© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g463.t1 |
| Gene name | |
| Location | scaffold_01:1176668..1178043 |
| Strand | - |
| Gene length (bp) | 1375 |
| Transcript length (bp) | 1194 |
| Coding sequence length (bp) | 1194 |
| Protein length (aa) | 398 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01699 | Na_Ca_ex | Sodium/calcium exchanger protein | 1.5E-13 | 63 | 216 |
| PF01699 | Na_Ca_ex | Sodium/calcium exchanger protein | 2.9E-10 | 254 | 395 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 67 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 57 | 76 | 19 |
| 2 | 96 | 118 | 22 |
| 3 | 128 | 150 | 22 |
| 4 | 163 | 185 | 22 |
| 5 | 195 | 217 | 22 |
| 6 | 249 | 271 | 22 |
| 7 | 286 | 308 | 22 |
| 8 | 321 | 343 | 22 |
| 9 | 348 | 370 | 22 |
| 10 | 377 | 396 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g463.t1 MVSRRDTQPAPSHHRQDPWIHIQRFFKMPSQNGLKELSINHGRPAMVLLPLAGLAKIFHWNPIIVLTVNILAIIF LSEAISTSSDELTAHLGELQGALLSATLGNTVELTAGILALIHDEIPFAQSVMVGSILSDILLVFGCCLVTASYN KEVLEFNSALAKTLSSLMMITAVTMLLPTALYSTFPVSEIDDRVLYFSRGTSLVLLALYGGYLYFYLGTHKHLFL SNEIEASDDENNGVSSSAANKASLASSIIRLTTAVAATVFCTELLLESVDNMAQTLGVSEVFIAIVFIPIASNST EGVTVIAASRTGDTDSAIRVIIDSLLQIGLFVIPFLVVIGWCIAEPMTLFFDSFQTVTMFLAILVVNHLLRDGQY AYIHGAMLIALYSSLVVAFYAH* |
| Coding | >Pro_DTO377G3_2|g463.t1 ATGGTATCTCGCCGAGACACTCAGCCAGCGCCTAGCCACCATCGCCAGGACCCTTGGATTCACATCCAGAGGTTC TTCAAGATGCCATCGCAAAATGGACTGAAGGAACTGAGCATCAATCATGGACGGCCAGCAATGGTGCTGCTACCT CTGGCTGGGCTTGCAAAGATATTTCACTGGAACCCGATCATAGTCCTCACGGTGAATATCCTCGCCATTATCTTC TTGTCCGAGGCGATATCCACCTCATCAGATGAACTCACTGCGCATCTTGGAGAGCTGCAAGGTGCACTACTCAGT GCCACACTCGGAAATACAGTAGAGCTCACGGCGGGAATTCTAGCTCTGATTCATGACGAGATCCCATTTGCACAG TCTGTGATGGTTGGCAGTATTCTCTCGGATATTTTGCTTGTATTCGGTTGCTGCCTCGTCACAGCTTCGTACAAC AAGGAGGTTTTGGAGTTTAACAGCGCTCTTGCAAAGACTTTGTCTTCTTTGATGATGATCACAGCCGTCACGATG CTTCTTCCAACGGCTCTGTATTCGACTTTCCCAGTATCTGAGATCGATGACAGAGTACTATACTTCTCACGAGGA ACATCATTGGTACTCCTCGCGCTCTACGGAGGTTACCTTTACTTCTACCTCGGTACTCACAAACATCTCTTCCTT TCGAACGAGATCGAAGCTAGTGACGATGAAAATAACGGAGTTTCATCATCCGCAGCCAACAAAGCCAGCTTAGCT TCATCAATTATCCGATTGACAACAGCCGTGGCCGCAACAGTCTTTTGCACAGAACTCCTGCTTGAAAGTGTTGAC AACATGGCGCAGACGCTTGGAGTCTCTGAAGTTTTCATAGCAATTGTCTTTATTCCAATCGCTAGCAATAGCACC GAGGGGGTTACTGTCATTGCGGCATCTCGCACAGGAGATACAGATTCTGCAATCCGCGTTATCATCGACAGTCTC TTGCAGATTGGTCTATTTGTCATACCATTCTTGGTGGTTATCGGCTGGTGCATTGCTGAACCGATGACACTTTTC TTCGACTCATTCCAGACCGTGACCATGTTTTTGGCCATTCTGGTGGTTAATCATCTACTTCGTGATGGACAGTAC GCTTACATCCATGGTGCGATGCTGATTGCTCTCTATTCAAGTTTGGTTGTGGCGTTCTATGCACACTAG |
