© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g462.t1 |
| Gene name | |
| Location | scaffold_01:1175204..1176602 |
| Strand | + |
| Gene length (bp) | 1398 |
| Transcript length (bp) | 1197 |
| Coding sequence length (bp) | 1197 |
| Protein length (aa) | 399 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01699 | Na_Ca_ex | Sodium/calcium exchanger protein | 3.2E-07 | 44 | 199 |
| PF01699 | Na_Ca_ex | Sodium/calcium exchanger protein | 1.4E-07 | 243 | 383 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 22 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 20 | 42 | 22 |
| 2 | 44 | 62 | 18 |
| 3 | 109 | 131 | 22 |
| 4 | 144 | 163 | 19 |
| 5 | 178 | 200 | 22 |
| 6 | 244 | 266 | 22 |
| 7 | 271 | 290 | 19 |
| 8 | 310 | 332 | 22 |
| 9 | 342 | 359 | 17 |
| 10 | 366 | 385 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g462.t1 MSPNRASPMLYFNFIMAQVQHHLRLLSLLIPLIGIIAGALNWNSVAIFTLNIVAVIPLGLWVNRSVDSLTVGGSR VVNELLKSTLGNSVELMIGINAIAQKKSHISQSVILGSVLSNLLLVLGGTIFVSGYDQKRLRFDRTLTTILSSLM MVVFILLALPTIMEVFPSAKATPADHILLTQRIAAIILVILLLTFLIFRLGTHAAMFASTPFSQRAQAHGGRSQI IEAQIPQPYFGKASASMILAAASASALACTYYIVGCLGGVASITGMNQSFLAVTVVPLVGNSVKYRRIVMGSRTY NQIELGIRAVVNNVLRVTMLIAPLLVLVGWGFDQPLILRFDGFEATMLLLSVVVMTYLISDGRSNYFEGLMLIGT YMIITFSFFVRPEVPANVIYLGG* |
| Coding | >Pro_DTO377G3_2|g462.t1 ATGTCTCCCAATCGAGCTTCACCTATGCTATACTTCAATTTTATCATGGCACAGGTCCAGCACCACCTGCGCCTC TTGTCACTTTTGATACCTCTCATCGGTATCATAGCAGGAGCCCTCAATTGGAACAGTGTTGCTATCTTCACCCTC AACATCGTCGCTGTGATTCCGCTTGGATTATGGGTTAACCGATCAGTCGATTCGTTGACTGTAGGTGGCAGCCGA GTTGTCAATGAACTGCTGAAATCAACACTGGGAAATTCGGTGGAATTGATGATCGGAATTAATGCGATCGCGCAA AAAAAATCACACATCTCCCAATCTGTGATACTTGGAAGTGTCCTGAGCAATTTACTGCTGGTCCTCGGTGGCACC ATTTTCGTCTCAGGATACGACCAAAAACGACTCCGATTTGATCGTACCCTCACAACAATCCTCTCATCCCTCATG ATGGTCGTCTTCATCCTCCTCGCCCTCCCAACCATAATGGAGGTCTTCCCATCTGCCAAAGCCACCCCTGCAGAC CACATACTCTTAACGCAACGCATAGCGGCCATTATACTCGTCATCCTGCTCCTCACATTCCTCATTTTCCGCCTC GGCACCCATGCGGCCATGTTCGCTAGCACCCCATTCAGCCAGCGAGCTCAAGCCCACGGCGGCCGGTCTCAGATA ATCGAGGCCCAGATTCCACAGCCGTATTTTGGCAAGGCTTCAGCATCTATGATTCTAGCAGCTGCATCCGCGTCC GCGCTTGCGTGCACATATTACATAGTAGGTTGTTTGGGTGGGGTTGCTTCAATCACGGGTATGAATCAGTCTTTC CTTGCCGTGACAGTTGTTCCACTGGTCGGAAACTCGGTTAAGTACCGCCGCATTGTGATGGGGTCCCGGACTTAC AATCAGATCGAGCTTGGAATCAGGGCGGTTGTTAACAATGTGTTGCGGGTTACGATGCTTATTGCTCCGCTACTG GTTCTCGTTGGTTGGGGTTTTGACCAGCCGCTTATTCTGAGATTTGATGGGTTTGAGGCTACAATGCTTTTGCTT AGTGTTGTGGTGATGACCTATCTTATTTCTGATGGGCGGAGCAATTACTTCGAGGGGTTGATGTTGATTGGAACA TACATGATTATCACGTTCTCGTTCTTTGTTAGGCCTGAGGTGCCGGCGAATGTGATTTACCTAGGTGGTTAG |
