTCTGGTCAGTG CAGCAAGAAGAGGTCCAGCCTCGTTGTATTTTCCGTCCTACCAAGAATACGGAGGTCAGCACTGCAGTTTTACTT TCCCGGTTGACAGGCTGTGAGTTTGCTGCTCGCAGTGGCGGCCATGCGGCCTTTACCGGGGCTTCCAGCGCGCCT GGCGGAATCAGCATCTGGTTCAAGGATATGAATGCCGTTACCCTGAACGCAGACAAGACAGTCGCCTCAATTGAG CCTGGAAATAACTGGCTCACTACCTACACTGCCCTCGAGCCTTATGGATTGGCCGTTATTGGAGGTCGTGCCGCC AGCATTGGTGTTGGTGGCTTTGTTTTGGGTGGTGGAATCTCCTATCACTCCAACCTGTACGGATGGGCTTGCGAT AATGTCCACAGCTTTGAGGTCGTGACCGCTAGTGGTCTGATTGTAACCGCGAGTGAAACTTCCCACGCTGACCTA TATTGGGCTCTGCGCGGCGGTGGAAACAACTTTGGCCTTGTCACCAAGTACAATATGTACACCATCCCCTCGCCA AAGCTTTACGGTGGTGCCAGAACTTTCCTCCAGACCGAGTTTCCCGAGGTTATCAATGCTTGGATCAACGTGATC AACAATGCCACCATTGACGGCAAAGCCCAGCAATACGTCGCCTTCCTCCGGACCCAAGATATGAACCTTGCCTCT GCTGAGTTGACCTACGTGCACAACGACCCCAACCCCGAAATCTACAAGCAATACAGAAGCATTCCCGCCATTTCC GACACATCTAGTGCCAAGACCCTTGTCGAGTACGTCGAGTACCTTGAGAGCGAGAACCCATTCGGTCTTCGCGAG GTGTACTGGCCTATCAGTGCGGCTCTCGACGAGAAATTTGCCAACTGGGTGGTGGATCTCTTCTACTCGATGATC TCTGAGGTGGCCGATGTCGCCGGCGCCCAGCCCGTGCTCATCTACCAGGGAATCACCGAGGCCATGTTGAACAAT ATGAAGAACCACGGCGGTAACGCTCTTGGACTCGCCGGCTCATCTGGCCCTGTTCACCTTTTGCACATTTCTTGC TGGTGGACGAACGAGGCTGATGACGAGACTATCTACGCGTTTGTCAACAAATTCATGGAGAAGGTCATTGCTGAG GCTAAGAGCGTCGGAGTCTTCAATGAATATGTTTACATGAACTACGCCAGCATGTTCCAGGATGCTGTCGCTGGA TATGGTGCTACTAACAAGGCTCAGCTGAAGAATATTGCCAAGAAGTACGACCCCAGGGAGGTTTACCAAAAGCTC CAGCCTGGTTACTTCAAGCTTGATGGTCCTCCTGTGACTCCATCTTTCTAG |
| Gene | >Pro_DTO377G3_2|g4727.t1 ATGCATATTTCGACCTTTATTGGCGGGCTATCCGCGATTTGCGGATTGACCCTAGCCCAGACAACTGTGACCAGC CCGGTCATCGAAGCGGATGATTTCAGCGTCACTGGCGCATTGGAGGATCTCGGTGTGGATGTGTCGCAAATTCCT GCATTGGAGTCATTCACCGCCATTGAGACACGGTCAACCGATAAGGCCTGTGCAGCTGCTGTAAGTAAGCTCGCA AGCCATCGAGCAATAATTTATTCTAAATCTCTCTTAGTGCGCAAGTTTGGGATTCCTTTTTGGCTCCAAGGTTGC TGCTCAAGATACTACTGGGTACAGCAACTTCACTAGCTCGTTCTGGTCAGTGCAGCAAGAAGAGGTCCAGCCTCG TTGTATTTTCCGTCCTACCAAGAATACGGAGGTCAGCACTGCAGTTTTACTTTCCCGGTTGACAGGCTGTGAGTT TGCTGCTCGCAGTGGCGGCCATGCGGCCTTTACCGGGGCTTCCAGCGCGCCTGGCGGAATCAGCATCTGGTTCAA GGATATGAATGCCGTTACCCTGAACGCAGACAAGACAGTCGCCTCAATTGAGCCTGGAAATAACTGGCTCACTAC CTACACTGCCCTCGAGCCTTATGGATTGGCCGTTATTGGAGGTCGTGCCGCCAGCATTGGTGTTGGTGGCTTTGT TTTGGGTGGTGGAATCTCCTATCACTCCAACCTGTACGGATGGGCTTGCGATAATGTCCACAGCTTTGAGGTAAG AATATACATCTGTCATACCTTTTGCCGAATGAATTACTAACAAATCCTGTTTAGGTCGTGACCGCTAGTGGTCTG ATTGTAACCGCGAGTGAAACTTCCCACGCTGACCTATATTGGGCTCTGCGCGGCGGTGGAAACAACTTTGGCCTT GTCACCAAGTACAATATGTACACCATCCCCTCGCCAAAGCTTTACGGTGGTGCCAGAACTTTCCTCCAGACCGAG TTTCCCGAGGTTATCAATGCTTGGATCAACGTGATCAACAATGCCACCATTGACGGCAAAGCCCAGCAATACGTC GCCTTCCTCCGGACCCAAGATATGAACCTTGCCTCTGCTGAGTTGACCTACGTGCACAACGACCCCAACCCCGAA ATCTACAAGCAATACAGAAGCATTCCCGCCATTTCCGACACATCTAGTGCCAAGACCCTTGTCGAGTACGTCGAG TACCTTGAGAGCGAGAACCCATTCGGTCTTCGCGAGGTGTACTGGCCTATCAGTGCGGCTCTCGACGAGAAATTT GCCAACTGGGTGGTGGATCTCTTCTACTCGATGATCTCTGAGGTGGCCGATGTCGCCGGCGCCCAGCCCGTGCTC ATCTACCAGGGAATCACCGAGGCCATGTTGAACAATATGAAGAACCACGGCGGTAACGCTCTTGGACTCGCCGGC TCATCTGGCCCTGTTCACCTTTTGCACATTTCTTGCTGGTGGACGAACGAGGCTGATGACGAGACTATCTACGCG TTTGTCAACAAATTCATGGAGAAGGTCATTGCTGAGGCTAAGAGCGTCGGAGTCTTCAATGAATATGTTTACATG AACTACGCCAGCATGTTCCAGGATGCTGTCGCTGGATATGGTGCTACTAACAAGGCTCAGCTGAAGAATATTGCC AAGAAGTACGACCCCAGGGAGGTTTACCAAAAGCTCCAGCCTGGTTACTTCAAGCTTGATGGTCCTCCTGTGACT CCATCTTTCTAG |