Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g4703.t1
Gene name
Locationscaffold_10:183142..183966
Strand-
Gene length (bp)824
Transcript length (bp)576
Coding sequence length (bp)576
Protein length (aa) 192

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.2E-15 73 142

GO

GO Term Description Terminal node
GO:0003676 nucleic acid binding Yes
GO:0097159 organic cyclic compound binding No
GO:1901363 heterocyclic compound binding No
GO:0005488 binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 37 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g4703.t1
MAAEGQEIPVEVKAEQIPHQEDGADDEEEIEAMKRRVAEMESEAAKLREMQADLDQQTESLQENKEDIDARSIFV
GNVDYGASPEEIQAHFQSCGSINRVTILLDKFSGQPKGYAYVEFAEPSLVAQALVLNESVFRGRNLKVVPKRTNL
PGMHRGRGRGFGRGRGRGFPRGGGYRGGAPYRGRGRGFSPY*
Coding >Pro_DTO377G3_2|g4703.t1
ATGGCTGCTGAAGGTCAGGAGATTCCAGTGGAGGTCAAGGCGGAGCAGATTCCACACCAGGAAGATGGTGCAGAT
GACGAGGAAGAGATTGAGGCCATGAAGCGACGAGTGGCCGAGATGGAATCCGAGGCCGCCAAGCTGCGGGAGATG
CAAGCCGACCTCGACCAGCAAACCGAGAGCCTCCAAGAGAACAAGGAAGATATTGATGCGCGTAGCATTTTCGTC
GGCAATGTCGACTACGGTGCTTCGCCAGAGGAAATTCAGGCTCATTTCCAGAGCTGTGGTTCCATCAACCGGGTT
ACCATTTTGCTGGACAAGTTTTCTGGCCAGCCCAAAGGTTATGCCTATGTTGAATTTGCGGAACCTAGCCTAGTC
GCTCAGGCTCTGGTGTTGAACGAGAGTGTCTTTCGCGGTCGCAACTTGAAGGTCGTGCCTAAGCGTACCAACCTG
CCTGGGATGCACCGTGGCCGTGGTCGTGGCTTCGGCCGCGGTCGTGGCCGTGGCTTCCCTCGTGGTGGTGGATAT
CGCGGTGGTGCTCCCTACCGGGGCCGAGGCCGTGGTTTCTCGCCCTACTAA
Transcript >Pro_DTO377G3_2|g4703.t1
ATGGCTGCTGAAGGTCAGGAGATTCCAGTGGAGGTCAAGGCGGAGCAGATTCCACACCAGGAAGATGGTGCAGAT
GACGAGGAAGAGATTGAGGCCATGAAGCGACGAGTGGCCGAGATGGAATCCGAGGCCGCCAAGCTGCGGGAGATG
CAAGCCGACCTCGACCAGCAAACCGAGAGCCTCCAAGAGAACAAGGAAGATATTGATGCGCGTAGCATTTTCGTC
GGCAATGTCGACTACGGTGCTTCGCCAGAGGAAATTCAGGCTCATTTCCAGAGCTGTGGTTCCATCAACCGGGTT
ACCATTTTGCTGGACAAGTTTTCTGGCCAGCCCAAAGGTTATGCCTATGTTGAATTTGCGGAACCTAGCCTAGTC
GCTCAGGCTCTGGTGTTGAACGAGAGTGTCTTTCGCGGTCGCAACTTGAAGGTCGTGCCTAAGCGTACCAACCTG
CCTGGGATGCACCGTGGCCGTGGTCGTGGCTTCGGCCGCGGTCGTGGCCGTGGCTTCCCTCGTGGTGGTGGATAT
CGCGGTGGTGCTCCCTACCGGGGCCGAGGCCGTGGTTTCTCGCCCTACTAA
Gene >Pro_DTO377G3_2|g4703.t1
ATGGCTGCTGAAGGTCAGGAGATTCCAGTGGAGGTCAAGGCGGAGCAGATTCCACACCAGGAAGATGGTGCAGAT
GACGAGGTAGGGTTGTTCCGCTGCATTGAAAGCAATTCCACTCTTTGTTCGAGATTTTTGGGTCATTTCTTTCAT
ACCAACGTCGCATACTTTTTCTCATATACAAGGCATACCCCGCTGACATGATTGATCCCTACAGGAAGAGATTGA
GGCCATGAAGCGACGAGTGGCCGAGATGGAATCCGAGGCCGCCAAGCTGCGGGAGATGCAAGCCGACCTCGACCA
GCAAACCGAGAGCCTCCAAGAGAACAAGGAAGATATTGATGCGCGTAGCATTTTCGTCGGCAATGTCGACTACGG
TGCTTCGCCAGAGGAAATTCAGGCTCATTTCCAGAGCTGTGGTTCCATCAACCGGGTTACCATTTTGCTGGACAA
GTTTTCTGGCCAGCCCAAAGGGTGAGATCTGAACAGATGGACTGGAATATATATGGATATGAGCTGACAAGGCGC
TGCAGTTATGCCTATGTTGAATTTGCGGAACCTAGCCTAGTCGCTCAGGCTCTGGTGTTGAACGAGAGTGTCTTT
CGCGGTCGCAACTTGAAGGTCGGTTTATAAATGTTGGTCCTATTCTCTTTACACTCACTTATGTCGATTAACAGG
TCGTGCCTAAGCGTACCAACCTGCCTGGGATGCACCGTGGCCGTGGTCGTGGCTTCGGCCGCGGTCGTGGCCGTG
GCTTCCCTCGTGGTGGTGGATATCGCGGTGGTGCTCCCTACCGGGGCCGAGGCCGTGGTTTCTCGCCCTACTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail