© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g468.t1 |
| Gene name | |
| Location | scaffold_01:1189057..1190971 |
| Strand | + |
| Gene length (bp) | 1914 |
| Transcript length (bp) | 1800 |
| Coding sequence length (bp) | 1800 |
| Protein length (aa) | 600 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01384 | PHO4 | Phosphate transporter family | 4.1E-111 | 24 | 583 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0005315 | inorganic phosphate transmembrane transporter activity | Yes |
| GO:0006817 | phosphate ion transport | Yes |
| GO:0006820 | anion transport | No |
| GO:0051179 | localization | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051234 | establishment of localization | No |
| GO:0005575 | cellular_component | No |
| GO:0015291 | secondary active transmembrane transporter activity | No |
| GO:0022804 | active transmembrane transporter activity | No |
| GO:0015698 | inorganic anion transport | No |
| GO:0006811 | ion transport | No |
| GO:0006810 | transport | No |
| GO:0008150 | biological_process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 22 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 47 | 69 | 22 |
| 2 | 84 | 103 | 19 |
| 3 | 116 | 138 | 22 |
| 4 | 148 | 170 | 22 |
| 5 | 182 | 204 | 22 |
| 6 | 219 | 241 | 22 |
| 7 | 382 | 399 | 17 |
| 8 | 479 | 501 | 22 |
| 9 | 569 | 591 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 13.31 | 6.38 | 20.24 |
| 5d_25C | Five days - 25 degrees Celsius | 10.08 | 4.47 | 15.70 |
| 7d_25C | Seven days - 25 degrees Celsius | 21.10 | 10.74 | 31.46 |
| 10d_25C | Ten days - 25 degrees Celsius | 13.12 | 5.80 | 20.45 |
| 7d_15C | Seven days - 15 degrees Celsius | 6.34 | 2.04 | 10.64 |
| 7d_30C | Seven days - 30 degrees Celsius | 6.27 | 2.04 | 10.51 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.418339 | no |
| 3d_25C | 7d_25C | 0.098891 | no |
| 3d_25C | 7d_15C | 0.024657 | yes |
| 3d_25C | 7d_30C | 0.026584 | yes |
| 3d_25C | 10d_25C | 0.977912 | no |
| 5d_25C | 7d_25C | 0.007091 | yes |
| 5d_25C | 7d_15C | 0.197586 | no |
| 5d_25C | 7d_30C | 0.189726 | no |
| 5d_25C | 10d_25C | 0.468423 | no |
| 7d_25C | 7d_15C | 0.000700 | yes |
| 7d_25C | 7d_30C | 0.000700 | yes |
| 7d_25C | 10d_25C | 0.104340 | no |
| 7d_15C | 7d_30C | 0.985550 | no |
| 7d_15C | 10d_25C | 0.024892 | yes |
| 7d_30C | 10d_25C | 0.028642 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g468.t1 MYLHQYDYIFAIGTLFAMLDAFNNGANDVANSWATSVSSRSISYRQAMVLGTIFEFVGAVAVGARTADTIKNGII PNSAFKGNAGVQMLAFTCALAAASSWVMWCTKHSAHVSSTYSLISAVAGVGVATVGASQVQWGWNDGKGLGAIFA GLGMAPVISGCFGAIIFMLIKYVVHVRRNPIPWAVWSAPFFFLVAATICTLSIVYKGSPSLGLSKKPAWYVAAVT MGTGGGVCLLSAFFFVPFIHSRVIKKDPSVKWWMVIQGPLLFTRPVPNGAEVAKVPNYAVVQEEPEEHESHLPID EKDPKTGVSSIPGSTEERSIEKLEANQLTYREVMAQSEERHKAKLLQSRGPIGWAMRLLRDNPMGAGEIYELRNL KCMAKRIPAIITVGLLYGFYYDIHTAQSGNEGTPEGERMKRVYANAEKYPNEVEHTFSFIQIITACTASFAHGAN DIGNSVGPWAAIYSAWSSGTPAASKSPVPVWQLAVLAICISIGLCTYGYNIMKVMGNKITYHSPSRGSSMEMGAA ITVLVFSQYSLPVSTSMCITGATVGVGLCNGTYKAVNWQRVFLLLFAWIMTIPIAGTLGGCLMGLVLNAPHFLV* |
| Coding | >Pro_DTO377G3_2|g468.t1 ATGTATCTCCATCAATACGATTACATCTTTGCCATCGGCACGTTGTTTGCTATGCTTGATGCATTCAACAACGGT GCAAACGATGTTGCCAATTCTTGGGCCACGAGTGTCTCCTCCCGGTCCATCTCCTACCGCCAGGCTATGGTCCTC GGTACCATCTTCGAGTTTGTCGGAGCTGTCGCTGTCGGTGCCCGTACCGCTGATACTATCAAGAACGGCATCATC CCCAACTCGGCCTTCAAGGGCAATGCCGGTGTTCAAATGCTCGCCTTCACATGTGCCCTTGCCGCTGCATCCTCA TGGGTGATGTGGTGTACCAAGCACTCCGCCCACGTCTCCTCCACCTACTCCCTCATCTCTGCTGTCGCCGGTGTC GGTGTTGCAACTGTTGGCGCTTCCCAGGTCCAGTGGGGCTGGAACGATGGCAAGGGTCTCGGTGCCATCTTCGCT GGTCTCGGCATGGCTCCTGTCATTTCCGGTTGCTTTGGCGCTATTATCTTCATGCTGATCAAGTACGTCGTGCAT GTGCGGAGAAACCCTATCCCCTGGGCCGTGTGGAGTGCTCCTTTCTTCTTCCTGGTTGCTGCCACCATTTGCACG CTCTCCATTGTTTACAAGGGCTCTCCCAGCCTGGGTCTGAGCAAGAAGCCCGCCTGGTACGTTGCCGCCGTCACT ATGGGCACTGGTGGTGGTGTCTGCCTTTTGTCTGCTTTCTTCTTTGTTCCTTTCATTCACTCCCGCGTGATCAAG AAGGACCCTAGTGTGAAGTGGTGGATGGTCATCCAGGGCCCTCTGCTCTTCACCCGTCCCGTCCCTAACGGTGCT GAAGTTGCCAAGGTTCCCAACTACGCCGTGGTGCAAGAGGAACCCGAGGAGCACGAGTCTCACCTGCCTATCGAT GAGAAGGATCCCAAGACCGGTGTTTCCTCCATCCCAGGCTCCACGGAGGAGCGATCCATTGAAAAGCTCGAGGCC AATCAGCTCACCTACCGCGAAGTCATGGCCCAATCCGAAGAGCGTCACAAGGCCAAGCTCCTCCAGAGCCGTGGT CCTATTGGCTGGGCTATGCGCCTTCTCCGCGACAACCCCATGGGCGCTGGTGAGATTTACGAACTCCGCAACCTG AAGTGCATGGCCAAGCGCATCCCCGCCATCATCACTGTCGGTCTTCTCTATGGTTTCTACTACGACATCCACACT GCCCAGAGTGGTAACGAGGGTACTCCGGAGGGTGAGCGTATGAAGCGTGTCTATGCCAACGCCGAGAAATACCCC