© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g4650.t1 |
| Gene name | |
| Location | scaffold_10:70014..70962 |
| Strand | + |
| Gene length (bp) | 948 |
| Transcript length (bp) | 819 |
| Coding sequence length (bp) | 819 |
| Protein length (aa) | 273 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00462 | Glutaredoxin | Glutaredoxin | 1.3E-11 | 168 | 233 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0097573 | glutathione oxidoreductase activity | Yes |
| GO:0016491 | oxidoreductase activity | No |
| GO:0015035 | protein-disulfide reductase activity | No |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0015036 | disulfide oxidoreductase activity | No |
| GO:0016667 | oxidoreductase activity, acting on a sulfur group of donors | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 30 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 211.56 | 130.05 | 293.07 |
| 5d_25C | Five days - 25 degrees Celsius | 277.38 | 169.30 | 385.47 |
| 7d_25C | Seven days - 25 degrees Celsius | 326.26 | 196.99 | 455.52 |
| 10d_25C | Ten days - 25 degrees Celsius | 453.96 | 270.69 | 637.22 |
| 7d_15C | Seven days - 15 degrees Celsius | 245.67 | 150.64 | 340.69 |
| 7d_30C | Seven days - 30 degrees Celsius | 298.34 | 180.76 | 415.93 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.238276 | no |
| 3d_25C | 7d_25C | 0.043019 | yes |
| 3d_25C | 7d_15C | 0.562213 | no |
| 3d_25C | 7d_30C | 0.106747 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.535833 | no |
| 5d_25C | 7d_15C | 0.655421 | no |
| 5d_25C | 7d_30C | 0.807241 | no |
| 5d_25C | 10d_25C | 0.018560 | yes |
| 7d_25C | 7d_15C | 0.204236 | no |
| 7d_25C | 7d_30C | 0.759288 | no |
| 7d_25C | 10d_25C | 0.146643 | no |
| 7d_15C | 7d_30C | 0.422019 | no |
| 7d_15C | 10d_25C | 0.001278 | yes |
| 7d_30C | 10d_25C | 0.046757 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g4650.t1 MPSSQRRLRLIVVVVIALLFMVFYYTGDASKIQNQKFYRSTLDAMKAKEQAKQAKAQEKIQNPVHAPGQNGAAGA GAGDKVPVAAAEKAAVPPATGNEDTEEIPIAGRTKMTVPKKVNQDKPSEVQSEIKSEEEKEREEKAKREREEKER KEAEATTELNAILKRAPVIVFSKSYCPYSKKAKVILLEHYSIEPKPFVVELDQHPLGPYLQALLAQSTGRRTVPN VLVSGKSIGGGDDIAALDQSDELASTLRQMGGKWIVDVSHQAVEKSL* |