| Transcript | >Pro_DTO377G3_2|g463.t1 ATGGTATCTCGCCGAGACACTCAGCCAGCGCCTAGCCACCATCGCCAGGACCCTTGGATTCACATCCAGAGGTTC TTCAAGATGCCATCGCAAAATGGACTGAAGGAACTGAGCATCAATCATGGACGGCCAGCAATGGTGCTGCTACCT CTGGCTGGGCTTGCAAAGATATTTCACTGGAACCCGATCATAGTCCTCACGGTGAATATCCTCGCCATTATCTTC TTGTCCGAGGCGATATCCACCTCATCAGATGAACTCACTGCGCATCTTGGAGAGCTGCAAGGTGCACTACTCAGT GCCACACTCGGAAATACAGTAGAGCTCACGGCGGGAATTCTAGCTCTGATTCATGACGAGATCCCATTTGCACAG TCTGTGATGGTTGGCAGTATTCTCTCGGATATTTTGCTTGTATTCGGTTGCTGCCTCGTCACAGCTTCGTACAAC AAGGAGGTTTTGGAGTTTAACAGCGCTCTTGCAAAGACTTTGTCTTCTTTGATGATGATCACAGCCGTCACGATG CTTCTTCCAACGGCTCTGTATTCGACTTTCCCAGTATCTGAGATCGATGACAGAGTACTATACTTCTCACGAGGA ACATCATTGGTACTCCTCGCGCTCTACGGAGGTTACCTTTACTTCTACCTCGGTACTCACAAACATCTCTTCCTT TCGAACGAGATCGAAGCTAGTGACGATGAAAATAACGGAGTTTCATCATCCGCAGCCAACAAAGCCAGCTTAGCT TCATCAATTATCCGATTGACAACAGCCGTGGCCGCAACAGTCTTTTGCACAGAACTCCTGCTTGAAAGTGTTGAC AACATGGCGCAGACGCTTGGAGTCTCTGAAGTTTTCATAGCAATTGTCTTTATTCCAATCGCTAGCAATAGCACC GAGGGGGTTACTGTCATTGCGGCATCTCGCACAGGAGATACAGATTCTGCAATCCGCGTTATCATCGACAGTCTC TTGCAGATTGGTCTATTTGTCATACCATTCTTGGTGGTTATCGGCTGGTGCATTGCTGAACCGATGACACTTTTC TTCGACTCATTCCAGACCGTGACCATGTTTTTGGCCATTCTGGTGGTTAATCATCTACTTCGTGATGGACAGTAC GCTTACATCCATGGTGCGATGCTGATTGCTCTCTATTCAAGTTTGGTTGTGGCGTTCTATGCACACTAG |
| Gene | >Pro_DTO377G3_2|g463.t1 ATGGTATCTCGCCGAGACACTCAGCCAGCGCCTAGCCACCATCGCCAGGACCCTTGGATTCACATCCAGAGGTTC TTCAAGATGCCATCGCAAAATGGACTGAAGGAACTGAGCATCAATCATGGACGGCCAGCAATGGTGCTGCTACCT CTGGCTGGGCTTGCAAAGATATTTCACTGGAACCCGATCATAGTCCTCACGGTGAATATCCTCGCCATTATCTTC TTGTCCGAGGCGATATCCACCTCATCAGATGAACTCACTGCGCATCTTGGAGAGCTGCAAGGTGCACTACTCAGT GCCACACTCGGAAATACAGTAGAGCTCACGGTGAGTAACAATATTGCCCTGAATATCGAAATGACAAAATGCTCA CTCAGCCCAGGCGGGAATTCTAGCTCTGATTCATGACGAGATCCCATTTGCACAGTCTGTGATGGTTGGCAGTAT TCTCTCGGATATTTTGCTTGTAAGTCCTCACATTATGAAAGTCCCAGTGTTGGCCATATCATCCGGACTGACAGC TCAATCTAGGTATTCGGTTGCTGCCTCGTCACAGCTTCGTACAACAAGGAGGTTTTGGAGTTTAACAGCGCTCTT GCAAAGACTTTGTCTTCTTTGATGATGATCACAGCCGTCACGATGCTTCTTCCAACGGCTCTGTATTCGACTTTC CCAGTATCTGAGATCGATGACAGAGTACTATACTTCTCACGAGGAACATCATTGGTACTCCTCGCGCTCTACGGA GGTTACCTTTACTTCTACCTCGGTACTCACAAACATCTCTTCCTTTCGAACGAGATCGAAGCTAGTGACGATGAA AATAACGGAGTTTCATCATCCGCAGCCAACAAAGCCAGCTTAGCTTCATCAATTATCCGATTGACAACAGCCGTG GCCGCAACAGTCTTTTGCACAGAACTCCTGCTTGAAAGTGTTGACAACATGGCGCAGACGCTTGGAGTCTCTGAA GTTTTCATAGCAATTGTCTTTATTCCAATCGCTAGCAATAGCACCGAGGGGGTTACTGTCATTGCGGCATCTCGC ACAGGAGATACAGATTCTGCAATCCGCGTTATCATCGACAGTCTCTTGCAGATTGGTCTATTTGTCATACCATTC TTGGTGGTTATCGGCTGGTGCATTGCTGAACCGATGACACTTTTCTTCGACTCATTCCAGACCGTGACCATGTTT TTGGCCATTCTGGTGGTTAATCATCTACTTCGTGATGGACAGTACGCTTACATCCATGGTGCGATGCTGATTGCT CTGTAAGTTTCTCTAGACTCCTTACTGATTTTTAAAAGTACTTTTATTGATGTATGATTATAGCTATTCAAGTTT GGTTGTGGCGTTCTATGCACACTAG |