AATGAGGTCGAACACACCTTCTCCTTCATCCAGATCATCACTGCTTGCACTGCTTCCTTCGCTCACGGCGCCAAC GATATCGGTAACTCTGTCGGCCCCTGGGCTGCCATCTACTCTGCCTGGTCCAGCGGTACTCCTGCCGCGTCCAAG TCCCCCGTGCCTGTCTGGCAGCTTGCTGTTCTAGCCATTTGCATTTCCATCGGTCTTTGCACTTATGGATATAAC ATCATGAAAGTCATGGGTAACAAGATCACCTACCACTCCCCGTCCCGTGGCTCCTCCATGGAGATGGGCGCTGCC ATCACGGTGCTGGTCTTCTCGCAGTACTCCCTGCCCGTTTCCACTTCTATGTGCATCACTGGCGCTACCGTCGGT GTTGGACTATGCAACGGAACTTACAAGGCCGTCAACTGGCAGCGTGTCTTCCTTTTGTTGTTCGCATGGATCATG ACCATCCCCATCGCTGGTACCCTTGGCGGATGCTTGATGGGATTGGTCCTCAACGCTCCCCATTTCCTTGTTTAG |
| Transcript | >Pro_DTO377G3_2|g468.t1 ATGTATCTCCATCAATACGATTACATCTTTGCCATCGGCACGTTGTTTGCTATGCTTGATGCATTCAACAACGGT GCAAACGATGTTGCCAATTCTTGGGCCACGAGTGTCTCCTCCCGGTCCATCTCCTACCGCCAGGCTATGGTCCTC GGTACCATCTTCGAGTTTGTCGGAGCTGTCGCTGTCGGTGCCCGTACCGCTGATACTATCAAGAACGGCATCATC CCCAACTCGGCCTTCAAGGGCAATGCCGGTGTTCAAATGCTCGCCTTCACATGTGCCCTTGCCGCTGCATCCTCA TGGGTGATGTGGTGTACCAAGCACTCCGCCCACGTCTCCTCCACCTACTCCCTCATCTCTGCTGTCGCCGGTGTC GGTGTTGCAACTGTTGGCGCTTCCCAGGTCCAGTGGGGCTGGAACGATGGCAAGGGTCTCGGTGCCATCTTCGCT GGTCTCGGCATGGCTCCTGTCATTTCCGGTTGCTTTGGCGCTATTATCTTCATGCTGATCAAGTACGTCGTGCAT GTGCGGAGAAACCCTATCCCCTGGGCCGTGTGGAGTGCTCCTTTCTTCTTCCTGGTTGCTGCCACCATTTGCACG CTCTCCATTGTTTACAAGGGCTCTCCCAGCCTGGGTCTGAGCAAGAAGCCCGCCTGGTACGTTGCCGCCGTCACT ATGGGCACTGGTGGTGGTGTCTGCCTTTTGTCTGCTTTCTTCTTTGTTCCTTTCATTCACTCCCGCGTGATCAAG AAGGACCCTAGTGTGAAGTGGTGGATGGTCATCCAGGGCCCTCTGCTCTTCACCCGTCCCGTCCCTAACGGTGCT GAAGTTGCCAAGGTTCCCAACTACGCCGTGGTGCAAGAGGAACCCGAGGAGCACGAGTCTCACCTGCCTATCGAT GAGAAGGATCCCAAGACCGGTGTTTCCTCCATCCCAGGCTCCACGGAGGAGCGATCCATTGAAAAGCTCGAGGCC AATCAGCTCACCTACCGCGAAGTCATGGCCCAATCCGAAGAGCGTCACAAGGCCAAGCTCCTCCAGAGCCGTGGT CCTATTGGCTGGGCTATGCGCCTTCTCCGCGACAACCCCATGGGCGCTGGTGAGATTTACGAACTCCGCAACCTG AAGTGCATGGCCAAGCGCATCCCCGCCATCATCACTGTCGGTCTTCTCTATGGTTTCTACTACGACATCCACACT GCCCAGAGTGGTAACGAGGGTACTCCGGAGGGTGAGCGTATGAAGCGTGTCTATGCCAACGCCGAGAAATACCCC AATGAGGTCGAACACACCTTCTCCTTCATCCAGATCATCACTGCTTGCACTGCTTCCTTCGCTCACGGCGCCAAC GATATCGGTAACTCTGTCGGCCCCTGGGCTGCCATCTACTCTGCCTGGTCCAGCGGTACTCCTGCCGCGTCCAAG TCCCCCGTGCCTGTCTGGCAGCTTGCTGTTCTAGCCATTTGCATTTCCATCGGTCTTTGCACTTATGGATATAAC ATCATGAAAGTCATGGGTAACAAGATCACCTACCACTCCCCGTCCCGTGGCTCCTCCATGGAGATGGGCGCTGCC ATCACGGTGCTGGTCTTCTCGCAGTACTCCCTGCCCGTTTCCACTTCTATGTGCATCACTGGCGCTACCGTCGGT GTTGGACTATGCAACGGAACTTACAAGGCCGTCAACTGGCAGCGTGTCTTCCTTTTGTTGTTCGCATGGATCATG ACCATCCCCATCGCTGGTACCCTTGGCGGATGCTTGATGGGATTGGTCCTCAACGCTCCCCATTTCCTTGTTTAG |
