© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4703.t1 |
| Gene name | |
| Location | scaffold_10:183142..183966 |
| Strand | - |
| Gene length (bp) | 824 |
| Transcript length (bp) | 576 |
| Coding sequence length (bp) | 576 |
| Protein length (aa) | 192 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 7.5E-15 | 73 | 142 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 37 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 196.56 | 119.21 | 273.91 |
| 5d_25C | Five days - 25 degrees Celsius | 185.45 | 111.88 | 259.02 |
| 7d_25C | Seven days - 25 degrees Celsius | 176.30 | 105.83 | 246.76 |
| 10d_25C | Ten days - 25 degrees Celsius | 167.00 | 99.64 | 234.35 |
| 7d_15C | Seven days - 15 degrees Celsius | 210.99 | 128.14 | 293.84 |
| 7d_30C | Seven days - 30 degrees Celsius | 155.86 | 92.07 | 219.64 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.859240 | no |
| 3d_25C | 7d_25C | 0.705340 | no |
| 3d_25C | 7d_15C | 0.818573 | no |
| 3d_25C | 7d_30C | 0.344277 | no |
| 3d_25C | 10d_25C | 0.536971 | no |
| 5d_25C | 7d_25C | 0.879436 | no |
| 5d_25C | 7d_15C | 0.649060 | no |
| 5d_25C | 7d_30C | 0.519726 | no |
| 5d_25C | 10d_25C | 0.727087 | no |
| 7d_25C | 7d_15C | 0.485946 | no |
| 7d_25C | 7d_30C | 0.672877 | no |
| 7d_25C | 10d_25C | 0.868419 | no |
| 7d_15C | 7d_30C | 0.186413 | no |
| 7d_15C | 10d_25C | 0.330265 | no |
| 7d_30C | 10d_25C | 0.830538 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4703.t1 MAAEGQEIPVEVKAEQIPHQEDGADDEEEIEAMKRRVAEMESEAAKLREMQADLDQQTESLQENKEDIDARSIFV GNVDYGASPEEIQAHFQSCGSINRVTILLDKFSGQPKGYAYVEFAEPSLVAQALVLNESVFRGRNLKVVPKRTNL PGMHRGRGRGFGRGRGRGFPRGGGYRGGAPYRGRGRGFSPY* |
| Coding | >Pro_DTO377G3_2|g4703.t1 ATGGCTGCTGAAGGTCAGGAGATTCCAGTGGAGGTCAAGGCGGAGCAGATTCCACACCAGGAAGATGGTGCAGAT GACGAGGAAGAGATTGAGGCCATGAAGCGACGAGTGGCCGAGATGGAATCCGAGGCCGCCAAGCTGCGGGAGATG CAAGCCGACCTCGACCAGCAAACCGAGAGCCTCCAAGAGAACAAGGAAGATATTGATGCGCGTAGCATTTTCGTC GGCAATGTCGACTACGGTGCTTCGCCAGAGGAAATTCAGGCTCATTTCCAGAGCTGTGGTTCCATCAACCGGGTT ACCATTTTGCTGGACAAGTTTTCTGGCCAGCCCAAAGGTTATGCCTATGTTGAATTTGCGGAACCTAGCCTAGTC GCTCAGGCTCTGGTGTTGAACGAGAGTGTCTTTCGCGGTCGCAACTTGAAGGTCGTGCCTAAGCGTACCAACCTG CCTGGGATGCACCGTGGCCGTGGTCGTGGCTTCGGCCGCGGTCGTGGCCGTGGCTTCCCTCGTGGTGGTGGATAT CGCGGTGGTGCTCCCTACCGGGGCCGAGGCCGTGGTTTCTCGCCCTACTAA |
| Transcript | >Pro_DTO377G3_2|g4703.t1 ATGGCTGCTGAAGGTCAGGAGATTCCAGTGGAGGTCAAGGCGGAGCAGATTCCACACCAGGAAGATGGTGCAGAT GACGAGGAAGAGATTGAGGCCATGAAGCGACGAGTGGCCGAGATGGAATCCGAGGCCGCCAAGCTGCGGGAGATG CAAGCCGACCTCGACCAGCAAACCGAGAGCCTCCAAGAGAACAAGGAAGATATTGATGCGCGTAGCATTTTCGTC GGCAATGTCGACTACGGTGCTTCGCCAGAGGAAATTCAGGCTCATTTCCAGAGCTGTGGTTCCATCAACCGGGTT ACCATTTTGCTGGACAAGTTTTCTGGCCAGCCCAAAGGTTATGCCTATGTTGAATTTGCGGAACCTAGCCTAGTC GCTCAGGCTCTGGTGTTGAACGAGAGTGTCTTTCGCGGTCGCAACTTGAAGGTCGTGCCTAAGCGTACCAACCTG CCTGGGATGCACCGTGGCCGTGGTCGTGGCTTCGGCCGCGGTCGTGGCCGTGGCTTCCCTCGTGGTGGTGGATAT CGCGGTGGTGCTCCCTACCGGGGCCGAGGCCGTGGTTTCTCGCCCTACTAA |
| Gene | >Pro_DTO377G3_2|g4703.t1 ATGGCTGCTGAAGGTCAGGAGATTCCAGTGGAGGTCAAGGCGGAGCAGATTCCACACCAGGAAGATGGTGCAGAT GACGAGGTAGGGTTGTTCCGCTGCATTGAAAGCAATTCCACTCTTTGTTCGAGATTTTTGGGTCATTTCTTTCAT ACCAACGTCGCATACTTTTTCTCATATACAAGGCATACCCCGCTGACATGATTGATCCCTACAGGAAGAGATTGA GGCCATGAAGCGACGAGTGGCCGAGATGGAATCCGAGGCCGCCAAGCTGCGGGAGATGCAAGCCGACCTCGACCA GCAAACCGAGAGCCTCCAAGAGAACAAGGAAGATATTGATGCGCGTAGCATTTTCGTCGGCAATGTCGACTACGG TGCTTCGCCAGAGGAAATTCAGGCTCATTTCCAGAGCTGTGGTTCCATCAACCGGGTTACCATTTTGCTGGACAA GTTTTCTGGCCAGCCCAAAGGGTGAGATCTGAACAGATGGACTGGAATATATATGGATATGAGCTGACAAGGCGC TGCAGTTATGCCTATGTTGAATTTGCGGAACCTAGCCTAGTCGCTCAGGCTCTGGTGTTGAACGAGAGTGTCTTT CGCGGTCGCAACTTGAAGGTCGGTTTATAAATGTTGGTCCTATTCTCTTTACACTCACTTATGTCGATTAACAGG TCGTGCCTAAGCGTACCAACCTGCCTGGGATGCACCGTGGCCGTGGTCGTGGCTTCGGCCGCGGTCGTGGCCGTG GCTTCCCTCGTGGTGGTGGATATCGCGGTGGTGCTCCCTACCGGGGCCGAGGCCGTGGTTTCTCGCCCTACTAA |