| Coding | >Pro_DTO377G3_2|g4650.t1 ATGCCTTCTTCCCAACGGCGGCTTCGACTGATCGTCGTTGTGGTCATCGCGCTTCTTTTTATGGTCTTTTACTAC ACCGGTGATGCAAGCAAAATCCAAAACCAAAAGTTCTATCGGTCAACCCTCGACGCAATGAAAGCGAAAGAGCAA GCTAAGCAGGCCAAGGCCCAAGAGAAAATCCAGAATCCCGTGCATGCGCCCGGACAGAATGGCGCTGCGGGTGCG GGTGCGGGTGACAAGGTGCCTGTCGCTGCGGCCGAGAAAGCTGCTGTTCCTCCTGCTACAGGGAATGAAGATACG GAGGAGATACCGATTGCGGGGAGGACGAAGATGACCGTTCCCAAGAAGGTGAATCAGGATAAGCCGTCAGAGGTT CAGTCGGAGATCAAGAGCGAGGAGGAGAAGGAGCGAGAGGAAAAAGCGAAGAGAGAGCGTGAGGAGAAAGAGAGG AAAGAGGCCGAGGCGACAACAGAGCTTAATGCCATTCTCAAGCGGGCTCCAGTCATCGTATTCTCCAAATCCTAT TGCCCCTACAGCAAGAAAGCCAAGGTGATCTTGCTGGAGCACTACTCTATCGAGCCGAAGCCATTCGTGGTCGAA TTGGATCAGCACCCGCTTGGGCCGTATCTGCAGGCCCTGCTCGCACAGAGCACGGGTCGTCGCACTGTGCCGAAT GTGCTCGTGAGCGGAAAGAGTATAGGTGGTGGAGACGATATTGCGGCATTGGATCAGAGCGACGAGCTGGCTTCG ACGCTGCGACAAATGGGTGGGAAATGGATCGTGGACGTGTCGCACCAGGCGGTTGAGAAATCACTATGA |
| Transcript | >Pro_DTO377G3_2|g4650.t1 ATGCCTTCTTCCCAACGGCGGCTTCGACTGATCGTCGTTGTGGTCATCGCGCTTCTTTTTATGGTCTTTTACTAC ACCGGTGATGCAAGCAAAATCCAAAACCAAAAGTTCTATCGGTCAACCCTCGACGCAATGAAAGCGAAAGAGCAA GCTAAGCAGGCCAAGGCCCAAGAGAAAATCCAGAATCCCGTGCATGCGCCCGGACAGAATGGCGCTGCGGGTGCG GGTGCGGGTGACAAGGTGCCTGTCGCTGCGGCCGAGAAAGCTGCTGTTCCTCCTGCTACAGGGAATGAAGATACG GAGGAGATACCGATTGCGGGGAGGACGAAGATGACCGTTCCCAAGAAGGTGAATCAGGATAAGCCGTCAGAGGTT CAGTCGGAGATCAAGAGCGAGGAGGAGAAGGAGCGAGAGGAAAAAGCGAAGAGAGAGCGTGAGGAGAAAGAGAGG AAAGAGGCCGAGGCGACAACAGAGCTTAATGCCATTCTCAAGCGGGCTCCAGTCATCGTATTCTCCAAATCCTAT TGCCCCTACAGCAAGAAAGCCAAGGTGATCTTGCTGGAGCACTACTCTATCGAGCCGAAGCCATTCGTGGTCGAA TTGGATCAGCACCCGCTTGGGCCGTATCTGCAGGCCCTGCTCGCACAGAGCACGGGTCGTCGCACTGTGCCGAAT GTGCTCGTGAGCGGAAAGAGTATAGGTGGTGGAGACGATATTGCGGCATTGGATCAGAGCGACGAGCTGGCTTCG ACGCTGCGACAAATGGGTGGGAAATGGATCGTGGACGTGTCGCACCAGGCGGTTGAGAAATCACTATGA |
| Gene | >Pro_DTO377G3_2|g4650.t1 ATGCCTTCTTCCCAACGGCGGCTTCGACTGATCGTCGTTGTGGTCATCGCGCTTCTTTTTATGGTCTTTTACTAC ACCGTGCGTCACCGGATCTCCCCCTTCCACACTGTTTCTTCAGATATCTAATACGACGCAATCGGATCCACAGGG TGATGCAAGCAAAATCCAAAACCAAAAGTTCTATCGGTCAACCCTCGACGCAATGAAAGCGAAAGAGCAAGCTAA GCAGGCCAAGGCCCAAGAGAAAATCCAGAATCCCGTGCATGCGCCCGGACAGAATGGCGCTGCGGGTGCGGGTGC GGGTGACAAGGTGCCTGTCGCTGCGGCCGAGAAAGCTGCTGTTCCTCCTGCTACAGGGAATGAAGATACGGAGGA GATACCGATTGCGGGGAGGACGAAGATGACCGTTCCCAAGAAGGTGAATCAGGATAAGCCGTCAGAGGTTCAGTC GGAGATCAAGAGCGAGGAGGAGAAGGAGCGAGAGGAAAAAGCGAAGAGAGAGCGTGAGGAGAAAGAGAGGAAAGA GGCCGAGGCGACAACAGAGCTTAATGCCATTCTCAAGCGGGCTCCAGGTATGTTTCTTTCCCCCGTTTTCCATTT CTGGCCCGTATCCAATACCAACAACATCCAGTCATCGTATTCTCCAAATCCTATTGCCCCTACAGCAAGAAAGCC AAGGTGATCTTGCTGGAGCACTACTCTATCGAGCCGAAGCCATTCGTGGTCGAATTGGATCAGCACCCGCTTGGG CCGTATCTGCAGGCCCTGCTCGCACAGAGCACGGGTCGTCGCACTGTGCCGAATGTGCTCGTGAGCGGAAAGAGT ATAGGTGGTGGAGACGATATTGCGGCATTGGATCAGAGCGACGAGCTGGCTTCGACGCTGCGACAAATGGGTGGG AAATGGATCGTGGACGTGTCGCACCAGGCGGTTGAGAAATCACTATGA |