| Gene | >Pro_DTO377G3_2|g468.t1 ATGTATCTCCATCAATACGATTACATCTTTGCCATCGGCACGTTGTTTGCTATGCTTGATGCATTCAACAACGGT GCAAGTAAGTAGCAGCCTATCCTTGGATGGTTGACCTCGAACTAACCATTGGATGTCTATAGACGATGTTGCCAA TTCTTGGGCCACGAGTGTCTCCTCCCGGTCCATCTCCTACCGCCAGGCTATGGTCCTCGGTACCATCTTCGAGTT TGTCGGAGCTGTCGCTGTCGGTGCCCGTACCGCTGATACTATCAAGAACGGCATCATCCCCAACTCGGCCTTCAA GGGCAATGCCGGTGTTCAAATGCTCGCCTTCACATGTGCCCTTGCCGCTGCATCCTCATGGGTGATGTGGTGTAC CAAGCACTCCGCCCACGTCTCCTCCACCTACTCCCTCATCTCTGCTGTCGCCGGTGTCGGTGTTGCAACTGTTGG CGCTTCCCAGGTCCAGTGGGGCTGGAACGATGGCAAGGGTCTCGGTGCCATCTTCGCTGGTCTCGGCATGGCTCC TGTCATTTCCGGTTGCTTTGGCGCTATTATCTTCATGCTGATCAAGTACGTCGTGCATGTGCGGAGAAACCCTAT CCCCTGGGCCGTGTGGAGTGCTCCTTTCTTCTTCCTGGTTGCTGCCACCATTTGCACGCTCTCCATTGTTTACAA GGGCTCTCCCAGCCTGGGTCTGAGCAAGAAGCCCGCCTGGTACGTTGCCGCCGTCACTATGGGCACTGGTGGTGG TGTCTGCCTTTTGTCTGCTTTCTTCTTTGTTCCTTTCATTCACTCCCGCGTGATCAAGAAGGACCCTAGTGTGAA GTGGTGGATGGTCATCCAGGGCCCTCTGCTCTTCACCCGTCCCGTCCCTAACGGTGCTGAAGTTGCCAAGGTTCC CAACTACGCCGTGGTGCAAGAGGAACCCGAGGAGCACGAGTCTCACCTGCCTATCGATGAGAAGGATCCCAAGAC CGGTGTTTCCTCCATCCCAGGCTCCACGGAGGAGCGATCCATTGAAAAGCTCGAGGCCAATCAGCTCACCTACCG CGAAGTCATGGCCCAATCCGAAGAGCGTCACAAGGCCAAGCTCCTCCAGAGCCGTGGTCCTATTGGCTGGGCTAT GCGCCTTCTCCGCGACAACCCCATGGGCGCTGGTGAGATTTACGAACTCCGCAACCTGAAGTGCATGGCCAAGCG CATCCCCGCCATCATCACTGTCGGTCTTCTCTATGGTTTCTACTACGACATCCACACTGCCCAGAGTGGTAACGA GGGTACTCCGGAGGGTGAGCGTATGAAGCGTGTCTATGCCAACGCCGAGAAATACCCCAATGAGGTCGAACACAC CTTCTCCTTCATCCAGATCATCACTGCTTGCACTGCTTCCTTCGCTCACGGCGCCAACGATATCGGTAACTCTGT CGGCCCCTGGGCTGCCATCTACTCTGCCTGGTCCAGCGGTACTCCTGCCGCGTCCAAGTCCCCCGTGCCTGTCTG GCAGCTTGCTGTTCTAGCCATTTGCATTTCCATCGGTCTTTGCACTTATGGATATAACATCATGAAAGGTAAGCA CCTCTTCCTTCCACATTCCAATCTTCATTTTTACTAACTTTAAACTTAGTCATGGGTAACAAGATCACCTACCAC TCCCCGTCCCGTGGCTCCTCCATGGAGATGGGCGCTGCCATCACGGTGCTGGTCTTCTCGCAGTACTCCCTGCCC GTTTCCACTTCTATGTGCATCACTGGCGCTACCGTCGGTGTTGGACTATGCAACGGAACTTACAAGGCCGTCAAC TGGCAGCGTGTCTTCCTTTTGTTGTTCGCATGGATCATGACCATCCCCATCGCTGGTACCCTTGGCGGATGCTTG ATGGGATTGGTCCTCAACGCTCCCCATTTCCTTGTTTAG |