© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4694.t1 |
| Gene name | |
| Location | scaffold_10:159137..160581 |
| Strand | + |
| Gene length (bp) | 1444 |
| Transcript length (bp) | 1200 |
| Coding sequence length (bp) | 1200 |
| Protein length (aa) | 400 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00149 | Metallophos | Calcineurin-like phosphoesterase | 5.0E-13 | 28 | 283 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016787 | hydrolase activity | Yes |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 229.20 | 138.78 | 319.62 |
| 5d_25C | Five days - 25 degrees Celsius | 219.17 | 131.98 | 306.35 |
| 7d_25C | Seven days - 25 degrees Celsius | 209.05 | 125.01 | 293.09 |
| 10d_25C | Ten days - 25 degrees Celsius | 245.85 | 148.31 | 343.40 |
| 7d_15C | Seven days - 15 degrees Celsius | 213.63 | 124.80 | 302.46 |
| 7d_30C | Seven days - 30 degrees Celsius | 209.90 | 123.31 | 296.49 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.895095 | no |
| 3d_25C | 7d_25C | 0.762283 | no |
| 3d_25C | 7d_15C | 0.825874 | no |
| 3d_25C | 7d_30C | 0.772022 | no |
| 3d_25C | 10d_25C | 0.821446 | no |
| 5d_25C | 7d_25C | 0.888911 | no |
| 5d_25C | 7d_15C | 0.941467 | no |
| 5d_25C | 7d_30C | 0.897897 | no |
| 5d_25C | 10d_25C | 0.685751 | no |
| 7d_25C | 7d_15C | 0.953857 | no |
| 7d_25C | 7d_30C | 0.991648 | no |
| 7d_25C | 10d_25C | 0.539915 | no |
| 7d_15C | 7d_30C | 0.959894 | no |
| 7d_15C | 10d_25C | 0.614556 | no |
| 7d_30C | 10d_25C | 0.553156 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4694.t1 MSIRRLSAYQRHARDQKLLRLNENGTFQISVFSDLHFAEDDIADNKTAGVMKSVLSSEKVQLVVLNGDLISGEAT QKSNSSLYVDRVVAPLLDRGIPWASTYGNHDSEVNLDPEEIFRQETKYQNSLTERRVLDPAAGITNYYLPIFPHE ASNDTIPVFILWFFDSQGGHYALTEDGDGESTTRQNWVDDTVIQWFIKANANLTSTYGRTIPSLAFVHIPVHAMR AFQKSGVSPVREPGINGERVQQQGYDAESGYHSQDFPFISALLNTTGLAATFSGHDHDNDWCFKWDTKLNGLNVT GNGMNMCYGRHTGYGGYGDWARGGRQVLLDKRSLGDDIQTWIRMEDGSISGDVHLNATYGQDQYGLVQRSFSGQN GGLSPHLNVLYLWICIYWAYMQLN* |
| Coding | >Pro_DTO377G3_2|g4694.t1 ATGTCAATTCGCAGGCTGTCCGCGTACCAACGTCATGCCAGAGACCAAAAATTGTTGCGATTGAATGAGAATGGC ACGTTTCAAATATCAGTTTTTAGTGACTTGCATTTCGCTGAAGATGATATAGCGGACAACAAGACCGCAGGGGTC ATGAAATCCGTTCTTTCTTCGGAGAAAGTGCAACTCGTGGTACTCAATGGAGATTTAATCTCTGGTGAGGCCACC CAAAAGTCTAACTCGAGTCTTTACGTTGATCGGGTTGTTGCACCTCTACTCGACCGTGGTATACCATGGGCATCC ACCTATGGGAATCATGACAGCGAGGTGAATCTTGATCCAGAAGAGATCTTTCGTCAAGAGACAAAATATCAAAAC AGCCTAACCGAGAGAAGGGTTCTGGACCCCGCTGCCGGCATCACGAATTATTACCTGCCAATATTTCCACATGAG GCTTCGAATGACACTATCCCAGTATTTATCTTGTGGTTTTTTGACAGCCAAGGTGGTCATTATGCATTGACAGAG GATGGGGATGGCGAATCAACCACGAGACAGAATTGGGTAGATGATACAGTCATTCAATGGTTTATAAAAGCCAAT GCAAACCTAACGTCCACCTACGGGCGAACAATCCCATCTCTAGCCTTCGTCCATATTCCAGTTCATGCAATGCGC GCCTTCCAAAAATCCGGCGTCAGCCCGGTCAGGGAACCAGGAATCAACGGAGAAAGAGTCCAGCAACAAGGCTAC GATGCCGAGTCCGGCTACCATTCTCAAGACTTCCCATTTATAAGTGCTCTGTTAAACACCACGGGGTTAGCAGCA ACTTTCAGTGGACATGACCACGATAATGACTGGTGCTTCAAGTGGGATACTAAGCTAAATGGCCTCAATGTGACG GGAAATGGCATGAACATGTGCTACGGCCGGCATACGGGATATGGAGGGTATGGCGACTGGGCGCGTGGCGGAAGG CAGGTTTTGTTGGATAAGCGATCGCTTGGGGATGATATACAGACTTGGATTCGGATGGAAGATGGGTCAATTTCA GGCGATGTTCATCTCAATGCGACGTATGGCCAAGATCAATATGGGCTGGTGCAGAGGAGTTTCAGCGGGCAAAAT GGTGGTCTTTCTCCACACTTAAATGTTCTCTATTTGTGGATTTGTATTTACTGGGCTTATATGCAGTTGAACTGA |