| Transcript | >Pro_DTO377G3_2|g462.t1 ATGTCTCCCAATCGAGCTTCACCTATGCTATACTTCAATTTTATCATGGCACAGGTCCAGCACCACCTGCGCCTC TTGTCACTTTTGATACCTCTCATCGGTATCATAGCAGGAGCCCTCAATTGGAACAGTGTTGCTATCTTCACCCTC AACATCGTCGCTGTGATTCCGCTTGGATTATGGGTTAACCGATCAGTCGATTCGTTGACTGTAGGTGGCAGCCGA GTTGTCAATGAACTGCTGAAATCAACACTGGGAAATTCGGTGGAATTGATGATCGGAATTAATGCGATCGCGCAA AAAAAATCACACATCTCCCAATCTGTGATACTTGGAAGTGTCCTGAGCAATTTACTGCTGGTCCTCGGTGGCACC ATTTTCGTCTCAGGATACGACCAAAAACGACTCCGATTTGATCGTACCCTCACAACAATCCTCTCATCCCTCATG ATGGTCGTCTTCATCCTCCTCGCCCTCCCAACCATAATGGAGGTCTTCCCATCTGCCAAAGCCACCCCTGCAGAC CACATACTCTTAACGCAACGCATAGCGGCCATTATACTCGTCATCCTGCTCCTCACATTCCTCATTTTCCGCCTC GGCACCCATGCGGCCATGTTCGCTAGCACCCCATTCAGCCAGCGAGCTCAAGCCCACGGCGGCCGGTCTCAGATA ATCGAGGCCCAGATTCCACAGCCGTATTTTGGCAAGGCTTCAGCATCTATGATTCTAGCAGCTGCATCCGCGTCC GCGCTTGCGTGCACATATTACATAGTAGGTTGTTTGGGTGGGGTTGCTTCAATCACGGGTATGAATCAGTCTTTC CTTGCCGTGACAGTTGTTCCACTGGTCGGAAACTCGGTTAAGTACCGCCGCATTGTGATGGGGTCCCGGACTTAC AATCAGATCGAGCTTGGAATCAGGGCGGTTGTTAACAATGTGTTGCGGGTTACGATGCTTATTGCTCCGCTACTG GTTCTCGTTGGTTGGGGTTTTGACCAGCCGCTTATTCTGAGATTTGATGGGTTTGAGGCTACAATGCTTTTGCTT AGTGTTGTGGTGATGACCTATCTTATTTCTGATGGGCGGAGCAATTACTTCGAGGGGTTGATGTTGATTGGAACA TACATGATTATCACGTTCTCGTTCTTTGTTAGGCCTGAGGTGCCGGCGAATGTGATTTACCTAGGTGGTTAG |
| Gene | >Pro_DTO377G3_2|g462.t1 ATGTCTCCCAATCGAGCTTCACCTATGCTATACTTCAATTTTATCATGGCACAGGTCCAGCACCACCTGCGCCTC TTGTCACTTTTGATACCTCTCATCGGTATCATAGCAGGAGCCCTCAATTGGAACAGTGTTGCTATCTTCACCCTC AACATCGTCGCTGTGATTCCGCTTGGATTATGGGTTAACCGATCAGTCGATTCGTTGACTGTAGGTGGCAGCCGA GTTGTCAATGAACTGCTGAAATCAACACTGGGAAATTCGGTGGAATTGATGGTGATATCTAGCCCTGGGGGATTC AAGCTTCAATTCAAACATATGCTAACGACGATTGATCCAGATCGGAATTAATGCGATCGCGCAAAAAAAATCACA CATCTCCCAATCTGTGATACTTGGAAGTGTCCTGAGCAATTTACTGCTGGTAATAAATCCCAGTATCAAACCCAA CAACTGGTGCCATGAACCTCCCCCTAATACAATCTATATCTACAGGTCCTCGGTGGCACCATTTTCGTCTCAGGA TACGACCAAAAACGACTCCGATTTGATCGTACCCTCACAACAATCCTCTCATCCCTCATGATGGTCGTCTTCATC CTCCTCGCCCTCCCAACCATAATGGAGGTCTTCCCATCTGCCAAAGCCACCCCTGCAGACCACATACTCTTAACG CAACGCATAGCGGCCATTATACTCGTCATCCTGCTCCTCACATTCCTCATTTTCCGCCTCGGCACCCATGCGGCC ATGTTCGCTAGCACCCCATTCAGCCAGCGAGCTCAAGCCCACGGCGGCCGGTCTCAGATAATCGAGGCCCAGATT CCACAGCCGTATTTTGGCAAGGCTTCAGCATCTATGATTCTAGCAGCTGCATCCGCGTCCGCGCTTGCGTGCACA TATTACATAGTAGGTTGTTTGGGTGGGGTTGCTTCAATCACGGGTATGAATCAGTCTTTCCTTGCCGTGACAGTT GTTCCACTGGTCGGAAACTCGGTTAAGTACCGCCGCATTGTGATGGGGTCCCGGACTTACAATCAGATCGAGCTT GGAATCAGGGCGGTTGTTAACAATGTGTTGCGGGTTACGATGCTTATTGCTCCGCTACTGGTTCTCGTTGGTTGG GGTTTTGACCAGCCGCTTATTCTGAGATTTGATGGGTTTGAGGCTACAATGCTTTTGCTTAGTGTTGTGGTGATG ACCTATCTTATTTCTGATGGGCGGAGCAATTACTTCGAGGGGTTGATGTTGATTGGAACGTGAGTCGCTCGCACT ACTTTGATGGACTTTGATTCGTCGGTATTAACTTTACTTTCTCTTGATAGATACATGATTATCACGTTCTCGTTC TTTGTTAGGCCTGAGGTGCCGGCGAATGTGATTTACCTAGGTGGTTAG |