| Transcript | >Pro_DTO377G3_2|g4694.t1 ATGTCAATTCGCAGGCTGTCCGCGTACCAACGTCATGCCAGAGACCAAAAATTGTTGCGATTGAATGAGAATGGC ACGTTTCAAATATCAGTTTTTAGTGACTTGCATTTCGCTGAAGATGATATAGCGGACAACAAGACCGCAGGGGTC ATGAAATCCGTTCTTTCTTCGGAGAAAGTGCAACTCGTGGTACTCAATGGAGATTTAATCTCTGGTGAGGCCACC CAAAAGTCTAACTCGAGTCTTTACGTTGATCGGGTTGTTGCACCTCTACTCGACCGTGGTATACCATGGGCATCC ACCTATGGGAATCATGACAGCGAGGTGAATCTTGATCCAGAAGAGATCTTTCGTCAAGAGACAAAATATCAAAAC AGCCTAACCGAGAGAAGGGTTCTGGACCCCGCTGCCGGCATCACGAATTATTACCTGCCAATATTTCCACATGAG GCTTCGAATGACACTATCCCAGTATTTATCTTGTGGTTTTTTGACAGCCAAGGTGGTCATTATGCATTGACAGAG GATGGGGATGGCGAATCAACCACGAGACAGAATTGGGTAGATGATACAGTCATTCAATGGTTTATAAAAGCCAAT GCAAACCTAACGTCCACCTACGGGCGAACAATCCCATCTCTAGCCTTCGTCCATATTCCAGTTCATGCAATGCGC GCCTTCCAAAAATCCGGCGTCAGCCCGGTCAGGGAACCAGGAATCAACGGAGAAAGAGTCCAGCAACAAGGCTAC GATGCCGAGTCCGGCTACCATTCTCAAGACTTCCCATTTATAAGTGCTCTGTTAAACACCACGGGGTTAGCAGCA ACTTTCAGTGGACATGACCACGATAATGACTGGTGCTTCAAGTGGGATACTAAGCTAAATGGCCTCAATGTGACG GGAAATGGCATGAACATGTGCTACGGCCGGCATACGGGATATGGAGGGTATGGCGACTGGGCGCGTGGCGGAAGG CAGGTTTTGTTGGATAAGCGATCGCTTGGGGATGATATACAGACTTGGATTCGGATGGAAGATGGGTCAATTTCA GGCGATGTTCATCTCAATGCGACGTATGGCCAAGATCAATATGGGCTGGTGCAGAGGAGTTTCAGCGGGCAAAAT GGTGGTCTTTCTCCACACTTAAATGTTCTCTATTTGTGGATTTGTATTTACTGGGCTTATATGCAGTTGAACTGA |
| Gene | >Pro_DTO377G3_2|g4694.t1 ATGTCAATTCGCAGGCTGTCCGCGTACCAACGTCATGCCAGAGACCAAAAATTGTTGCGATTGAATGAGAATGGC ACGTTTCAAATATCAGTTTTTAGTGACTTGCATTTCGCTGAAGGTATGCTGACAGACTCTTACCGTTGACTTGAG ATAGTAACTATGTAAAGATGATATAGCGGACAACAAGACCGCAGGGGTCATGAAATCCGTTCTTTCTTCGGAGAA AGTGCAACTCGTGGTACTCAATGGAGATTTAATCTCTGGTGAGGCCACCCAAAAGTCTAACTCGAGTCTTTACGT TGATCGGGTTGTTGCACCTCTACTCGACCGTGGTATACCATGGGCATCCACCTATGGGAATCATGACAGCGAGGT GAATCTTGATCCAGAAGAGATCTTTCGTCAAGAGACAAAATATCAAAACAGCCTAACCGAGAGAAGGGTTCTGGA CCCCGCTGCCGGCATCACGAATTATTACCTGCCAATATTTCCACATGAGGCTTCGAATGACACTATCCCAGTATT TATCTTGTGGTTTTTTGACAGCCAAGGTGGTCATTATGCATTGACAGAGGATGGGGATGGCGAATCAACCACGAG ACAGAATTGGGTAGATGATACAGTAAGTATCACCAGGGCTCTCACATGTTCCCATGCTTGATCCAAAAAGTCGAA TGCTTGGTCAATGGACTTGGTGTCGAGCTTTCACATACTGACTTGTTGCAGGTCATTCAATGGTTTATAAAAGCC AATGCAAACCTAACGTCCACCTACGGGCGAACAATCCCATCTCTAGCCTTCGTCCATATTCCAGTTCATGCAATG CGCGCCTTCCAAAAATCCGGCGTCAGCCCGGTCAGGGAACCAGGAATCAACGGAGAAAGAGTCCAGCAACAAGGC TACGATGCCGAGTCCGGCTACCATTCTCAAGACTTCCCATTTATAAGTGCTCTGTTAAACACCACGGGGTTAGCA GCAACTTTCAGTGGACATGACCACGATAATGACTGGTAAGAACCATACTGTGCTATACATTCTCTTCTCAGGTTG AAGTCAAAACGCAAAAACGCCTCATTTGACTAATAATAATCCTTTTCATAGGTGCTTCAAGTGGGATACTAAGCT AAATGGCCTCAATGTGACGGGAAATGGCATGAACATGTGCTACGGCCGGCATACGGGATATGGAGGGTATGGCGA CTGGGCGCGTGGCGGAAGGCAGGTTTTGTTGGATAAGCGATCGCTTGGGGATGATATACAGACTTGGATTCGGAT GGAAGATGGGTCAATTTCAGGCGATGTTCATCTCAATGCGACGTATGGCCAAGATCAATATGGGCTGGTGCAGAG GAGTTTCAGCGGGCAAAATGGTGGTCTTTCTCCACACTTAAATGTTCTCTATTTGTGGATTTGTATTTACTGGGC TTATATGCAGTTGAACTGA |